Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:43:37 (211680): wrapper (7.7.26015): starting
00:43:37 (211680): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 00:43:37] Arguments: --nthreads 8
[2025-07-26 00:43:37] Threads: 8
[2025-07-26 00:43:37] Checking for CVMFS
[2025-07-26 00:43:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 00:43:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 00:43:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 00:43:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 00:43:37] 2.13.1.0 2445429 2428 79392 148764 2 188 34456137 40960001 13740 16776704 0 37721531 99.999 89669 62183 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 00:43:37] CVMFS is ok
[2025-07-26 00:43:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 00:43:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 00:43:37] Further information can be found at the LHC@home message board.
[2025-07-26 00:43:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 00:43:37] Checking for apptainer binary...
[2025-07-26 00:43:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 00:43:37] Running /usr/bin/apptainer --version
[2025-07-26 00:43:37] apptainer version 1.4.1-1.el9
[2025-07-26 00:43:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 00:43:37] c-208-40.aglt2.org
[2025-07-26 00:43:37] apptainer works
[2025-07-26 00:43:37] Set ATHENA_PROC_NUMBER=8
[2025-07-26 00:43:37] Set ATHENA_CORE_NUMBER=8
[2025-07-26 00:43:37] Starting ATLAS job with PandaID=6745064107
[2025-07-26 00:43:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 01:40:28]  *** The last 200 lines of the pilot log: ***
[2025-07-26 01:40:28]  replicas=None
[2025-07-26 01:40:28]  scope=mc23_13p6TeV
[2025-07-26 01:40:28]  status=None
[2025-07-26 01:40:28]  status_code=0
[2025-07-26 01:40:28]  storage_token=
[2025-07-26 01:40:28]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6745064107/log.45743349._028295.job.log.tgz.1
[2025-07-26 01:40:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e2/42/log.45743349._028295.job.log.tgz.1
[2025-07-26 01:40:28]  workdir=None
[2025-07-26 01:40:28] ]
[2025-07-26 01:40:28] 2025-07-26 05:39:48,364 | INFO     | transferring file log.45743349._028295.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6745064107/log.45743349._028295.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 01:40:28] 2025-07-26 05:39:48,364 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6745064107/log.45743349._028295.job.log.tgz.1 /tmp/boinchome/slots/5/log.45743349._028295.job
[2025-07-26 01:40:28] 2025-07-26 05:39:48,387 | INFO     | adding to output.list: log.45743349._028295.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e2/42/log.45743349._028295.job.log.tg
[2025-07-26 01:40:28] 2025-07-26 05:39:48,388 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 01:40:28] 2025-07-26 05:39:48,388 | INFO     | summary of transferred files:
[2025-07-26 01:40:28] 2025-07-26 05:39:48,388 | INFO     |  -- lfn=log.45743349._028295.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 01:40:28] 2025-07-26 05:39:48,388 | INFO     | stage-out finished correctly
[2025-07-26 01:40:28] 2025-07-26 05:39:48,673 | WARNING  | process 221742 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 01:40:28] 2025-07-26 05:39:48,673 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6745064107/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 01:40:28] 2025-07-26 05:39:49,015 | INFO     | number of running child processes to parent process 221742: 1
[2025-07-26 01:40:28] 2025-07-26 05:39:49,015 | INFO     | maximum number of monitored processes: 6
[2025-07-26 01:40:28] 2025-07-26 05:39:49,452 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 01:40:28] 2025-07-26 05:39:51,083 | INFO     | job 6745064107 has state=finished
[2025-07-26 01:40:28] 2025-07-26 05:39:51,083 | INFO     | preparing for final server update for job 6745064107 in state='finished'
[2025-07-26 01:40:28] 2025-07-26 05:39:51,083 | INFO     | this job has now completed (state=finished)
[2025-07-26 01:40:28] 2025-07-26 05:39:51,083 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 01:40:28] 2025-07-26 05:39:51,083 | INFO     | log transfer has been attempted: DONE
[2025-07-26 01:40:28] 2025-07-26 05:39:51,084 | INFO     | job 6745064107 has finished - writing final server update
[2025-07-26 01:40:28] 2025-07-26 05:39:51,084 | INFO     | total number of processed events: 400 (read)
[2025-07-26 01:40:28] 2025-07-26 05:39:51,084 | INFO     | executing command: lscpu
[2025-07-26 01:40:28] 2025-07-26 05:39:51,138 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 01:40:28] 2025-07-26 05:39:51,517 | INFO     | monitor loop #245: job 0:6745064107 is in state 'finished'
[2025-07-26 01:40:28] 2025-07-26 05:39:51,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:40:28] 2025-07-26 05:39:53,237 | INFO     | PID=215329 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 01:40:28] 2025-07-26 05:39:53,237 | INFO     | .. there are 16 such processes running
[2025-07-26 01:40:28] 2025-07-26 05:39:54,022 | INFO     | monitor loop #246: job 0:6745064107 is in state 'finished'
[2025-07-26 01:40:28] 2025-07-26 05:39:54,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:40:28] 2025-07-26 05:39:54,972 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 01:40:28] 2025-07-26 05:39:54,976 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.7132265624996
[2025-07-26 01:40:28] 2025-07-26 05:39:54,989 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6745064107/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 01:40:28] 2025-07-26 05:39:54,990 | INFO     | extracted standard info from prmon json
[2025-07-26 01:40:28] 2025-07-26 05:39:54,990 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 01:40:28] 2025-07-26 05:39:54,990 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 01:40:28] 2025-07-26 05:39:54,990 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 01:40:28] 2025-07-26 05:39:54,990 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 01:40:28] 2025-07-26 05:39:54,991 | INFO     | fitting pss+swap vs Time
[2025-07-26 01:40:28] 2025-07-26 05:39:54,991 | INFO     | sum of square deviations: 34277852.0
[2025-07-26 01:40:28] 2025-07-26 05:39:54,991 | INFO     | sum of deviations: -348373074.00000006
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | mean x: 1753506789.5
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | mean y: 2529997.7083333335
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | -- intersect: 17823791100.591503
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | intersect: 17823791100.591503
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | chi2: 0.0006140868663729147
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | -- intersect: 17823791100.591503
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | current memory leak: -10.16 B/s (using 48 data points, chi2=0.00)
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | could have reported an average CPU frequency of 3799 MHz (5 samples)
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | ..............................
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | . Timing measurements:
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | . get job = 0 s
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | . initial setup = 2 s
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | . payload setup = 5 s
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | . stage-in = 0 s
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | . payload execution = 3337 s
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | . stage-out = 0 s
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | . log creation = 0 s
[2025-07-26 01:40:28] 2025-07-26 05:39:54,992 | INFO     | ..............................
[2025-07-26 01:40:28] 2025-07-26 05:39:55,417 | INFO     | 
[2025-07-26 01:40:28] 2025-07-26 05:39:55,417 | INFO     | job summary report
[2025-07-26 01:40:28] 2025-07-26 05:39:55,417 | INFO     | --------------------------------------------------
[2025-07-26 01:40:28] 2025-07-26 05:39:55,417 | INFO     | PanDA job id: 6745064107
[2025-07-26 01:40:28] 2025-07-26 05:39:55,417 | INFO     | task id: 45743349
[2025-07-26 01:40:28] 2025-07-26 05:39:55,417 | INFO     | errors: (none)
[2025-07-26 01:40:28] 2025-07-26 05:39:55,417 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 01:40:28] 2025-07-26 05:39:55,417 | INFO     | pilot state: finished 
[2025-07-26 01:40:28] 2025-07-26 05:39:55,417 | INFO     | transexitcode: 0
[2025-07-26 01:40:28] 2025-07-26 05:39:55,417 | INFO     | exeerrorcode: 0
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | exeerrordiag: 
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | exitcode: 0
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | exitmsg: OK
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | cpuconsumptiontime: 24851 s
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | nevents: 400
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | neventsw: 0
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | pid: 221742
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | pgrp: 221742
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | corecount: 8
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | event service: False
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | sizes: {0: 2397475, 4: 2397737, 11: 2397765, 3346: 2423440, 3348: 2432438, 3349: 2432494, 3354: 2432848}
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | --------------------------------------------------
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | 
[2025-07-26 01:40:28] 2025-07-26 05:39:55,418 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-07-26 01:40:28] 2025-07-26 05:39:55,436 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 01:40:28] 2025-07-26 05:39:55,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,438 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 01:40:28] 2025-07-26 05:39:55,438 | INFO     | job 6745064107 has completed (purged errors)
[2025-07-26 01:40:28] 2025-07-26 05:39:55,438 | INFO     | overall cleanup function is called
[2025-07-26 01:40:28] 2025-07-26 05:39:56,446 | INFO     | --- collectZombieJob: --- 10, [221742]
[2025-07-26 01:40:28] 2025-07-26 05:39:56,446 | INFO     | zombie collector waiting for pid 221742
[2025-07-26 01:40:28] 2025-07-26 05:39:56,446 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 01:40:28] 2025-07-26 05:39:56,447 | INFO     | collected zombie processes
[2025-07-26 01:40:28] 2025-07-26 05:39:56,447 | INFO     | will attempt to kill all subprocesses of pid=221742
[2025-07-26 01:40:28] 2025-07-26 05:39:56,807 | INFO     | process IDs to be killed: [221742] (in reverse order)
[2025-07-26 01:40:28] 2025-07-26 05:39:56,933 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 01:40:28] 2025-07-26 05:39:56,933 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 01:40:28] 2025-07-26 05:39:56,958 | INFO     | did not find any defunct processes belonging to 221742
[2025-07-26 01:40:28] 2025-07-26 05:39:56,975 | INFO     | did not find any defunct processes belonging to 221742
[2025-07-26 01:40:28] 2025-07-26 05:39:56,975 | INFO     | ready for new job
[2025-07-26 01:40:28] 2025-07-26 05:39:56,975 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 01:40:28] 2025-07-26 05:39:56,977 | INFO     | ***************************************
[2025-07-26 01:40:28] 2025-07-26 05:39:56,977 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 01:40:28] 2025-07-26 05:39:56,977 | INFO     | ***************************************
[2025-07-26 01:40:28] 2025-07-26 05:39:56,977 | INFO     | 
[2025-07-26 01:40:28] 2025-07-26 05:39:56,982 | INFO     | architecture information:
[2025-07-26 01:40:28] 2025-07-26 05:39:56,982 | INFO     | executing command: cat /etc/os-release
[2025-07-26 01:40:28] 2025-07-26 05:39:56,997 | INFO     | cat /etc/os-release:
[2025-07-26 01:40:28] NAME="CentOS Linux"
[2025-07-26 01:40:28] VERSION="7 (Core)"
[2025-07-26 01:40:28] ID="centos"
[2025-07-26 01:40:28] ID_LIKE="rhel fedora"
[2025-07-26 01:40:28] VERSION_ID="7"
[2025-07-26 01:40:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 01:40:28] ANSI_COLOR="0;31"
[2025-07-26 01:40:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 01:40:28] HOME_URL="https://www.centos.org/"
[2025-07-26 01:40:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 01:40:28] 
[2025-07-26 01:40:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 01:40:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 01:40:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 01:40:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 01:40:28] 
[2025-07-26 01:40:28] 2025-07-26 05:39:56,997 | INFO     | ***************************************
[2025-07-26 01:40:28] 2025-07-26 05:39:57,500 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-07-26 01:40:28] 2025-07-26 05:39:57,519 | INFO     | sufficient remaining disk space (166912327680 B)
[2025-07-26 01:40:28] 2025-07-26 05:39:57,519 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 01:40:28] 2025-07-26 05:39:57,519 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 01:40:28] 2025-07-26 05:39:57,519 | INFO     | update_server=False
[2025-07-26 01:40:28] 2025-07-26 05:39:57,519 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 01:40:28] 2025-07-26 05:39:57,535 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 01:40:28] 2025-07-26 05:39:57,535 | INFO     | aborting loop
[2025-07-26 01:40:28] 2025-07-26 05:39:57,670 | INFO     | all data control threads have been joined
[2025-07-26 01:40:28] 2025-07-26 05:39:57,829 | INFO     | all payload control threads have been joined
[2025-07-26 01:40:28] 2025-07-26 05:39:58,234 | INFO     | all job control threads have been joined
[2025-07-26 01:40:28] 2025-07-26 05:39:58,525 | INFO     | [job] retrieve thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:39:58,540 | INFO     | [job] job monitor thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:39:58,588 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:39:58,676 | INFO     | [data] control thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:39:58,834 | INFO     | [payload] control thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:39:58,942 | INFO     | [payload] failed_post thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:39:58,963 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 01:40:28] 2025-07-26 05:39:59,109 | INFO     | [data] copytool_in thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:39:59,240 | INFO     | [job] control thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:39:59,402 | INFO     | [job] validate thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:39:59,481 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:39:59,514 | INFO     | [payload] validate_post thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:39:59,595 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:40:00,026 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 01:40:28] 2025-07-26 05:40:00,057 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 01:40:28] 2025-07-26 05:40:00,964 | INFO     | [data] copytool_out thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:40:01,058 | INFO     | [job] queue monitor thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:40:04,033 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:40:08,177 | INFO     | job.realtimelogging is not enabled
[2025-07-26 01:40:28] 2025-07-26 05:40:09,182 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 01:40:28] 2025-07-26 05:40:10,337 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139963320948544)>', '<ExcThread(monitor, started 139962808772352)>']
[2025-07-26 01:40:28] 2025-07-26 05:40:15,356 | INFO     | all workflow threads have been joined
[2025-07-26 01:40:28] 2025-07-26 05:40:15,356 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 01:40:28] 2025-07-26 05:40:15,357 | INFO     | traces error code: 0
[2025-07-26 01:40:28] 2025-07-26 05:40:15,357 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 01:40:28] 2025-07-26 05:40:27,781 | INFO     | PID=215329 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 01:40:28] 2025-07-26 05:40:27,781 | INFO     | .. there are 16 such processes running
[2025-07-26 01:40:28] 2025-07-26 05:40:27,782 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 01:40:28] 2025-07-26 05:40:27,782 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 01:40:28] 2025-07-26 05:40:27,782 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 01:40:28] 2025-07-26 05:40:27,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 01:40:28] 2025-07-26 05:40:27,782 | INFO     | [monitor] control thread has ended
[2025-07-26 01:40:28] 2025-07-26 05:40:27,872 [wrapper] ==== pilot stdout END ====
[2025-07-26 01:40:28] 2025-07-26 05:40:27,874 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 01:40:28] 2025-07-26 05:40:27,877 [wrapper] pilotpid: 215329
[2025-07-26 01:40:28] 2025-07-26 05:40:27,880 [wrapper] Pilot exit status: 0
[2025-07-26 01:40:28] 2025-07-26 05:40:27,890 [wrapper] pandaids: 6745064107
[2025-07-26 01:40:28] 2025-07-26 05:40:27,973 [wrapper] cleanup supervisor_pilot  512435 215330
[2025-07-26 01:40:28] 2025-07-26 05:40:27,977 [wrapper] Test setup, not cleaning
[2025-07-26 01:40:28] 2025-07-26 05:40:27,979 [wrapper] apfmon messages muted
[2025-07-26 01:40:28] 2025-07-26 05:40:27,982 [wrapper] ==== wrapper stdout END ====
[2025-07-26 01:40:28] 2025-07-26 05:40:27,984 [wrapper] ==== wrapper stderr END ====
[2025-07-26 01:40:28]  *** Error codes and diagnostics ***
[2025-07-26 01:40:28]     "exeErrorCode": 0,
[2025-07-26 01:40:28]     "exeErrorDiag": "",
[2025-07-26 01:40:28]     "pilotErrorCode": 0,
[2025-07-26 01:40:28]     "pilotErrorDiag": "",
[2025-07-26 01:40:28]  *** Listing of results directory ***
[2025-07-26 01:40:28] total 357972
[2025-07-26 01:40:28] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 18:32 pilot3.tar.gz
[2025-07-26 01:40:28] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 18:51 queuedata.json
[2025-07-26 01:40:28] -rwx------. 1 boincer umatlas     36292 Jul 25 18:52 runpilot2-wrapper.sh
[2025-07-26 01:40:28] -rw-r--r--. 1 boincer umatlas       100 Jul 26 00:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 01:40:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 00:43 run_atlas
[2025-07-26 01:40:28] -rw-r--r--. 1 boincer umatlas       105 Jul 26 00:43 job.xml
[2025-07-26 01:40:28] -rw-r--r--. 2 boincer umatlas 149657007 Jul 26 00:43 EVNT.45743347._001578.pool.root.1
[2025-07-26 01:40:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 00:43 start_atlas.sh
[2025-07-26 01:40:28] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 00:43 shared
[2025-07-26 01:40:28] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 00:43 input.tar.gz
[2025-07-26 01:40:28] -rw-r--r--. 1 boincer umatlas         0 Jul 26 00:43 boinc_lockfile
[2025-07-26 01:40:28] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 00:43 pandaJob.out
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas    980001 Jul 26 00:43 agis_schedconf.cvmfs.json
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas   1593052 Jul 26 00:43 agis_ddmendpoints.agis.ALL.json
[2025-07-26 01:40:28] drwx------. 4 boincer umatlas      4096 Jul 26 00:43 pilot3
[2025-07-26 01:40:28] -rw-r--r--. 1 boincer umatlas      7172 Jul 26 01:31 init_data.xml
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas 211760091 Jul 26 01:39 HITS.45743349._028295.pool.root.1
[2025-07-26 01:40:28] -rw-r--r--. 1 boincer umatlas       529 Jul 26 01:39 boinc_task_state.xml
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas      1028 Jul 26 01:39 memory_monitor_summary.json
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas    294602 Jul 26 01:39 log.45743349._028295.job.log.tgz.1
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas      7769 Jul 26 01:39 heartbeat.json
[2025-07-26 01:40:28] -rw-r--r--. 1 boincer umatlas        27 Jul 26 01:40 wrapper_checkpoint.txt
[2025-07-26 01:40:28] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 01:40 boinc_mmap_file
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas        95 Jul 26 01:40 pilot_heartbeat.json
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas       822 Jul 26 01:40 pilotlog.txt
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas    343771 Jul 26 01:40 log.45743349._028295.job.log.1
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas       357 Jul 26 01:40 output.list
[2025-07-26 01:40:28] -rw-r--r--. 1 boincer umatlas       620 Jul 26 01:40 runtime_log
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas    655360 Jul 26 01:40 result.tar.gz
[2025-07-26 01:40:28] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 01:40 runtime_log.err
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas       651 Jul 26 01:40 erHMDmJSgz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIjzKDm6waO2n.diag
[2025-07-26 01:40:28] -rw-r--r--. 1 boincer umatlas     21947 Jul 26 01:40 stderr.txt
[2025-07-26 01:40:28] HITS file was successfully produced:
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas 211760091 Jul 26 01:39 shared/HITS.pool.root.1
[2025-07-26 01:40:28]  *** Contents of shared directory: ***
[2025-07-26 01:40:28] total 354144
[2025-07-26 01:40:28] -rw-r--r--. 2 boincer umatlas 149657007 Jul 26 00:43 ATLAS.root_0
[2025-07-26 01:40:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 00:43 start_atlas.sh
[2025-07-26 01:40:28] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 00:43 input.tar.gz
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas 211760091 Jul 26 01:39 HITS.pool.root.1
[2025-07-26 01:40:28] -rw-------. 1 boincer umatlas    655360 Jul 26 01:40 result.tar.gz
01:40:29 (211680): run_atlas exited; CPU time 24934.439700
01:40:29 (211680): called boinc_finish(0)

</stderr_txt>
]]>

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