Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:06:43 (380464): wrapper (7.7.26015): starting
05:06:43 (380464): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 05:06:43] Arguments: --nthreads 12
[2025-07-26 05:06:43] Threads: 12
[2025-07-26 05:06:43] Checking for CVMFS
[2025-07-26 05:06:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 05:06:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 05:06:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 05:06:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 05:06:43] 2.12.6.0 1267368 16719 337152 148770 3 105 28501021 32935937 10806 16776704 0 31559632 99.688 62529400 30439 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 05:06:43] CVMFS is ok
[2025-07-26 05:06:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 05:06:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 05:06:43] Further information can be found at the LHC@home message board.
[2025-07-26 05:06:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 05:06:43] Checking for apptainer binary...
[2025-07-26 05:06:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 05:06:43] Running /usr/bin/apptainer --version
[2025-07-26 05:06:43] apptainer version 1.4.1-1.el9
[2025-07-26 05:06:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 05:06:44] c6-2-29-3.aglt2.org
[2025-07-26 05:06:44] apptainer works
[2025-07-26 05:06:44] Set ATHENA_PROC_NUMBER=12
[2025-07-26 05:06:44] Set ATHENA_CORE_NUMBER=12
[2025-07-26 05:06:44] Starting ATLAS job with PandaID=6745068661
[2025-07-26 05:06:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 06:42:10]  *** The last 200 lines of the pilot log: ***
[2025-07-26 06:42:10]  workdir=None
[2025-07-26 06:42:10] ]
[2025-07-26 06:42:10] 2025-07-26 10:41:30,402 | INFO     | transferring file log.45743349._029872.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745068661/log.45743349._029872.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 06:42:10] 2025-07-26 10:41:30,402 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745068661/log.45743349._029872.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._029872.job
[2025-07-26 06:42:10] 2025-07-26 10:41:30,422 | INFO     | adding to output.list: log.45743349._029872.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/08/e8/log.45743349._029872.job.log.tg
[2025-07-26 06:42:10] 2025-07-26 10:41:30,424 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 06:42:10] 2025-07-26 10:41:30,424 | INFO     | summary of transferred files:
[2025-07-26 06:42:10] 2025-07-26 10:41:30,424 | INFO     |  -- lfn=log.45743349._029872.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 06:42:10] 2025-07-26 10:41:30,424 | INFO     | stage-out finished correctly
[2025-07-26 06:42:10] 2025-07-26 10:41:30,980 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 06:42:10] 2025-07-26 10:41:31,288 | INFO     | job 6745068661 has state=finished
[2025-07-26 06:42:10] 2025-07-26 10:41:31,288 | INFO     | preparing for final server update for job 6745068661 in state='finished'
[2025-07-26 06:42:10] 2025-07-26 10:41:31,289 | INFO     | this job has now completed (state=finished)
[2025-07-26 06:42:10] 2025-07-26 10:41:31,290 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 06:42:10] 2025-07-26 10:41:31,290 | INFO     | log transfer has been attempted: DONE
[2025-07-26 06:42:10] 2025-07-26 10:41:31,290 | INFO     | job 6745068661 has finished - writing final server update
[2025-07-26 06:42:10] 2025-07-26 10:41:31,290 | INFO     | total number of processed events: 400 (read)
[2025-07-26 06:42:10] 2025-07-26 10:41:31,291 | INFO     | executing command: lscpu
[2025-07-26 06:42:10] 2025-07-26 10:41:31,346 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 06:42:10] 2025-07-26 10:41:34,280 | WARNING  | process 391147 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 06:42:10] 2025-07-26 10:41:34,281 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745068661/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 06:42:10] 2025-07-26 10:41:34,282 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745068661/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 06:42:10] 2025-07-26 10:41:34,283 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4076277 B
[2025-07-26 06:42:10] 2025-07-26 10:41:34,284 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15305 B
[2025-07-26 06:42:10] 2025-07-26 10:41:34,284 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 06:42:10] 2025-07-26 10:41:37,032 | INFO     | PID=384035 has CPU usage=14.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 06:42:10] 2025-07-26 10:41:37,033 | INFO     | .. there are 14 such processes running
[2025-07-26 06:42:10] 2025-07-26 10:41:37,594 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 06:42:10] 2025-07-26 10:41:37,607 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2554.9420892857147
[2025-07-26 06:42:10] 2025-07-26 10:41:37,618 | INFO     | sufficient remaining disk space (76357304320 B)
[2025-07-26 06:42:10] 2025-07-26 10:41:37,619 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-26 06:42:10] 2025-07-26 10:41:37,620 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6745068661: 4381087 B (within 2537553920 B limit)
[2025-07-26 06:42:10] 2025-07-26 10:41:37,620 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6745068661/HITS.45743349._029872.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-26 06:42:10] 2025-07-26 10:41:37,620 | INFO     | total size of present files: 0 B (workdir size: 4381087 B)
[2025-07-26 06:42:10] 2025-07-26 10:41:37,622 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6745068661/HITS.45743349._029872.pool.root.1 since it does not exist
[2025-07-26 06:42:10] 2025-07-26 10:41:37,626 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745068661/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 06:42:10] 2025-07-26 10:41:37,627 | INFO     | extracted standard info from prmon json
[2025-07-26 06:42:10] 2025-07-26 10:41:37,627 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 06:42:10] 2025-07-26 10:41:37,628 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 06:42:10] 2025-07-26 10:41:37,628 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 06:42:10] 2025-07-26 10:41:37,629 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 06:42:10] 2025-07-26 10:41:37,632 | INFO     | fitting pss+swap vs Time
[2025-07-26 06:42:10] 2025-07-26 10:41:37,633 | INFO     | sum of square deviations: 197186501.08139488
[2025-07-26 06:42:10] 2025-07-26 10:41:37,633 | INFO     | sum of deviations: 3481215909.360465
[2025-07-26 06:42:10] 2025-07-26 10:41:37,634 | INFO     | mean x: 1753523746.5697675
[2025-07-26 06:42:10] 2025-07-26 10:41:37,634 | INFO     | mean y: 2358638.523255814
[2025-07-26 06:42:10] 2025-07-26 10:41:37,634 | INFO     | -- intersect: -30955109192.807976
[2025-07-26 06:42:10] 2025-07-26 10:41:37,635 | INFO     | intersect: -30955109192.807976
[2025-07-26 06:42:10] 2025-07-26 10:41:37,638 | INFO     | chi2: 0.05808279152299201
[2025-07-26 06:42:10] 2025-07-26 10:41:37,639 | INFO     | -- intersect: -30955109192.807976
[2025-07-26 06:42:10] 2025-07-26 10:41:37,639 | INFO     | current memory leak: 17.65 B/s (using 86 data points, chi2=0.06)
[2025-07-26 06:42:10] 2025-07-26 10:41:37,643 | INFO     | could have reported an average CPU frequency of 2664 MHz (7 samples)
[2025-07-26 06:42:10] 2025-07-26 10:41:37,646 | INFO     | ..............................
[2025-07-26 06:42:10] 2025-07-26 10:41:37,647 | INFO     | . Timing measurements:
[2025-07-26 06:42:10] 2025-07-26 10:41:37,648 | INFO     | . get job = 0 s
[2025-07-26 06:42:10] 2025-07-26 10:41:37,648 | INFO     | . initial setup = 2 s
[2025-07-26 06:42:10] 2025-07-26 10:41:37,648 | INFO     | . payload setup = 8 s
[2025-07-26 06:42:10] 2025-07-26 10:41:37,649 | INFO     | . stage-in = 0 s
[2025-07-26 06:42:10] 2025-07-26 10:41:37,649 | INFO     | . payload execution = 5642 s
[2025-07-26 06:42:10] 2025-07-26 10:41:37,653 | INFO     | . stage-out = 1 s
[2025-07-26 06:42:10] 2025-07-26 10:41:37,653 | INFO     | . log creation = 0 s
[2025-07-26 06:42:10] 2025-07-26 10:41:37,653 | INFO     | ..............................
[2025-07-26 06:42:10] 2025-07-26 10:41:37,773 | INFO     | 
[2025-07-26 06:42:10] 2025-07-26 10:41:37,775 | INFO     | job summary report
[2025-07-26 06:42:10] 2025-07-26 10:41:37,775 | INFO     | --------------------------------------------------
[2025-07-26 06:42:10] 2025-07-26 10:41:37,775 | INFO     | PanDA job id: 6745068661
[2025-07-26 06:42:10] 2025-07-26 10:41:37,775 | INFO     | task id: 45743349
[2025-07-26 06:42:10] 2025-07-26 10:41:37,775 | INFO     | errors: (none)
[2025-07-26 06:42:10] 2025-07-26 10:41:37,775 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 06:42:10] 2025-07-26 10:41:37,775 | INFO     | pilot state: finished 
[2025-07-26 06:42:10] 2025-07-26 10:41:37,776 | INFO     | transexitcode: 0
[2025-07-26 06:42:10] 2025-07-26 10:41:37,776 | INFO     | exeerrorcode: 0
[2025-07-26 06:42:10] 2025-07-26 10:41:37,776 | INFO     | exeerrordiag: 
[2025-07-26 06:42:10] 2025-07-26 10:41:37,776 | INFO     | exitcode: 0
[2025-07-26 06:42:10] 2025-07-26 10:41:37,776 | INFO     | exitmsg: OK
[2025-07-26 06:42:10] 2025-07-26 10:41:37,776 | INFO     | cpuconsumptiontime: 50496 s
[2025-07-26 06:42:10] 2025-07-26 10:41:37,776 | INFO     | nevents: 400
[2025-07-26 06:42:10] 2025-07-26 10:41:37,776 | INFO     | neventsw: 0
[2025-07-26 06:42:10] 2025-07-26 10:41:37,776 | INFO     | pid: 391147
[2025-07-26 06:42:10] 2025-07-26 10:41:37,776 | INFO     | pgrp: 391147
[2025-07-26 06:42:10] 2025-07-26 10:41:37,776 | INFO     | corecount: 12
[2025-07-26 06:42:10] 2025-07-26 10:41:37,776 | INFO     | event service: False
[2025-07-26 06:42:10] 2025-07-26 10:41:37,776 | INFO     | sizes: {0: 2397304, 1: 2397503, 7: 2397765, 11: 2397793, 5655: 2424410, 5657: 2433592, 5664: 2433758}
[2025-07-26 06:42:10] 2025-07-26 10:41:37,777 | INFO     | --------------------------------------------------
[2025-07-26 06:42:10] 2025-07-26 10:41:37,777 | INFO     | 
[2025-07-26 06:42:10] 2025-07-26 10:41:37,777 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 06:42:10] 2025-07-26 10:41:37,809 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,812 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,812 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,812 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,812 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,812 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,812 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,812 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,812 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,813 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,813 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,813 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,813 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,814 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,814 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,814 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,814 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,817 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 06:42:10] 2025-07-26 10:41:37,817 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,817 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 06:42:10] 2025-07-26 10:41:37,817 | INFO     | job 6745068661 has completed (purged errors)
[2025-07-26 06:42:10] 2025-07-26 10:41:37,818 | INFO     | overall cleanup function is called
[2025-07-26 06:42:10] 2025-07-26 10:41:38,136 | INFO     | number of running child processes to parent process 391147: 1
[2025-07-26 06:42:10] 2025-07-26 10:41:38,137 | INFO     | maximum number of monitored processes: 6
[2025-07-26 06:42:10] 2025-07-26 10:41:38,137 | INFO     | aborting job monitoring since job object (job id=6745068661) has expired
[2025-07-26 06:42:10] 2025-07-26 10:41:38,826 | INFO     | --- collectZombieJob: --- 10, [391147]
[2025-07-26 06:42:10] 2025-07-26 10:41:38,826 | INFO     | zombie collector waiting for pid 391147
[2025-07-26 06:42:10] 2025-07-26 10:41:38,827 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 06:42:10] 2025-07-26 10:41:38,827 | INFO     | collected zombie processes
[2025-07-26 06:42:10] 2025-07-26 10:41:38,827 | INFO     | will attempt to kill all subprocesses of pid=391147
[2025-07-26 06:42:10] 2025-07-26 10:41:39,139 | INFO     | process IDs to be killed: [391147] (in reverse order)
[2025-07-26 06:42:10] 2025-07-26 10:41:39,258 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 06:42:10] 2025-07-26 10:41:39,259 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 06:42:10] 2025-07-26 10:41:39,274 | INFO     | did not find any defunct processes belonging to 391147
[2025-07-26 06:42:10] 2025-07-26 10:41:39,289 | INFO     | did not find any defunct processes belonging to 391147
[2025-07-26 06:42:10] 2025-07-26 10:41:39,290 | INFO     | ready for new job
[2025-07-26 06:42:10] 2025-07-26 10:41:39,290 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 06:42:10] 2025-07-26 10:41:39,294 | INFO     | ***************************************
[2025-07-26 06:42:10] 2025-07-26 10:41:39,294 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 06:42:10] 2025-07-26 10:41:39,294 | INFO     | ***************************************
[2025-07-26 06:42:10] 2025-07-26 10:41:39,294 | INFO     | 
[2025-07-26 06:42:10] 2025-07-26 10:41:39,310 | INFO     | architecture information:
[2025-07-26 06:42:10] 2025-07-26 10:41:39,311 | INFO     | executing command: cat /etc/os-release
[2025-07-26 06:42:10] 2025-07-26 10:41:39,336 | INFO     | cat /etc/os-release:
[2025-07-26 06:42:10] NAME="CentOS Linux"
[2025-07-26 06:42:10] VERSION="7 (Core)"
[2025-07-26 06:42:10] ID="centos"
[2025-07-26 06:42:10] ID_LIKE="rhel fedora"
[2025-07-26 06:42:10] VERSION_ID="7"
[2025-07-26 06:42:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 06:42:10] ANSI_COLOR="0;31"
[2025-07-26 06:42:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 06:42:10] HOME_URL="https://www.centos.org/"
[2025-07-26 06:42:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 06:42:10] 
[2025-07-26 06:42:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 06:42:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 06:42:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 06:42:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 06:42:10] 
[2025-07-26 06:42:10] 2025-07-26 10:41:39,337 | INFO     | ***************************************
[2025-07-26 06:42:10] 2025-07-26 10:41:39,839 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 06:42:10] 2025-07-26 10:41:39,866 | INFO     | sufficient remaining disk space (76362547200 B)
[2025-07-26 06:42:10] 2025-07-26 10:41:39,867 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 06:42:10] 2025-07-26 10:41:39,867 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 06:42:10] 2025-07-26 10:41:39,867 | INFO     | update_server=False
[2025-07-26 06:42:10] 2025-07-26 10:41:39,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 06:42:10] 2025-07-26 10:41:39,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 06:42:10] 2025-07-26 10:41:39,868 | INFO     | aborting loop
[2025-07-26 06:42:10] 2025-07-26 10:41:40,502 | INFO     | all data control threads have been joined
[2025-07-26 06:42:10] 2025-07-26 10:41:40,873 | INFO     | [job] retrieve thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:40,875 | INFO     | [job] job monitor thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:40,930 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:41,019 | INFO     | all job control threads have been joined
[2025-07-26 06:42:10] 2025-07-26 10:41:41,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 06:42:10] 2025-07-26 10:41:41,167 | INFO     | [payload] validate_post thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:41,216 | INFO     | all payload control threads have been joined
[2025-07-26 06:42:10] 2025-07-26 10:41:41,508 | INFO     | [data] control thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:41,600 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 06:42:10] 2025-07-26 10:41:41,635 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:41,893 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:41,981 | INFO     | [data] copytool_in thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:41,999 | INFO     | [job] validate thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:42,024 | INFO     | [job] control thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:42,221 | INFO     | [payload] control thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:42,332 | INFO     | [payload] failed_post thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:42,786 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 06:42:10] 2025-07-26 10:41:43,098 | INFO     | [data] copytool_out thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:43,792 | INFO     | [job] queue monitor thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:45,609 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:50,529 | INFO     | job.realtimelogging is not enabled
[2025-07-26 06:42:10] 2025-07-26 10:41:51,535 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 06:42:10] 2025-07-26 10:41:52,723 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140482162071360)>', '<ExcThread(monitor, started 140481375749888)>']
[2025-07-26 06:42:10] 2025-07-26 10:41:57,748 | INFO     | all workflow threads have been joined
[2025-07-26 06:42:10] 2025-07-26 10:41:57,748 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 06:42:10] 2025-07-26 10:41:57,749 | INFO     | traces error code: 0
[2025-07-26 06:42:10] 2025-07-26 10:41:57,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 06:42:10] 2025-07-26 10:42:09,601 | INFO     | PID=384035 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 06:42:10] 2025-07-26 10:42:09,602 | INFO     | .. there are 14 such processes running
[2025-07-26 06:42:10] 2025-07-26 10:42:09,603 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 06:42:10] 2025-07-26 10:42:09,603 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 06:42:10] 2025-07-26 10:42:09,603 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 06:42:10] 2025-07-26 10:42:09,604 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 06:42:10] 2025-07-26 10:42:09,604 | INFO     | [monitor] control thread has ended
[2025-07-26 06:42:10] 2025-07-26 10:42:09,874 [wrapper] ==== pilot stdout END ====
[2025-07-26 06:42:10] 2025-07-26 10:42:09,878 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 06:42:10] 2025-07-26 10:42:09,884 [wrapper] pilotpid: 384035
[2025-07-26 06:42:10] 2025-07-26 10:42:09,887 [wrapper] Pilot exit status: 0
[2025-07-26 06:42:10] 2025-07-26 10:42:09,906 [wrapper] pandaids: 6745068661
[2025-07-26 06:42:10] 2025-07-26 10:42:09,976 [wrapper] cleanup supervisor_pilot  636748 384036
[2025-07-26 06:42:10] 2025-07-26 10:42:09,982 [wrapper] Test setup, not cleaning
[2025-07-26 06:42:10] 2025-07-26 10:42:09,986 [wrapper] apfmon messages muted
[2025-07-26 06:42:10] 2025-07-26 10:42:09,992 [wrapper] ==== wrapper stdout END ====
[2025-07-26 06:42:10] 2025-07-26 10:42:09,999 [wrapper] ==== wrapper stderr END ====
[2025-07-26 06:42:10]  *** Error codes and diagnostics ***
[2025-07-26 06:42:10]     "exeErrorCode": 0,
[2025-07-26 06:42:10]     "exeErrorDiag": "",
[2025-07-26 06:42:10]     "pilotErrorCode": 0,
[2025-07-26 06:42:10]     "pilotErrorDiag": "",
[2025-07-26 06:42:10]  *** Listing of results directory ***
[2025-07-26 06:42:10] total 442264
[2025-07-26 06:42:10] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 20:55 pilot3.tar.gz
[2025-07-26 06:42:10] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 21:01 queuedata.json
[2025-07-26 06:42:10] -rwx------. 1 boincer umatlas     36292 Jul 25 21:02 runpilot2-wrapper.sh
[2025-07-26 06:42:10] -rw-r--r--. 1 boincer umatlas       100 Jul 26 05:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 06:42:10] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 05:06 run_atlas
[2025-07-26 06:42:10] -rw-r--r--. 1 boincer umatlas       105 Jul 26 05:06 job.xml
[2025-07-26 06:42:10] -rw-r--r--. 2 boincer umatlas 231128197 Jul 26 05:06 EVNT.45743347._001671.pool.root.1
[2025-07-26 06:42:10] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 05:06 start_atlas.sh
[2025-07-26 06:42:10] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 05:06 shared
[2025-07-26 06:42:10] -rw-r--r--. 2 boincer umatlas    542902 Jul 26 05:06 input.tar.gz
[2025-07-26 06:42:10] -rw-r--r--. 1 boincer umatlas         0 Jul 26 05:06 boinc_lockfile
[2025-07-26 06:42:10] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 05:06 pandaJob.out
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas    980133 Jul 26 05:06 agis_schedconf.cvmfs.json
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas   1593052 Jul 26 05:06 agis_ddmendpoints.agis.ALL.json
[2025-07-26 06:42:10] drwx------. 4 boincer umatlas      4096 Jul 26 05:06 pilot3
[2025-07-26 06:42:10] -rw-r--r--. 1 boincer umatlas      6842 Jul 26 06:40 init_data.xml
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas 216071557 Jul 26 06:40 HITS.45743349._029872.pool.root.1
[2025-07-26 06:42:10] -rw-r--r--. 1 boincer umatlas       529 Jul 26 06:41 boinc_task_state.xml
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas      1052 Jul 26 06:41 memory_monitor_summary.json
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas    370466 Jul 26 06:41 log.45743349._029872.job.log.tgz.1
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas      7823 Jul 26 06:41 heartbeat.json
[2025-07-26 06:42:10] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 06:41 boinc_mmap_file
[2025-07-26 06:42:10] -rw-r--r--. 1 boincer umatlas        27 Jul 26 06:41 wrapper_checkpoint.txt
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas        95 Jul 26 06:42 pilot_heartbeat.json
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas       822 Jul 26 06:42 pilotlog.txt
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas    533829 Jul 26 06:42 log.45743349._029872.job.log.1
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas       357 Jul 26 06:42 output.list
[2025-07-26 06:42:10] -rw-r--r--. 1 boincer umatlas       620 Jul 26 06:42 runtime_log
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas    921600 Jul 26 06:42 result.tar.gz
[2025-07-26 06:42:10] -rw-r--r--. 1 boincer umatlas      8667 Jul 26 06:42 runtime_log.err
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas       654 Jul 26 06:42 ad1KDm6Tiz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmdrzKDmt6dtsn.diag
[2025-07-26 06:42:10] -rw-r--r--. 1 boincer umatlas     22643 Jul 26 06:42 stderr.txt
[2025-07-26 06:42:10] HITS file was successfully produced:
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas 216071557 Jul 26 06:40 shared/HITS.pool.root.1
[2025-07-26 06:42:10]  *** Contents of shared directory: ***
[2025-07-26 06:42:10] total 438172
[2025-07-26 06:42:10] -rw-r--r--. 2 boincer umatlas 231128197 Jul 26 05:06 ATLAS.root_0
[2025-07-26 06:42:10] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 05:06 start_atlas.sh
[2025-07-26 06:42:10] -rw-r--r--. 2 boincer umatlas    542902 Jul 26 05:06 input.tar.gz
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas 216071557 Jul 26 06:40 HITS.pool.root.1
[2025-07-26 06:42:10] -rw-------. 1 boincer umatlas    921600 Jul 26 06:42 result.tar.gz
06:42:11 (380464): run_atlas exited; CPU time 50582.631301
06:42:11 (380464): called boinc_finish(0)

</stderr_txt>
]]>

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