Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:49:32 (24662): wrapper (7.7.26015): starting
02:49:32 (24662): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 02:49:32] Arguments: --nthreads 8
[2025-07-26 02:49:32] Threads: 8
[2025-07-26 02:49:32] Checking for CVMFS
[2025-07-26 02:49:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 02:49:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 02:49:32] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 02:49:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 02:49:32] 2.11.2.0 2944 110152 105368 148767 0 59 12238737 20275201 1 130560 0 28705818 99.951 11091198 11078 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 02:49:32] CVMFS is ok
[2025-07-26 02:49:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 02:49:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 02:49:32] Further information can be found at the LHC@home message board.
[2025-07-26 02:49:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 02:49:32] Checking for apptainer binary...
[2025-07-26 02:49:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 02:49:32] Running /usr/bin/apptainer --version
[2025-07-26 02:49:32] apptainer version 1.3.2-1.el7
[2025-07-26 02:49:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 02:49:34] c-204-38.aglt2.org
[2025-07-26 02:49:34] apptainer works
[2025-07-26 02:49:34] Set ATHENA_PROC_NUMBER=8
[2025-07-26 02:49:34] Set ATHENA_CORE_NUMBER=8
[2025-07-26 02:49:34] Starting ATLAS job with PandaID=6745068577
[2025-07-26 02:49:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 05:17:10]  *** The last 200 lines of the pilot log: ***
[2025-07-26 05:17:10] 2025-07-26 09:16:38,713 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 05:17:10] 2025-07-26 09:16:38,713 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 05:17:10] 2025-07-26 09:16:38,713 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 05:17:10] 2025-07-26 09:16:38,717 | INFO     | fitting pss+swap vs Time
[2025-07-26 05:17:10] 2025-07-26 09:16:38,717 | INFO     | sum of square deviations: 925859220.0
[2025-07-26 05:17:10] 2025-07-26 09:16:38,718 | INFO     | sum of deviations: 11137633058.499994
[2025-07-26 05:17:10] 2025-07-26 09:16:38,718 | INFO     | mean x: 1753516984.5
[2025-07-26 05:17:10] 2025-07-26 09:16:38,718 | INFO     | mean y: 2497921.284722222
[2025-07-26 05:17:10] 2025-07-26 09:16:38,718 | INFO     | -- intersect: -21091452771.57377
[2025-07-26 05:17:10] 2025-07-26 09:16:38,719 | INFO     | intersect: -21091452771.57377
[2025-07-26 05:17:10] 2025-07-26 09:16:38,719 | INFO     | chi2: 1.5016518507413328
[2025-07-26 05:17:10] 2025-07-26 09:16:38,719 | INFO     | sum of square deviations: 832722590.0
[2025-07-26 05:17:10] 2025-07-26 09:16:38,720 | INFO     | sum of deviations: 10808145371.0
[2025-07-26 05:17:10] 2025-07-26 09:16:38,720 | INFO     | mean x: 1753516832.0
[2025-07-26 05:17:10] 2025-07-26 09:16:38,720 | INFO     | mean y: 2497380.654676259
[2025-07-26 05:17:10] 2025-07-26 09:16:38,720 | INFO     | -- intersect: -22756900596.949593
[2025-07-26 05:17:10] 2025-07-26 09:16:38,721 | INFO     | intersect: -22756900596.949593
[2025-07-26 05:17:10] 2025-07-26 09:16:38,721 | INFO     | chi2: 1.5034880554453238
[2025-07-26 05:17:10] 2025-07-26 09:16:38,721 | INFO     | current chi2=1.5034880554453238 (change=-0.12227898917345893 %)
[2025-07-26 05:17:10] 2025-07-26 09:16:38,721 | INFO     | right removable region: 138
[2025-07-26 05:17:10] 2025-07-26 09:16:38,721 | INFO     | sum of square deviations: 832722590.0
[2025-07-26 05:17:10] 2025-07-26 09:16:38,722 | INFO     | sum of deviations: -9522590927.999992
[2025-07-26 05:17:10] 2025-07-26 09:16:38,722 | INFO     | mean x: 1753517137.0
[2025-07-26 05:17:10] 2025-07-26 09:16:38,722 | INFO     | mean y: 2531185.273381295
[2025-07-26 05:17:10] 2025-07-26 09:16:38,723 | INFO     | -- intersect: 20054859033.000824
[2025-07-26 05:17:10] 2025-07-26 09:16:38,723 | INFO     | intersect: 20054859033.000824
[2025-07-26 05:17:10] 2025-07-26 09:16:38,723 | INFO     | chi2: 0.11362683920194959
[2025-07-26 05:17:10] 2025-07-26 09:16:38,723 | INFO     | current chi2=0.11362683920194959 (change=92.43321019143988 %)
[2025-07-26 05:17:10] 2025-07-26 09:16:38,724 | INFO     | sum of square deviations: 746051197.5
[2025-07-26 05:17:10] 2025-07-26 09:16:38,724 | INFO     | sum of deviations: -10696280795.499998
[2025-07-26 05:17:10] 2025-07-26 09:16:38,725 | INFO     | mean x: 1753517289.5
[2025-07-26 05:17:10] 2025-07-26 09:16:38,725 | INFO     | mean y: 2533190.231343284
[2025-07-26 05:17:10] 2025-07-26 09:16:38,725 | INFO     | -- intersect: 25143050853.238056
[2025-07-26 05:17:10] 2025-07-26 09:16:38,725 | INFO     | sufficient remaining disk space (18532532224 B)
[2025-07-26 05:17:10] 2025-07-26 09:16:38,726 | INFO     | intersect: 25143050853.238056
[2025-07-26 05:17:10] 2025-07-26 09:16:38,726 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-26 05:17:10] 2025-07-26 09:16:38,726 | INFO     | chi2: 0.09445166225970074
[2025-07-26 05:17:10] 2025-07-26 09:16:38,726 | INFO     | current chi2=0.09445166225970074 (change=16.875570135475392 %)
[2025-07-26 05:17:10] 2025-07-26 09:16:38,726 | INFO     | left removable region: 20
[2025-07-26 05:17:10] 2025-07-26 09:16:38,727 | INFO     | sum of square deviations: 509440249.5
[2025-07-26 05:17:10] 2025-07-26 09:16:38,727 | INFO     | sum of deviations: -1542198309.5
[2025-07-26 05:17:10] 2025-07-26 09:16:38,728 | INFO     | mean x: 1753517411.5
[2025-07-26 05:17:10] 2025-07-26 09:16:38,728 | INFO     | mean y: 2515255.8220338984
[2025-07-26 05:17:10] 2025-07-26 09:16:38,728 | INFO     | -- intersect: 5310834711.044262
[2025-07-26 05:17:10] 2025-07-26 09:16:38,728 | INFO     | intersect: 5310834711.044262
[2025-07-26 05:17:10] 2025-07-26 09:16:38,728 | INFO     | chi2: 0.0361796731819047
[2025-07-26 05:17:10] 2025-07-26 09:16:38,728 | INFO     | -- intersect: 5310834711.044262
[2025-07-26 05:17:10] 2025-07-26 09:16:38,729 | INFO     | current memory leak: -3.03 B/s (using 118 data points, chi2=0.04)
[2025-07-26 05:17:10] 2025-07-26 09:16:38,729 | INFO     | could have reported an average CPU frequency of 1985 MHz (8 samples)
[2025-07-26 05:17:10] 2025-07-26 09:16:38,729 | INFO     | ..............................
[2025-07-26 05:17:10] 2025-07-26 09:16:38,730 | INFO     | . Timing measurements:
[2025-07-26 05:17:10] 2025-07-26 09:16:38,730 | INFO     | . get job = 0 s
[2025-07-26 05:17:10] 2025-07-26 09:16:38,730 | INFO     | . initial setup = 2 s
[2025-07-26 05:17:10] 2025-07-26 09:16:38,730 | INFO     | . payload setup = 11 s
[2025-07-26 05:17:10] 2025-07-26 09:16:38,730 | INFO     | . stage-in = 0 s
[2025-07-26 05:17:10] 2025-07-26 09:16:38,730 | INFO     | . payload execution = 8766 s
[2025-07-26 05:17:10] 2025-07-26 09:16:38,730 | INFO     | . stage-out = 0 s
[2025-07-26 05:17:10] 2025-07-26 09:16:38,731 | INFO     | . log creation = 0 s
[2025-07-26 05:17:10] 2025-07-26 09:16:38,731 | INFO     | ..............................
[2025-07-26 05:17:10] 2025-07-26 09:16:38,825 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6745068577: 3745664 B (within 2537553920 B limit)
[2025-07-26 05:17:10] 2025-07-26 09:16:38,825 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6745068577/HITS.45743349._029788.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-26 05:17:10] 2025-07-26 09:16:38,825 | INFO     | total size of present files: 0 B (workdir size: 3745664 B)
[2025-07-26 05:17:10] 2025-07-26 09:16:38,825 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6745068577/HITS.45743349._029788.pool.root.1 since it does not exist
[2025-07-26 05:17:10] 2025-07-26 09:16:38,870 | INFO     | 
[2025-07-26 05:17:10] 2025-07-26 09:16:38,871 | INFO     | job summary report
[2025-07-26 05:17:10] 2025-07-26 09:16:38,871 | INFO     | --------------------------------------------------
[2025-07-26 05:17:10] 2025-07-26 09:16:38,871 | INFO     | PanDA job id: 6745068577
[2025-07-26 05:17:10] 2025-07-26 09:16:38,871 | INFO     | task id: 45743349
[2025-07-26 05:17:10] 2025-07-26 09:16:38,871 | INFO     | errors: (none)
[2025-07-26 05:17:10] 2025-07-26 09:16:38,872 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 05:17:10] 2025-07-26 09:16:38,872 | INFO     | pilot state: finished 
[2025-07-26 05:17:10] 2025-07-26 09:16:38,872 | INFO     | transexitcode: 0
[2025-07-26 05:17:10] 2025-07-26 09:16:38,872 | INFO     | exeerrorcode: 0
[2025-07-26 05:17:10] 2025-07-26 09:16:38,873 | INFO     | exeerrordiag: 
[2025-07-26 05:17:10] 2025-07-26 09:16:38,873 | INFO     | exitcode: 0
[2025-07-26 05:17:10] 2025-07-26 09:16:38,873 | INFO     | exitmsg: OK
[2025-07-26 05:17:10] 2025-07-26 09:16:38,874 | INFO     | cpuconsumptiontime: 64666 s
[2025-07-26 05:17:10] 2025-07-26 09:16:38,874 | INFO     | nevents: 400
[2025-07-26 05:17:10] 2025-07-26 09:16:38,874 | INFO     | neventsw: 0
[2025-07-26 05:17:10] 2025-07-26 09:16:38,875 | INFO     | pid: 4319
[2025-07-26 05:17:10] 2025-07-26 09:16:38,875 | INFO     | pgrp: 4319
[2025-07-26 05:17:10] 2025-07-26 09:16:38,875 | INFO     | corecount: 8
[2025-07-26 05:17:10] 2025-07-26 09:16:38,875 | INFO     | event service: False
[2025-07-26 05:17:10] 2025-07-26 09:16:38,875 | INFO     | sizes: {0: 2397475, 1: 2397475, 6: 2397765, 11: 2397793, 8781: 2425759, 8782: 2434757, 8785: 2434941, 8792: 2435135}
[2025-07-26 05:17:10] 2025-07-26 09:16:38,876 | INFO     | --------------------------------------------------
[2025-07-26 05:17:10] 2025-07-26 09:16:38,876 | INFO     | 
[2025-07-26 05:17:10] 2025-07-26 09:16:38,876 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 05:17:10] 2025-07-26 09:16:38,901 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,902 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,903 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,903 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,903 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,903 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,903 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,904 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,904 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,904 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,904 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,905 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,905 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,905 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,905 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,906 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,906 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,906 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 05:17:10] 2025-07-26 09:16:38,906 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,906 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 05:17:10] 2025-07-26 09:16:38,907 | INFO     | job 6745068577 has completed (purged errors)
[2025-07-26 05:17:10] 2025-07-26 09:16:38,907 | INFO     | overall cleanup function is called
[2025-07-26 05:17:10] 2025-07-26 09:16:38,935 | INFO     | number of running child processes to parent process 4319: 1
[2025-07-26 05:17:10] 2025-07-26 09:16:38,936 | INFO     | maximum number of monitored processes: 6
[2025-07-26 05:17:10] 2025-07-26 09:16:38,936 | INFO     | aborting job monitoring since job object (job id=6745068577) has expired
[2025-07-26 05:17:10] 2025-07-26 09:16:39,916 | INFO     | --- collectZombieJob: --- 10, [4319]
[2025-07-26 05:17:10] 2025-07-26 09:16:39,916 | INFO     | zombie collector waiting for pid 4319
[2025-07-26 05:17:10] 2025-07-26 09:16:39,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 05:17:10] 2025-07-26 09:16:39,917 | INFO     | collected zombie processes
[2025-07-26 05:17:10] 2025-07-26 09:16:39,917 | INFO     | will attempt to kill all subprocesses of pid=4319
[2025-07-26 05:17:10] 2025-07-26 09:16:40,006 | INFO     | process IDs to be killed: [4319] (in reverse order)
[2025-07-26 05:17:10] 2025-07-26 09:16:40,065 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 05:17:10] 2025-07-26 09:16:40,066 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 05:17:10] 2025-07-26 09:16:40,069 | INFO     | did not find any defunct processes belonging to 4319
[2025-07-26 05:17:10] 2025-07-26 09:16:40,073 | INFO     | did not find any defunct processes belonging to 4319
[2025-07-26 05:17:10] 2025-07-26 09:16:40,073 | INFO     | ready for new job
[2025-07-26 05:17:10] 2025-07-26 09:16:40,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 05:17:10] 2025-07-26 09:16:40,075 | INFO     | ***************************************
[2025-07-26 05:17:10] 2025-07-26 09:16:40,075 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 05:17:10] 2025-07-26 09:16:40,075 | INFO     | ***************************************
[2025-07-26 05:17:10] 2025-07-26 09:16:40,075 | INFO     | 
[2025-07-26 05:17:10] 2025-07-26 09:16:40,076 | INFO     | architecture information:
[2025-07-26 05:17:10] 2025-07-26 09:16:40,077 | INFO     | executing command: cat /etc/os-release
[2025-07-26 05:17:10] 2025-07-26 09:16:40,094 | INFO     | cat /etc/os-release:
[2025-07-26 05:17:10] NAME="CentOS Linux"
[2025-07-26 05:17:10] VERSION="7 (Core)"
[2025-07-26 05:17:10] ID="centos"
[2025-07-26 05:17:10] ID_LIKE="rhel fedora"
[2025-07-26 05:17:10] VERSION_ID="7"
[2025-07-26 05:17:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 05:17:10] ANSI_COLOR="0;31"
[2025-07-26 05:17:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 05:17:10] HOME_URL="https://www.centos.org/"
[2025-07-26 05:17:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 05:17:10] 
[2025-07-26 05:17:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 05:17:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 05:17:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 05:17:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 05:17:10] 
[2025-07-26 05:17:10] 2025-07-26 09:16:40,094 | INFO     | ***************************************
[2025-07-26 05:17:10] 2025-07-26 09:16:40,597 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 05:17:10] 2025-07-26 09:16:40,617 | INFO     | sufficient remaining disk space (18536726528 B)
[2025-07-26 05:17:10] 2025-07-26 09:16:40,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 05:17:10] 2025-07-26 09:16:40,617 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 05:17:10] 2025-07-26 09:16:40,618 | INFO     | update_server=False
[2025-07-26 05:17:10] 2025-07-26 09:16:40,618 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 05:17:10] 2025-07-26 09:16:40,618 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 05:17:10] 2025-07-26 09:16:40,619 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 05:17:10] 2025-07-26 09:16:40,619 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 05:17:10] 2025-07-26 09:16:40,619 | INFO     | aborting loop
[2025-07-26 05:17:10] 2025-07-26 09:16:41,381 | INFO     | all data control threads have been joined
[2025-07-26 05:17:10] 2025-07-26 09:16:41,623 | INFO     | [job] retrieve thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:41,624 | INFO     | [job] queue monitor thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:41,625 | INFO     | [job] job monitor thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:41,734 | INFO     | all payload control threads have been joined
[2025-07-26 05:17:10] 2025-07-26 09:16:41,792 | INFO     | [job] validate thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:41,806 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:41,826 | INFO     | [data] copytool_in thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:41,844 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:42,067 | INFO     | [payload] validate_post thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:42,081 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:42,197 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 05:17:10] 2025-07-26 09:16:42,295 | INFO     | all job control threads have been joined
[2025-07-26 05:17:10] 2025-07-26 09:16:42,384 | INFO     | [data] control thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:42,624 | INFO     | [data] copytool_out thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:42,735 | INFO     | [payload] control thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:43,076 | INFO     | [payload] failed_post thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:43,301 | INFO     | [job] control thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:46,203 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:51,416 | INFO     | job.realtimelogging is not enabled
[2025-07-26 05:17:10] 2025-07-26 09:16:52,418 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 05:17:10] 2025-07-26 09:16:53,940 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139801237186368)>', '<ExcThread(monitor, started 139799969130240)>']
[2025-07-26 05:17:10] 2025-07-26 09:16:58,965 | INFO     | all workflow threads have been joined
[2025-07-26 05:17:10] 2025-07-26 09:16:58,966 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 05:17:10] 2025-07-26 09:16:58,966 | INFO     | traces error code: 0
[2025-07-26 05:17:10] 2025-07-26 09:16:58,966 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 05:17:10] 2025-07-26 09:17:10,449 | INFO     | PID=28265 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 05:17:10] 2025-07-26 09:17:10,450 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 05:17:10] 2025-07-26 09:17:10,450 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 05:17:10] 2025-07-26 09:17:10,450 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 05:17:10] 2025-07-26 09:17:10,450 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 05:17:10] 2025-07-26 09:17:10,450 | INFO     | [monitor] control thread has ended
[2025-07-26 05:17:10] 2025-07-26 09:17:10,561 [wrapper] ==== pilot stdout END ====
[2025-07-26 05:17:10] 2025-07-26 09:17:10,565 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 05:17:10] 2025-07-26 09:17:10,570 [wrapper] pilotpid: 28265
[2025-07-26 05:17:10] 2025-07-26 09:17:10,575 [wrapper] Pilot exit status: 0
[2025-07-26 05:17:10] 2025-07-26 09:17:10,594 [wrapper] pandaids: 6745068577
[2025-07-26 05:17:10] 2025-07-26 09:17:10,641 [wrapper] cleanup supervisor_pilot 22707 28266
[2025-07-26 05:17:10] 2025-07-26 09:17:10,646 [wrapper] Test setup, not cleaning
[2025-07-26 05:17:10] 2025-07-26 09:17:10,650 [wrapper] apfmon messages muted
[2025-07-26 05:17:10] 2025-07-26 09:17:10,655 [wrapper] ==== wrapper stdout END ====
[2025-07-26 05:17:10] 2025-07-26 09:17:10,659 [wrapper] ==== wrapper stderr END ====
[2025-07-26 05:17:10]  *** Error codes and diagnostics ***
[2025-07-26 05:17:10]     "exeErrorCode": 0,
[2025-07-26 05:17:10]     "exeErrorDiag": "",
[2025-07-26 05:17:10]     "pilotErrorCode": 0,
[2025-07-26 05:17:10]     "pilotErrorDiag": "",
[2025-07-26 05:17:10]  *** Listing of results directory ***
[2025-07-26 05:17:10] total 434508
[2025-07-26 05:17:10] -rw-r--r-- 1 boincer umatlas    530466 Jul 25 20:19 pilot3.tar.gz
[2025-07-26 05:17:10] -rw-r--r-- 1 boincer umatlas      5112 Jul 25 20:50 queuedata.json
[2025-07-26 05:17:10] -rwx------ 1 boincer umatlas     36292 Jul 25 20:52 runpilot2-wrapper.sh
[2025-07-26 05:17:10] -rw-r--r-- 1 boincer umatlas       100 Jul 26 02:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 05:17:10] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 02:49 run_atlas
[2025-07-26 05:17:10] -rw-r--r-- 1 boincer umatlas       105 Jul 26 02:49 job.xml
[2025-07-26 05:17:10] -rw-r--r-- 2 boincer umatlas 229299448 Jul 26 02:49 EVNT.45743347._001666.pool.root.1
[2025-07-26 05:17:10] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 02:49 start_atlas.sh
[2025-07-26 05:17:10] drwxrwx--x 2 boincer umatlas      4096 Jul 26 02:49 shared
[2025-07-26 05:17:10] -rw-r--r-- 2 boincer umatlas    542902 Jul 26 02:49 input.tar.gz
[2025-07-26 05:17:10] -rw-r--r-- 1 boincer umatlas         0 Jul 26 02:49 boinc_lockfile
[2025-07-26 05:17:10] -rw-r--r-- 1 boincer umatlas      2563 Jul 26 02:49 pandaJob.out
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas    980001 Jul 26 02:49 agis_schedconf.cvmfs.json
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas   1593052 Jul 26 02:49 agis_ddmendpoints.agis.ALL.json
[2025-07-26 05:17:10] drwx------ 4 boincer umatlas      4096 Jul 26 02:49 pilot3
[2025-07-26 05:17:10] -rw-r--r-- 1 boincer umatlas      5904 Jul 26 05:09 init_data.xml
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas 209467293 Jul 26 05:15 HITS.45743349._029788.pool.root.1
[2025-07-26 05:17:10] -rw-r--r-- 1 boincer umatlas       529 Jul 26 05:16 boinc_task_state.xml
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas      1050 Jul 26 05:16 memory_monitor_summary.json
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas    348550 Jul 26 05:16 log.45743349._029788.job.log.tgz.1
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas      7844 Jul 26 05:16 heartbeat.json
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas        95 Jul 26 05:17 pilot_heartbeat.json
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas       745 Jul 26 05:17 pilotlog.txt
[2025-07-26 05:17:10] -rw-r--r-- 1 boincer umatlas        27 Jul 26 05:17 wrapper_checkpoint.txt
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas    796569 Jul 26 05:17 log.45743349._029788.job.log.1
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas       357 Jul 26 05:17 output.list
[2025-07-26 05:17:10] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 05:17 boinc_mmap_file
[2025-07-26 05:17:10] -rw-r--r-- 1 boincer umatlas       620 Jul 26 05:17 runtime_log
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas   1167360 Jul 26 05:17 result.tar.gz
[2025-07-26 05:17:10] -rw-r--r-- 1 boincer umatlas      8660 Jul 26 05:17 runtime_log.err
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas       660 Jul 26 05:17 JVNNDmhKiz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmdqzKDmIsA9lm.diag
[2025-07-26 05:17:10] -rw-r--r-- 1 boincer umatlas     21317 Jul 26 05:17 stderr.txt
[2025-07-26 05:17:10] HITS file was successfully produced:
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas 209467293 Jul 26 05:15 shared/HITS.pool.root.1
[2025-07-26 05:17:10]  *** Contents of shared directory: ***
[2025-07-26 05:17:10] total 430180
[2025-07-26 05:17:10] -rw-r--r-- 2 boincer umatlas 229299448 Jul 26 02:49 ATLAS.root_0
[2025-07-26 05:17:10] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 02:49 start_atlas.sh
[2025-07-26 05:17:10] -rw-r--r-- 2 boincer umatlas    542902 Jul 26 02:49 input.tar.gz
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas 209467293 Jul 26 05:15 HITS.pool.root.1
[2025-07-26 05:17:10] -rw------- 1 boincer umatlas   1167360 Jul 26 05:17 result.tar.gz
05:17:12 (24662): run_atlas exited; CPU time 64627.081706
05:17:12 (24662): called boinc_finish(0)

</stderr_txt>
]]>

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