Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
16:43:49 (2884536): wrapper (7.7.26015): starting
16:43:49 (2884536): wrapper: running run_atlas (--nthreads 6)
[2025-07-27 16:43:49] Arguments: --nthreads 6
[2025-07-27 16:43:49] Threads: 6
[2025-07-27 16:43:49] Checking for CVMFS
[2025-07-27 16:43:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:43:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:43:49] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:43:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:43:49] 2.12.7.0 1004224 7339 62500 148815 1 57 3667505 6144000 0 130560 0 5247062 99.989 270326 3531 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.46:3128 1
[2025-07-27 16:43:49] CVMFS is ok
[2025-07-27 16:43:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:43:49] Checking for apptainer binary...
[2025-07-27 16:43:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:43:49] Running /usr/bin/apptainer --version
[2025-07-27 16:43:49] apptainer version 1.4.0
[2025-07-27 16:43:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:43:49] Beta
[2025-07-27 16:43:49] apptainer works
[2025-07-27 16:43:49] Set ATHENA_PROC_NUMBER=6
[2025-07-27 16:43:49] Set ATHENA_CORE_NUMBER=6
[2025-07-27 16:43:49] Starting ATLAS job with PandaID=6745065821
[2025-07-27 16:43:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:12:26]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:12:26]  is_altstaged=None
[2025-07-27 18:12:26]  is_tar=False
[2025-07-27 18:12:26]  lfn=log.45743349._028761.job.log.tgz.1
[2025-07-27 18:12:26]  mtime=0
[2025-07-27 18:12:26]  protocol_id=None
[2025-07-27 18:12:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 18:12:26]  replicas=None
[2025-07-27 18:12:26]  scope=mc23_13p6TeV
[2025-07-27 18:12:26]  status=None
[2025-07-27 18:12:26]  status_code=0
[2025-07-27 18:12:26]  storage_token=
[2025-07-27 18:12:26]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6745065821/log.45743349._028761.job.log.tgz.1
[2025-07-27 18:12:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/a1/log.45743349._028761.job.log.tgz.1
[2025-07-27 18:12:26]  workdir=None
[2025-07-27 18:12:26] ]
[2025-07-27 18:12:26] 2025-07-27 16:11:45,936 | INFO     | transferring file log.45743349._028761.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6745065821/log.45743349._028761.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-27 18:12:26] 2025-07-27 16:11:45,937 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6745065821/log.45743349._028761.job.log.tgz.1 /var/lib/boinc/slots/0/log.45743349._028761.job
[2025-07-27 18:12:26] 2025-07-27 16:11:45,945 | INFO     | adding to output.list: log.45743349._028761.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/a1/log.45743349._028761.job.log.tg
[2025-07-27 18:12:26] 2025-07-27 16:11:45,946 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:12:26] 2025-07-27 16:11:45,946 | INFO     | summary of transferred files:
[2025-07-27 18:12:26] 2025-07-27 16:11:45,946 | INFO     |  -- lfn=log.45743349._028761.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:12:26] 2025-07-27 16:11:45,946 | INFO     | stage-out finished correctly
[2025-07-27 18:12:26] 2025-07-27 16:11:47,138 | INFO     | monitor loop #404: job 0:6745065821 is in state 'finished'
[2025-07-27 18:12:26] 2025-07-27 16:11:47,139 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:12:26] 2025-07-27 16:11:48,933 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:12:26] 2025-07-27 16:11:49,643 | INFO     | monitor loop #405: job 0:6745065821 is in state 'finished'
[2025-07-27 18:12:26] 2025-07-27 16:11:49,644 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:12:26] 2025-07-27 16:11:50,620 | INFO     | job 6745065821 has state=finished
[2025-07-27 18:12:26] 2025-07-27 16:11:50,620 | INFO     | preparing for final server update for job 6745065821 in state='finished'
[2025-07-27 18:12:26] 2025-07-27 16:11:50,622 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:12:26] 2025-07-27 16:11:50,622 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:12:26] 2025-07-27 16:11:50,622 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:12:26] 2025-07-27 16:11:50,622 | INFO     | job 6745065821 has finished - writing final server update
[2025-07-27 18:12:26] 2025-07-27 16:11:50,623 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:12:26] 2025-07-27 16:11:50,626 | INFO     | executing command: lscpu
[2025-07-27 18:12:26] 2025-07-27 16:11:50,652 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:12:26] 2025-07-27 16:11:52,147 | INFO     | monitor loop #406: job 0:6745065821 is in state 'finished'
[2025-07-27 18:12:26] 2025-07-27 16:11:52,147 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:12:26] 2025-07-27 16:11:54,177 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 18:12:26] 2025-07-27 16:11:54,179 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 3699.844625
[2025-07-27 18:12:26] 2025-07-27 16:11:54,180 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6745065821/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:12:26] 2025-07-27 16:11:54,180 | INFO     | extracted standard info from prmon json
[2025-07-27 18:12:26] 2025-07-27 16:11:54,181 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:12:26] 2025-07-27 16:11:54,181 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:12:26] 2025-07-27 16:11:54,181 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:12:26] 2025-07-27 16:11:54,181 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:12:26] 2025-07-27 16:11:54,182 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:12:26] 2025-07-27 16:11:54,182 | INFO     | sum of square deviations: 158737860.0
[2025-07-27 18:12:26] 2025-07-27 16:11:54,182 | INFO     | sum of deviations: -12418703086.5
[2025-07-27 18:12:26] 2025-07-27 16:11:54,182 | INFO     | mean x: 1753630167.5
[2025-07-27 18:12:26] 2025-07-27 16:11:54,182 | INFO     | mean y: 2620308.9375
[2025-07-27 18:12:26] 2025-07-27 16:11:54,182 | INFO     | -- intersect: 137196181906.10002
[2025-07-27 18:12:26] 2025-07-27 16:11:54,182 | INFO     | intersect: 137196181906.10002
[2025-07-27 18:12:26] 2025-07-27 16:11:54,182 | INFO     | chi2: 0.13397676360044716
[2025-07-27 18:12:26] 2025-07-27 16:11:54,182 | INFO     | -- intersect: 137196181906.10002
[2025-07-27 18:12:26] 2025-07-27 16:11:54,182 | INFO     | current memory leak: -78.23 B/s (using 80 data points, chi2=0.13)
[2025-07-27 18:12:26] 2025-07-27 16:11:54,182 | INFO     | could have reported an average CPU frequency of 3700 MHz (6 samples)
[2025-07-27 18:12:26] 2025-07-27 16:11:54,183 | INFO     | ..............................
[2025-07-27 18:12:26] 2025-07-27 16:11:54,183 | INFO     | . Timing measurements:
[2025-07-27 18:12:26] 2025-07-27 16:11:54,183 | INFO     | . get job = 0 s
[2025-07-27 18:12:26] 2025-07-27 16:11:54,183 | INFO     | . initial setup = 1 s
[2025-07-27 18:12:26] 2025-07-27 16:11:54,183 | INFO     | . payload setup = 3 s
[2025-07-27 18:12:26] 2025-07-27 16:11:54,183 | INFO     | . stage-in = 0 s
[2025-07-27 18:12:26] 2025-07-27 16:11:54,183 | INFO     | . payload execution = 5251 s
[2025-07-27 18:12:26] 2025-07-27 16:11:54,183 | INFO     | . stage-out = 0 s
[2025-07-27 18:12:26] 2025-07-27 16:11:54,183 | INFO     | . log creation = 0 s
[2025-07-27 18:12:26] 2025-07-27 16:11:54,183 | INFO     | ..............................
[2025-07-27 18:12:26] 2025-07-27 16:11:54,563 | INFO     | 
[2025-07-27 18:12:26] 2025-07-27 16:11:54,563 | INFO     | job summary report
[2025-07-27 18:12:26] 2025-07-27 16:11:54,564 | INFO     | --------------------------------------------------
[2025-07-27 18:12:26] 2025-07-27 16:11:54,564 | INFO     | PanDA job id: 6745065821
[2025-07-27 18:12:26] 2025-07-27 16:11:54,564 | INFO     | task id: 45743349
[2025-07-27 18:12:26] 2025-07-27 16:11:54,565 | INFO     | errors: (none)
[2025-07-27 18:12:26] 2025-07-27 16:11:54,565 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:12:26] 2025-07-27 16:11:54,565 | INFO     | pilot state: finished 
[2025-07-27 18:12:26] 2025-07-27 16:11:54,565 | INFO     | transexitcode: 0
[2025-07-27 18:12:26] 2025-07-27 16:11:54,566 | INFO     | exeerrorcode: 0
[2025-07-27 18:12:26] 2025-07-27 16:11:54,566 | INFO     | exeerrordiag: 
[2025-07-27 18:12:26] 2025-07-27 16:11:54,566 | INFO     | exitcode: 0
[2025-07-27 18:12:26] 2025-07-27 16:11:54,567 | INFO     | exitmsg: OK
[2025-07-27 18:12:26] 2025-07-27 16:11:54,567 | INFO     | cpuconsumptiontime: 30233 s
[2025-07-27 18:12:26] 2025-07-27 16:11:54,567 | INFO     | nevents: 400
[2025-07-27 18:12:26] 2025-07-27 16:11:54,567 | INFO     | neventsw: 0
[2025-07-27 18:12:26] 2025-07-27 16:11:54,568 | INFO     | pid: 2894628
[2025-07-27 18:12:26] 2025-07-27 16:11:54,568 | INFO     | pgrp: 2894628
[2025-07-27 18:12:26] 2025-07-27 16:11:54,568 | INFO     | corecount: 6
[2025-07-27 18:12:26] 2025-07-27 16:11:54,568 | INFO     | event service: False
[2025-07-27 18:12:26] 2025-07-27 16:11:54,568 | INFO     | sizes: {0: 2397475, 3: 2397737, 11: 2397765, 5258: 2424325, 5259: 2433323, 5262: 2433379, 5267: 2433701}
[2025-07-27 18:12:26] 2025-07-27 16:11:54,568 | INFO     | --------------------------------------------------
[2025-07-27 18:12:26] 2025-07-27 16:11:54,568 | INFO     | 
[2025-07-27 18:12:26] 2025-07-27 16:11:54,568 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-27 18:12:26] 2025-07-27 16:11:54,581 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,581 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,581 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,581 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,581 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,581 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,582 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,582 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,582 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,582 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,582 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,582 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,582 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,582 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,583 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,583 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,583 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,583 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:12:26] 2025-07-27 16:11:54,583 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,583 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:12:26] 2025-07-27 16:11:54,584 | INFO     | job 6745065821 has completed (purged errors)
[2025-07-27 18:12:26] 2025-07-27 16:11:54,584 | INFO     | overall cleanup function is called
[2025-07-27 18:12:26] 2025-07-27 16:11:55,592 | INFO     | --- collectZombieJob: --- 10, [2894628]
[2025-07-27 18:12:26] 2025-07-27 16:11:55,592 | INFO     | zombie collector waiting for pid 2894628
[2025-07-27 18:12:26] 2025-07-27 16:11:55,592 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:12:26] 2025-07-27 16:11:55,593 | INFO     | collected zombie processes
[2025-07-27 18:12:26] 2025-07-27 16:11:55,593 | INFO     | will attempt to kill all subprocesses of pid=2894628
[2025-07-27 18:12:26] 2025-07-27 16:11:55,649 | INFO     | process IDs to be killed: [2894628] (in reverse order)
[2025-07-27 18:12:26] 2025-07-27 16:11:55,671 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:12:26] 2025-07-27 16:11:55,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:12:26] 2025-07-27 16:11:55,672 | INFO     | did not find any defunct processes belonging to 2894628
[2025-07-27 18:12:26] 2025-07-27 16:11:55,673 | INFO     | did not find any defunct processes belonging to 2894628
[2025-07-27 18:12:26] 2025-07-27 16:11:55,674 | INFO     | ready for new job
[2025-07-27 18:12:26] 2025-07-27 16:11:55,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:12:26] 2025-07-27 16:11:55,675 | INFO     | ***************************************
[2025-07-27 18:12:26] 2025-07-27 16:11:55,675 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:12:26] 2025-07-27 16:11:55,675 | INFO     | ***************************************
[2025-07-27 18:12:26] 2025-07-27 16:11:55,675 | INFO     | 
[2025-07-27 18:12:26] 2025-07-27 16:11:55,675 | INFO     | architecture information:
[2025-07-27 18:12:26] 2025-07-27 16:11:55,675 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:12:26] 2025-07-27 16:11:55,681 | INFO     | cat /etc/os-release:
[2025-07-27 18:12:26] NAME="CentOS Linux"
[2025-07-27 18:12:26] VERSION="7 (Core)"
[2025-07-27 18:12:26] ID="centos"
[2025-07-27 18:12:26] ID_LIKE="rhel fedora"
[2025-07-27 18:12:26] VERSION_ID="7"
[2025-07-27 18:12:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:12:26] ANSI_COLOR="0;31"
[2025-07-27 18:12:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:12:26] HOME_URL="https://www.centos.org/"
[2025-07-27 18:12:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:12:26] 
[2025-07-27 18:12:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:12:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:12:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:12:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:12:26] 
[2025-07-27 18:12:26] 2025-07-27 16:11:55,682 | INFO     | ***************************************
[2025-07-27 18:12:26] 2025-07-27 16:11:56,185 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-27 18:12:26] 2025-07-27 16:11:56,272 | INFO     | sufficient remaining disk space (267388977152 B)
[2025-07-27 18:12:26] 2025-07-27 16:11:56,272 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:12:26] 2025-07-27 16:11:56,273 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:12:26] 2025-07-27 16:11:56,273 | INFO     | update_server=False
[2025-07-27 18:12:26] 2025-07-27 16:11:56,273 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:12:26] 2025-07-27 16:11:56,274 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:12:26] 2025-07-27 16:11:56,274 | INFO     | aborting loop
[2025-07-27 18:12:26] 2025-07-27 16:11:56,498 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:12:26] 2025-07-27 16:11:56,547 | INFO     | all job control threads have been joined
[2025-07-27 18:12:26] 2025-07-27 16:11:56,718 | INFO     | all payload control threads have been joined
[2025-07-27 18:12:26] 2025-07-27 16:11:57,149 | INFO     | all data control threads have been joined
[2025-07-27 18:12:26] 2025-07-27 16:11:57,279 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:57,280 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:57,301 | INFO     | [job] validate thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:57,369 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:57,414 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:57,462 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:57,553 | INFO     | [job] control thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:57,724 | INFO     | [payload] control thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:57,825 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:58,080 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:58,155 | INFO     | [data] control thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:58,358 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:58,504 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:58,745 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:11:59,233 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:12:26] 2025-07-27 16:11:59,485 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:12:26] 2025-07-27 16:12:00,238 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:12:03,493 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:12:26] 2025-07-27 16:12:04,389 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140258987771712)>', '<ExcThread(monitor, started 140258498819840)>']
[2025-07-27 18:12:26] 2025-07-27 16:12:09,415 | INFO     | all workflow threads have been joined
[2025-07-27 18:12:26] 2025-07-27 16:12:09,415 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:12:26] 2025-07-27 16:12:09,415 | INFO     | traces error code: 0
[2025-07-27 18:12:26] 2025-07-27 16:12:09,416 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:12:26] 2025-07-27 16:12:26,771 | INFO     | PID=2888164 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:12:26] 2025-07-27 16:12:26,772 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:12:26] 2025-07-27 16:12:26,772 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:12:26] 2025-07-27 16:12:26,772 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:12:26] 2025-07-27 16:12:26,772 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:12:26] 2025-07-27 16:12:26,772 | INFO     | [monitor] control thread has ended
[2025-07-27 18:12:26] 2025-07-27 16:12:26,831 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:12:26] 2025-07-27 16:12:26,833 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:12:26] 2025-07-27 16:12:26,834 [wrapper] pilotpid: 2888164
[2025-07-27 18:12:26] 2025-07-27 16:12:26,836 [wrapper] Pilot exit status: 0
[2025-07-27 18:12:26] 2025-07-27 16:12:26,841 [wrapper] pandaids: 6745065821
[2025-07-27 18:12:26] 2025-07-27 16:12:26,855 [wrapper] cleanup supervisor_pilot 2906393 2888165
[2025-07-27 18:12:26] 2025-07-27 16:12:26,857 [wrapper] Test setup, not cleaning
[2025-07-27 18:12:26] 2025-07-27 16:12:26,858 [wrapper] apfmon messages muted
[2025-07-27 18:12:26] 2025-07-27 16:12:26,860 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:12:26] 2025-07-27 16:12:26,861 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:12:26]  *** Error codes and diagnostics ***
[2025-07-27 18:12:26]     "exeErrorCode": 0,
[2025-07-27 18:12:26]     "exeErrorDiag": "",
[2025-07-27 18:12:26]     "pilotErrorCode": 0,
[2025-07-27 18:12:26]     "pilotErrorDiag": "",
[2025-07-27 18:12:26]  *** Listing of results directory ***
[2025-07-27 18:12:26] insgesamt 358692
[2025-07-27 18:12:26] -rw-r--r-- 1 boinc boinc      5112 26. Jul 01:32 queuedata.json
[2025-07-27 18:12:26] -rw-r--r-- 1 boinc boinc    530466 26. Jul 01:32 pilot3.tar.gz
[2025-07-27 18:12:26] -rwx------ 1 boinc boinc     36292 26. Jul 01:33 runpilot2-wrapper.sh
[2025-07-27 18:12:26] -rw-r--r-- 1 boinc boinc       100 27. Jul 16:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:12:26] -rwxr-xr-x 1 boinc boinc      7986 27. Jul 16:43 run_atlas
[2025-07-27 18:12:26] -rw-r--r-- 1 boinc boinc       105 27. Jul 16:43 job.xml
[2025-07-27 18:12:26] -rw-r--r-- 1 boinc boinc      6722 27. Jul 16:43 init_data.xml
[2025-07-27 18:12:26] -rw-r--r-- 2 boinc boinc 143636262 27. Jul 16:43 EVNT.45743347._001609.pool.root.1
[2025-07-27 18:12:26] drwxrwx--x 2 boinc boinc      4096 27. Jul 16:43 shared
[2025-07-27 18:12:26] -rw-r--r-- 2 boinc boinc    542898 27. Jul 16:43 input.tar.gz
[2025-07-27 18:12:26] -rw-r--r-- 2 boinc boinc     15095 27. Jul 16:43 start_atlas.sh
[2025-07-27 18:12:26] -rw-r--r-- 1 boinc boinc         0 27. Jul 16:43 boinc_lockfile
[2025-07-27 18:12:26] -rw-r--r-- 1 boinc boinc      2563 27. Jul 16:43 pandaJob.out
[2025-07-27 18:12:26] -rw------- 1 boinc boinc    980109 27. Jul 16:43 agis_schedconf.cvmfs.json
[2025-07-27 18:12:26] -rw------- 1 boinc boinc   1593052 27. Jul 16:43 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:12:26] drwx------ 4 boinc boinc      4096 27. Jul 16:43 pilot3
[2025-07-27 18:12:26] -rw------- 1 boinc boinc 218229364 27. Jul 18:11 HITS.45743349._028761.pool.root.1
[2025-07-27 18:12:26] -rw-r--r-- 1 boinc boinc       529 27. Jul 18:11 boinc_task_state.xml
[2025-07-27 18:12:26] -rw------- 1 boinc boinc      1021 27. Jul 18:11 memory_monitor_summary.json
[2025-07-27 18:12:26] -rw------- 1 boinc boinc    272459 27. Jul 18:11 log.45743349._028761.job.log.tgz.1
[2025-07-27 18:12:26] -rw------- 1 boinc boinc      7752 27. Jul 18:11 heartbeat.json
[2025-07-27 18:12:26] -rw-r--r-- 1 boinc boinc      8192 27. Jul 18:12 boinc_mmap_file
[2025-07-27 18:12:26] -rw-r--r-- 1 boinc boinc        27 27. Jul 18:12 wrapper_checkpoint.txt
[2025-07-27 18:12:26] -rw------- 1 boinc boinc       747 27. Jul 18:12 pilotlog.txt
[2025-07-27 18:12:26] -rw------- 1 boinc boinc        95 27. Jul 18:12 pilot_heartbeat.json
[2025-07-27 18:12:26] -rw------- 1 boinc boinc    506215 27. Jul 18:12 log.45743349._028761.job.log.1
[2025-07-27 18:12:26] -rw------- 1 boinc boinc       357 27. Jul 18:12 output.list
[2025-07-27 18:12:26] -rw-r--r-- 1 boinc boinc       620 27. Jul 18:12 runtime_log
[2025-07-27 18:12:26] -rw------- 1 boinc boinc    798720 27. Jul 18:12 result.tar.gz
[2025-07-27 18:12:26] -rw-r--r-- 1 boinc boinc      8602 27. Jul 18:12 runtime_log.err
[2025-07-27 18:12:26] -rw------- 1 boinc boinc       639 27. Jul 18:12 qzILDmE6gz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmulzKDmmcwFvn.diag
[2025-07-27 18:12:26] -rw-r--r-- 1 boinc boinc     21192 27. Jul 18:12 stderr.txt
[2025-07-27 18:12:26] HITS file was successfully produced:
[2025-07-27 18:12:26] -rw------- 1 boinc boinc 218229364 27. Jul 18:11 shared/HITS.pool.root.1
[2025-07-27 18:12:26]  *** Contents of shared directory: ***
[2025-07-27 18:12:26] insgesamt 354724
[2025-07-27 18:12:26] -rw-r--r-- 2 boinc boinc 143636262 27. Jul 16:43 ATLAS.root_0
[2025-07-27 18:12:26] -rw-r--r-- 2 boinc boinc    542898 27. Jul 16:43 input.tar.gz
[2025-07-27 18:12:26] -rw-r--r-- 2 boinc boinc     15095 27. Jul 16:43 start_atlas.sh
[2025-07-27 18:12:26] -rw------- 1 boinc boinc 218229364 27. Jul 18:11 HITS.pool.root.1
[2025-07-27 18:12:26] -rw------- 1 boinc boinc    798720 27. Jul 18:12 result.tar.gz
18:12:27 (2884536): run_atlas exited; CPU time 30286.994729
18:12:27 (2884536): called boinc_finish(0)

</stderr_txt>
]]>

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