Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-26 01:32:54 (9860): Detected: vboxwrapper 26206
2025-07-26 01:32:54 (9860): Detected: BOINC client v8.0.2
2025-07-26 01:32:55 (9860): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-07-26 01:32:55 (9860): Successfully copied 'init_data.xml' to the shared directory.
2025-07-26 01:32:56 (9860): Create VM. (boinc_61a6378ccf0f724d, slot#4)
2025-07-26 01:32:56 (9860): Setting Memory Size for VM. (4400MB)
2025-07-26 01:32:56 (9860): Setting CPU Count for VM. (4)
2025-07-26 01:32:57 (9860): Setting Chipset Options for VM.
2025-07-26 01:32:57 (9860): Setting Graphics Controller Options for VM.
2025-07-26 01:32:57 (9860): Setting Boot Options for VM.
2025-07-26 01:32:58 (9860): Setting Network Configuration for NAT.
2025-07-26 01:32:58 (9860): Enabling VM Network Access.
2025-07-26 01:32:58 (9860): Disabling USB Support for VM.
2025-07-26 01:32:58 (9860): Disabling COM Port Support for VM.
2025-07-26 01:32:59 (9860): Disabling LPT Port Support for VM.
2025-07-26 01:32:59 (9860): Disabling Audio Support for VM.
2025-07-26 01:32:59 (9860): Disabling Clipboard Support for VM.
2025-07-26 01:32:59 (9860): Disabling Drag and Drop Support for VM.
2025-07-26 01:33:00 (9860): Adding storage controller(s) to VM.
2025-07-26 01:33:00 (9860): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-26 01:33:03 (9860): Adding VirtualBox Guest Additions to VM.
2025-07-26 01:33:03 (9860): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-26 01:33:03 (9860): forwarding host port 52899 to guest port 80
2025-07-26 01:33:04 (9860): Enabling remote desktop for VM.
2025-07-26 01:33:04 (9860): Required extension pack not installed, remote desktop not enabled.
2025-07-26 01:33:04 (9860): Enabling shared directory for VM.
2025-07-26 01:33:05 (9860): Starting VM using VBoxManage interface. (boinc_61a6378ccf0f724d, slot#4)
2025-07-26 01:33:14 (9860): Successfully started VM. (PID = '4428')
2025-07-26 01:33:14 (9860): Reporting VM Process ID to BOINC.
2025-07-26 01:33:14 (9860): Guest Log: BIOS: VirtualBox 7.0.6
2025-07-26 01:33:14 (9860): Guest Log: CPUID EDX: 0x178bfbff
2025-07-26 01:33:14 (9860): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-26 01:33:14 (9860): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-26 01:33:14 (9860): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-26 01:33:14 (9860): Detected: Web Application Enabled (http://localhost:52899)
2025-07-26 01:33:14 (9860): Preference change detected
2025-07-26 01:33:14 (9860): Setting CPU throttle for VM. (80%)
2025-07-26 01:33:14 (9860): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 01:33:16 (9860): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-26 01:33:16 (9860): Guest Log: BIOS: Booting from Hard Disk...
2025-07-26 01:33:19 (9860): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-26 01:33:19 (9860): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-26 01:33:19 (9860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-26 01:33:59 (9860): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:34:19 (9860): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:34:20 (9860): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-26 01:34:20 (9860): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-26 01:34:27 (9860): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-26 01:34:27 (9860): Guest Log: 00:00:00.000203 main     Log opened 2025-07-26T01:34:06.061701000Z
2025-07-26 01:34:27 (9860): Guest Log: 00:00:00.000383 main     OS Product: Linux
2025-07-26 01:34:27 (9860): Guest Log: 00:00:00.000425 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-26 01:34:27 (9860): Guest Log: 00:00:00.000462 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-26 01:34:27 (9860): Guest Log: 00:00:00.000498 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-26 01:34:27 (9860): Guest Log: 00:00:00.000499 main     Process ID: 1266
2025-07-26 01:34:27 (9860): Guest Log: 00:00:00.000500 main     Package type: LINUX_64BITS_GENERIC
2025-07-26 01:34:27 (9860): Guest Log: 00:00:00.001667 main     5.2.32 r132073 started. Verbose level = 0
2025-07-26 01:34:27 (9860): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-26 01:34:27 (9860): Guest Log: [INFO] Mounting shared directory
2025-07-26 01:34:27 (9860): Guest Log: [INFO] Checking for init_data.xml
2025-07-26 01:34:29 (9860): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:34:49 (9860): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:34:50 (9860): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-26 01:34:50 (9860): Guest Log: [INFO] Detected branch: prod
2025-07-26 01:34:50 (9860): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-26 01:34:50 (9860): Guest Log: Copying input files
2025-07-26 01:34:53 (9860): Guest Log: Copied input files into RunAtlas.
2025-07-26 01:34:53 (9860): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-26 01:34:53 (9860): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-26 01:34:53 (9860): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-26 01:34:53 (9860): Guest Log: Further information can be found at the LHC@home message board.
2025-07-26 01:34:57 (9860): Guest Log: 00:00:10.004919 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 391 417 570 000ns (GuestNow=1 753 508 037 482 451 000 ns GuestLast=1 753 493 646 064 881 000 ns fSetTimeLastLoop=true )
2025-07-26 01:35:03 (9860): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-26 01:35:03 (9860): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-26 01:35:03 (9860): Guest Log: 2.6.3.0 1543 0 32112 148765 3 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-26 01:35:04 (9860): Guest Log: copied the webapp to /var/www
2025-07-26 01:35:04 (9860): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-26 01:35:04 (9860): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-26 01:35:05 (9860): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-26 01:35:05 (9860): Guest Log:  *** Starting ATLAS job. (PandaID=6741674260 taskID=45697453) ***
2025-07-26 01:36:59 (9860): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:37:19 (9860): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:37:49 (9860): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:38:09 (9860): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:38:19 (9860): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:38:39 (9860): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:38:59 (9860): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:39:19 (9860): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:39:29 (9860): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:39:49 (9860): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:40:09 (9860): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:40:29 (9860): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:40:49 (9860): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:41:09 (9860): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:41:29 (9860): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:41:49 (9860): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:42:09 (9860): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:42:49 (9860): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:42:59 (9860): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:43:19 (9860): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:43:29 (9860): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 01:43:49 (9860): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 01:47:36 (9860): Guest Log:  *** Job finished ***
2025-07-26 01:47:36 (9860): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:20,022 | INFO     | all workflow threads have been joined
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:20,023 | INFO     | end of generic workflow (traces error code: 0)
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:20,023 | INFO     | traces error code: 0
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:20,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,425 | INFO     | PID=5884 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,426 | INFO     | found 0 job(s) in 20 queues
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,427 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,427 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,427 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,427 | INFO     | [monitor] control thread has ended
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,589 [wrapper] ==== pilot stdout END ====
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,597 [wrapper] ==== wrapper stdout RESUME ====
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,604 [wrapper] pilotpid: 5884
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,611 [wrapper] Pilot exit status: 0
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,744 [wrapper] pandaids: 6741674260
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,785 [wrapper] cleanup supervisor_pilot  5890 5885
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,793 [wrapper] Test setup, not cleaning
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,801 [wrapper] apfmon messages muted
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,808 [wrapper] ==== wrapper stdout END ====
2025-07-26 01:47:36 (9860): Guest Log: 2025-07-26 05:42:36,816 [wrapper] ==== wrapper stderr END ====
2025-07-26 01:47:36 (9860): Guest Log:  *** Error codes and diagnostics ***
2025-07-26 01:47:36 (9860): Guest Log:     "exeErrorCode": 65,
2025-07-26 01:47:36 (9860): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-07-26 01:47:36 (9860): Guest Log:     "pilotErrorCode": 1305,
2025-07-26 01:47:36 (9860): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-07-26 01:47:36 (9860): Guest Log:  *** Listing of results directory ***
2025-07-26 01:47:36 (9860): Guest Log: total 4040
2025-07-26 01:47:36 (9860): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 21 20:13 pilot3.tar.gz
2025-07-26 01:47:36 (9860): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 21 20:16 queuedata.json
2025-07-26 01:47:36 (9860): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 21 20:17 runpilot2-wrapper.sh
2025-07-26 01:47:36 (9860): Guest Log: -rwxr-xr-x. 1 atlas atlas    8821 Jul 26 05:33 init_data.xml
2025-07-26 01:47:36 (9860): Guest Log: -rwxr-xr-x. 1 atlas atlas  542906 Jul 26 05:33 input.tar.gz
2025-07-26 01:47:36 (9860): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 26 05:33 start_atlas.sh
2025-07-26 01:47:36 (9860): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 26 05:33 EVNT.45697451._000016.pool.root.1 -> /data/./ATLAS.root_0
2025-07-26 01:47:36 (9860): Guest Log: -rw-r--r--. 1 atlas atlas    2632 Jul 26 05:34 pandaJob.out
2025-07-26 01:47:36 (9860): Guest Log: -rw-------. 1 atlas atlas  980001 Jul 26 05:35 agis_schedconf.cvmfs.json
2025-07-26 01:47:36 (9860): Guest Log: -rw-------. 1 atlas atlas 1593052 Jul 26 05:35 agis_ddmendpoints.agis.ALL.json
2025-07-26 01:47:36 (9860): Guest Log: drwx------. 4 atlas atlas    4096 Jul 26 05:35 pilot3
2025-07-26 01:47:36 (9860): Guest Log: -rw-------. 1 atlas atlas   46118 Jul 26 05:39 log.45697453._000385.job.log.tgz.1
2025-07-26 01:47:36 (9860): Guest Log: -rw-------. 1 atlas atlas    8053 Jul 26 05:42 heartbeat.json
2025-07-26 01:47:36 (9860): Guest Log: -rw-------. 1 atlas atlas     744 Jul 26 05:42 pilotlog.txt
2025-07-26 01:47:36 (9860): Guest Log: -rw-------. 1 atlas atlas      95 Jul 26 05:42 pilot_heartbeat.json
2025-07-26 01:47:36 (9860): Guest Log: -rw-------. 1 atlas atlas  123352 Jul 26 05:42 log.45697453._000385.job.log.1
2025-07-26 01:47:36 (9860): Guest Log: -rw-------. 1 atlas atlas     188 Jul 26 05:42 output.list
2025-07-26 01:47:36 (9860): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 26 05:42 runtime_log
2025-07-26 01:47:36 (9860): Guest Log: -rw-------. 1 atlas atlas  184320 Jul 26 05:42 result.tar.gz
2025-07-26 01:47:36 (9860): Guest Log: -rw-r--r--. 1 atlas atlas    8467 Jul 26 05:42 runtime_log.err
2025-07-26 01:47:36 (9860): Guest Log: -rw-------. 1 atlas atlas     651 Jul 26 05:42 bYAMDm37By7n9Rq4apOajLDm4fhM0noT9bVof3QYDmpysKDmbvmvSn.diag
2025-07-26 01:47:36 (9860): Guest Log: Looking for outputfile HITS.45697453._000385.pool.root.1
2025-07-26 01:47:36 (9860): Guest Log: No HITS file was produced
2025-07-26 01:47:36 (9860): Guest Log: Successfully finished the ATLAS job!
2025-07-26 01:47:36 (9860): Guest Log: Copying the results back to the shared directory!
2025-07-26 01:47:36 (9860): Guest Log:  *** Contents of shared directory: ***
2025-07-26 01:47:36 (9860): Guest Log: total 313200
2025-07-26 01:47:36 (9860): Guest Log: -rwxrwxrwx. 1 root root 319956719 Jul 26 05:32 ATLAS.root_0
2025-07-26 01:47:36 (9860): Guest Log: -rwxrwxrwx. 1 root root      8821 Jul 26 05:32 init_data.xml
2025-07-26 01:47:36 (9860): Guest Log: -rwxrwxrwx. 1 root root    542906 Jul 26 05:32 input.tar.gz
2025-07-26 01:47:36 (9860): Guest Log: -rwxrwxrwx. 1 root root    184320 Jul 26  2025 result.tar.gz
2025-07-26 01:47:36 (9860): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 26 05:32 start_atlas.sh
2025-07-26 01:47:36 (9860): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-26 01:47:36 (9860): VM Completion File Detected.
2025-07-26 01:47:36 (9860): Powering off VM.
2025-07-26 01:47:37 (9860): Successfully stopped VM.
2025-07-26 01:47:37 (9860): Deregistering VM. (boinc_61a6378ccf0f724d, slot#4)
2025-07-26 01:47:37 (9860): Removing network bandwidth throttle group from VM.
2025-07-26 01:47:37 (9860): Removing VM from VirtualBox.
01:47:43 (9860): called boinc_finish(0)

</stderr_txt>
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