Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:39:45 (372726): wrapper (7.7.26015): starting
00:39:45 (372726): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 00:39:45] Arguments: --nthreads 8
[2025-07-26 00:39:45] Threads: 8
[2025-07-26 00:39:45] Checking for CVMFS
[2025-07-26 00:39:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 00:39:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 00:39:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 00:39:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 00:39:46] 2.13.1.0 116762 6485 203532 148764 0 188 34408794 40960001 12907 16776704 0 84778404 99.998 262824 35700 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 00:39:46] CVMFS is ok
[2025-07-26 00:39:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 00:39:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 00:39:46] Further information can be found at the LHC@home message board.
[2025-07-26 00:39:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 00:39:46] Checking for apptainer binary...
[2025-07-26 00:39:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 00:39:46] Running /usr/bin/apptainer --version
[2025-07-26 00:39:46] apptainer version 1.4.1-1.el9
[2025-07-26 00:39:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 00:39:46] c-208-39.aglt2.org
[2025-07-26 00:39:46] apptainer works
[2025-07-26 00:39:46] Set ATHENA_PROC_NUMBER=8
[2025-07-26 00:39:46] Set ATHENA_CORE_NUMBER=8
[2025-07-26 00:39:46] Starting ATLAS job with PandaID=6745063445
[2025-07-26 00:39:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 01:36:38]  *** The last 200 lines of the pilot log: ***
[2025-07-26 01:36:38]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-26 01:36:38]  is_altstaged=None
[2025-07-26 01:36:38]  is_tar=False
[2025-07-26 01:36:38]  lfn=log.45743349._028082.job.log.tgz.1
[2025-07-26 01:36:38]  mtime=0
[2025-07-26 01:36:38]  protocol_id=None
[2025-07-26 01:36:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 01:36:38]  replicas=None
[2025-07-26 01:36:38]  scope=mc23_13p6TeV
[2025-07-26 01:36:38]  status=None
[2025-07-26 01:36:38]  status_code=0
[2025-07-26 01:36:38]  storage_token=
[2025-07-26 01:36:38]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745063445/log.45743349._028082.job.log.tgz.1
[2025-07-26 01:36:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5c/4f/log.45743349._028082.job.log.tgz.1
[2025-07-26 01:36:38]  workdir=None
[2025-07-26 01:36:38] ]
[2025-07-26 01:36:38] 2025-07-26 05:36:00,984 | INFO     | transferring file log.45743349._028082.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745063445/log.45743349._028082.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 01:36:38] 2025-07-26 05:36:00,984 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745063445/log.45743349._028082.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._028082.job
[2025-07-26 01:36:38] 2025-07-26 05:36:01,008 | INFO     | adding to output.list: log.45743349._028082.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5c/4f/log.45743349._028082.job.log.tg
[2025-07-26 01:36:38] 2025-07-26 05:36:01,009 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 01:36:38] 2025-07-26 05:36:01,009 | INFO     | summary of transferred files:
[2025-07-26 01:36:38] 2025-07-26 05:36:01,009 | INFO     |  -- lfn=log.45743349._028082.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 01:36:38] 2025-07-26 05:36:01,009 | INFO     | stage-out finished correctly
[2025-07-26 01:36:38] 2025-07-26 05:36:01,750 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 01:36:38] 2025-07-26 05:36:01,886 | INFO     | monitor loop #248: job 0:6745063445 is in state 'finished'
[2025-07-26 01:36:38] 2025-07-26 05:36:01,887 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:38] 2025-07-26 05:36:02,706 | INFO     | job 6745063445 has state=finished
[2025-07-26 01:36:38] 2025-07-26 05:36:02,706 | INFO     | preparing for final server update for job 6745063445 in state='finished'
[2025-07-26 01:36:38] 2025-07-26 05:36:02,706 | INFO     | this job has now completed (state=finished)
[2025-07-26 01:36:38] 2025-07-26 05:36:02,706 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 01:36:38] 2025-07-26 05:36:02,707 | INFO     | log transfer has been attempted: DONE
[2025-07-26 01:36:38] 2025-07-26 05:36:02,707 | INFO     | job 6745063445 has finished - writing final server update
[2025-07-26 01:36:38] 2025-07-26 05:36:02,707 | INFO     | total number of processed events: 400 (read)
[2025-07-26 01:36:38] 2025-07-26 05:36:02,707 | INFO     | executing command: lscpu
[2025-07-26 01:36:38] 2025-07-26 05:36:02,765 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 01:36:38] 2025-07-26 05:36:04,389 | INFO     | monitor loop #249: job 0:6745063445 is in state 'finished'
[2025-07-26 01:36:38] 2025-07-26 05:36:04,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:36:38] 2025-07-26 05:36:06,270 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 01:36:38] 2025-07-26 05:36:06,275 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3744.0920859375033
[2025-07-26 01:36:38] 2025-07-26 05:36:06,288 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745063445/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 01:36:38] 2025-07-26 05:36:06,289 | INFO     | extracted standard info from prmon json
[2025-07-26 01:36:38] 2025-07-26 05:36:06,289 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 01:36:38] 2025-07-26 05:36:06,289 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 01:36:38] 2025-07-26 05:36:06,289 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 01:36:38] 2025-07-26 05:36:06,289 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 01:36:38] 2025-07-26 05:36:06,290 | INFO     | fitting pss+swap vs Time
[2025-07-26 01:36:38] 2025-07-26 05:36:06,291 | INFO     | sum of square deviations: 34277852.0
[2025-07-26 01:36:38] 2025-07-26 05:36:06,291 | INFO     | sum of deviations: -344494053.50000006
[2025-07-26 01:36:38] 2025-07-26 05:36:06,291 | INFO     | mean x: 1753506557.5
[2025-07-26 01:36:38] 2025-07-26 05:36:06,291 | INFO     | mean y: 2527930.4791666665
[2025-07-26 01:36:38] 2025-07-26 05:36:06,291 | INFO     | -- intersect: 17625352774.696533
[2025-07-26 01:36:38] 2025-07-26 05:36:06,291 | INFO     | intersect: 17625352774.696533
[2025-07-26 01:36:38] 2025-07-26 05:36:06,291 | INFO     | chi2: 0.0005810578801945895
[2025-07-26 01:36:38] 2025-07-26 05:36:06,291 | INFO     | -- intersect: 17625352774.696533
[2025-07-26 01:36:38] 2025-07-26 05:36:06,291 | INFO     | current memory leak: -10.05 B/s (using 48 data points, chi2=0.00)
[2025-07-26 01:36:38] 2025-07-26 05:36:06,291 | INFO     | could have reported an average CPU frequency of 3748 MHz (5 samples)
[2025-07-26 01:36:38] 2025-07-26 05:36:06,292 | INFO     | ..............................
[2025-07-26 01:36:38] 2025-07-26 05:36:06,292 | INFO     | . Timing measurements:
[2025-07-26 01:36:38] 2025-07-26 05:36:06,292 | INFO     | . get job = 0 s
[2025-07-26 01:36:38] 2025-07-26 05:36:06,292 | INFO     | . initial setup = 2 s
[2025-07-26 01:36:38] 2025-07-26 05:36:06,292 | INFO     | . payload setup = 5 s
[2025-07-26 01:36:38] 2025-07-26 05:36:06,292 | INFO     | . stage-in = 0 s
[2025-07-26 01:36:38] 2025-07-26 05:36:06,292 | INFO     | . payload execution = 3342 s
[2025-07-26 01:36:38] 2025-07-26 05:36:06,292 | INFO     | . stage-out = 0 s
[2025-07-26 01:36:38] 2025-07-26 05:36:06,292 | INFO     | . log creation = 0 s
[2025-07-26 01:36:38] 2025-07-26 05:36:06,292 | INFO     | ..............................
[2025-07-26 01:36:38] 2025-07-26 05:36:06,355 | INFO     | 
[2025-07-26 01:36:38] 2025-07-26 05:36:06,355 | INFO     | job summary report
[2025-07-26 01:36:38] 2025-07-26 05:36:06,355 | INFO     | --------------------------------------------------
[2025-07-26 01:36:38] 2025-07-26 05:36:06,355 | INFO     | PanDA job id: 6745063445
[2025-07-26 01:36:38] 2025-07-26 05:36:06,355 | INFO     | task id: 45743349
[2025-07-26 01:36:38] 2025-07-26 05:36:06,355 | INFO     | errors: (none)
[2025-07-26 01:36:38] 2025-07-26 05:36:06,355 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | pilot state: finished 
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | transexitcode: 0
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | exeerrorcode: 0
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | exeerrordiag: 
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | exitcode: 0
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | exitmsg: OK
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | cpuconsumptiontime: 25173 s
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | nevents: 400
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | neventsw: 0
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | pid: 384986
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | pgrp: 384986
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | corecount: 8
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | event service: False
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | sizes: {0: 2397474, 4: 2397736, 11: 2397764, 3351: 2423439, 3352: 2432437, 3353: 2432493, 3357: 2432847}
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | --------------------------------------------------
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | 
[2025-07-26 01:36:38] 2025-07-26 05:36:06,356 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 01:36:38] 2025-07-26 05:36:06,373 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,373 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,373 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | job 6745063445 has completed (purged errors)
[2025-07-26 01:36:38] 2025-07-26 05:36:06,374 | INFO     | overall cleanup function is called
[2025-07-26 01:36:38] 2025-07-26 05:36:07,382 | INFO     | --- collectZombieJob: --- 10, [384986]
[2025-07-26 01:36:38] 2025-07-26 05:36:07,382 | INFO     | zombie collector waiting for pid 384986
[2025-07-26 01:36:38] 2025-07-26 05:36:07,382 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 01:36:38] 2025-07-26 05:36:07,382 | INFO     | collected zombie processes
[2025-07-26 01:36:38] 2025-07-26 05:36:07,382 | INFO     | will attempt to kill all subprocesses of pid=384986
[2025-07-26 01:36:38] 2025-07-26 05:36:07,729 | INFO     | process IDs to be killed: [384986] (in reverse order)
[2025-07-26 01:36:38] 2025-07-26 05:36:07,846 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 01:36:38] 2025-07-26 05:36:07,847 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 01:36:38] 2025-07-26 05:36:07,865 | INFO     | did not find any defunct processes belonging to 384986
[2025-07-26 01:36:38] 2025-07-26 05:36:07,879 | INFO     | did not find any defunct processes belonging to 384986
[2025-07-26 01:36:38] 2025-07-26 05:36:07,879 | INFO     | ready for new job
[2025-07-26 01:36:38] 2025-07-26 05:36:07,879 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 01:36:38] 2025-07-26 05:36:07,880 | INFO     | ***************************************
[2025-07-26 01:36:38] 2025-07-26 05:36:07,881 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 01:36:38] 2025-07-26 05:36:07,881 | INFO     | ***************************************
[2025-07-26 01:36:38] 2025-07-26 05:36:07,881 | INFO     | 
[2025-07-26 01:36:38] 2025-07-26 05:36:07,885 | INFO     | architecture information:
[2025-07-26 01:36:38] 2025-07-26 05:36:07,886 | INFO     | executing command: cat /etc/os-release
[2025-07-26 01:36:38] 2025-07-26 05:36:07,901 | INFO     | cat /etc/os-release:
[2025-07-26 01:36:38] NAME="CentOS Linux"
[2025-07-26 01:36:38] VERSION="7 (Core)"
[2025-07-26 01:36:38] ID="centos"
[2025-07-26 01:36:38] ID_LIKE="rhel fedora"
[2025-07-26 01:36:38] VERSION_ID="7"
[2025-07-26 01:36:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 01:36:38] ANSI_COLOR="0;31"
[2025-07-26 01:36:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 01:36:38] HOME_URL="https://www.centos.org/"
[2025-07-26 01:36:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 01:36:38] 
[2025-07-26 01:36:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 01:36:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 01:36:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 01:36:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 01:36:38] 
[2025-07-26 01:36:38] 2025-07-26 05:36:07,902 | INFO     | ***************************************
[2025-07-26 01:36:38] 2025-07-26 05:36:08,405 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 01:36:38] 2025-07-26 05:36:08,422 | INFO     | sufficient remaining disk space (166739312640 B)
[2025-07-26 01:36:38] 2025-07-26 05:36:08,423 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 01:36:38] 2025-07-26 05:36:08,423 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 01:36:38] 2025-07-26 05:36:08,423 | INFO     | update_server=False
[2025-07-26 01:36:38] 2025-07-26 05:36:08,423 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 01:36:38] 2025-07-26 05:36:08,423 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 01:36:38] 2025-07-26 05:36:08,423 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 01:36:38] 2025-07-26 05:36:08,424 | INFO     | aborting loop
[2025-07-26 01:36:38] 2025-07-26 05:36:08,731 | INFO     | all job control threads have been joined
[2025-07-26 01:36:38] 2025-07-26 05:36:08,940 | INFO     | all data control threads have been joined
[2025-07-26 01:36:38] 2025-07-26 05:36:09,080 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 01:36:38] 2025-07-26 05:36:09,132 | INFO     | all payload control threads have been joined
[2025-07-26 01:36:38] 2025-07-26 05:36:09,428 | INFO     | [job] retrieve thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:09,429 | INFO     | [job] job monitor thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:09,431 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:09,501 | INFO     | [payload] failed_post thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:09,736 | INFO     | [job] control thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:09,874 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:09,945 | INFO     | [data] control thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:10,106 | INFO     | [job] validate thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:10,136 | INFO     | [payload] control thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:10,189 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:10,355 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:10,502 | INFO     | [payload] validate_post thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:10,791 | INFO     | [data] copytool_in thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:11,086 | INFO     | [data] copytool_out thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:11,368 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 01:36:38] 2025-07-26 05:36:12,373 | INFO     | [job] queue monitor thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:12,431 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 01:36:38] 2025-07-26 05:36:13,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140305692428096)>', '<ExcThread(monitor, started 140305189803776)>']
[2025-07-26 01:36:38] 2025-07-26 05:36:18,304 | INFO     | all workflow threads have been joined
[2025-07-26 01:36:38] 2025-07-26 05:36:18,304 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 01:36:38] 2025-07-26 05:36:18,305 | INFO     | traces error code: 0
[2025-07-26 01:36:38] 2025-07-26 05:36:18,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 01:36:38] 2025-07-26 05:36:38,251 | INFO     | PID=376329 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 01:36:38] 2025-07-26 05:36:38,251 | INFO     | .. there are 16 such processes running
[2025-07-26 01:36:38] 2025-07-26 05:36:38,251 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 01:36:38] 2025-07-26 05:36:38,252 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 01:36:38] 2025-07-26 05:36:38,252 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 01:36:38] 2025-07-26 05:36:38,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 01:36:38] 2025-07-26 05:36:38,252 | INFO     | [monitor] control thread has ended
[2025-07-26 01:36:38] 2025-07-26 05:36:38,339 [wrapper] ==== pilot stdout END ====
[2025-07-26 01:36:38] 2025-07-26 05:36:38,342 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 01:36:38] 2025-07-26 05:36:38,344 [wrapper] pilotpid: 376329
[2025-07-26 01:36:38] 2025-07-26 05:36:38,347 [wrapper] Pilot exit status: 0
[2025-07-26 01:36:38] 2025-07-26 05:36:38,356 [wrapper] pandaids: 6745063445
[2025-07-26 01:36:38] 2025-07-26 05:36:38,441 [wrapper] cleanup supervisor_pilot  663386 376330
[2025-07-26 01:36:38] 2025-07-26 05:36:38,444 [wrapper] Test setup, not cleaning
[2025-07-26 01:36:38] 2025-07-26 05:36:38,446 [wrapper] apfmon messages muted
[2025-07-26 01:36:38] 2025-07-26 05:36:38,448 [wrapper] ==== wrapper stdout END ====
[2025-07-26 01:36:38] 2025-07-26 05:36:38,450 [wrapper] ==== wrapper stderr END ====
[2025-07-26 01:36:38]  *** Error codes and diagnostics ***
[2025-07-26 01:36:38]     "exeErrorCode": 0,
[2025-07-26 01:36:38]     "exeErrorDiag": "",
[2025-07-26 01:36:38]     "pilotErrorCode": 0,
[2025-07-26 01:36:38]     "pilotErrorDiag": "",
[2025-07-26 01:36:38]  *** Listing of results directory ***
[2025-07-26 01:36:38] total 357380
[2025-07-26 01:36:38] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 18:10 pilot3.tar.gz
[2025-07-26 01:36:38] -rwx------. 1 boincer umatlas     36292 Jul 25 18:22 runpilot2-wrapper.sh
[2025-07-26 01:36:38] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 18:22 queuedata.json
[2025-07-26 01:36:38] -rw-r--r--. 1 boincer umatlas       100 Jul 26 00:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 01:36:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 00:39 run_atlas
[2025-07-26 01:36:38] -rw-r--r--. 1 boincer umatlas       105 Jul 26 00:39 job.xml
[2025-07-26 01:36:38] -rw-r--r--. 2 boincer umatlas 147224833 Jul 26 00:39 EVNT.45743347._001564.pool.root.1
[2025-07-26 01:36:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 00:39 start_atlas.sh
[2025-07-26 01:36:38] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 00:39 shared
[2025-07-26 01:36:38] -rw-r--r--. 2 boincer umatlas    542886 Jul 26 00:39 input.tar.gz
[2025-07-26 01:36:38] -rw-r--r--. 1 boincer umatlas         0 Jul 26 00:39 boinc_lockfile
[2025-07-26 01:36:38] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 00:39 pandaJob.out
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas    980001 Jul 26 00:39 agis_schedconf.cvmfs.json
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas   1593052 Jul 26 00:39 agis_ddmendpoints.agis.ALL.json
[2025-07-26 01:36:38] drwx------. 4 boincer umatlas      4096 Jul 26 00:39 pilot3
[2025-07-26 01:36:38] -rw-r--r--. 1 boincer umatlas      7174 Jul 26 01:29 init_data.xml
[2025-07-26 01:36:38] -rw-r--r--. 1 boincer umatlas       529 Jul 26 01:35 boinc_task_state.xml
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas 213586446 Jul 26 01:35 HITS.45743349._028082.pool.root.1
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas      1028 Jul 26 01:35 memory_monitor_summary.json
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas    289999 Jul 26 01:36 log.45743349._028082.job.log.tgz.1
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas      7770 Jul 26 01:36 heartbeat.json
[2025-07-26 01:36:38] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 01:36 boinc_mmap_file
[2025-07-26 01:36:38] -rw-r--r--. 1 boincer umatlas        27 Jul 26 01:36 wrapper_checkpoint.txt
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas       822 Jul 26 01:36 pilotlog.txt
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas        95 Jul 26 01:36 pilot_heartbeat.json
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas    345839 Jul 26 01:36 log.45743349._028082.job.log.1
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas       357 Jul 26 01:36 output.list
[2025-07-26 01:36:38] -rw-r--r--. 1 boincer umatlas       620 Jul 26 01:36 runtime_log
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas    655360 Jul 26 01:36 result.tar.gz
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas       651 Jul 26 01:36 U3FODmPzfz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmNhzKDmL11Icn.diag
[2025-07-26 01:36:38] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 01:36 runtime_log.err
[2025-07-26 01:36:38] -rw-r--r--. 1 boincer umatlas     21452 Jul 26 01:36 stderr.txt
[2025-07-26 01:36:38] HITS file was successfully produced:
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas 213586446 Jul 26 01:35 shared/HITS.pool.root.1
[2025-07-26 01:36:38]  *** Contents of shared directory: ***
[2025-07-26 01:36:38] total 353552
[2025-07-26 01:36:38] -rw-r--r--. 2 boincer umatlas 147224833 Jul 26 00:39 ATLAS.root_0
[2025-07-26 01:36:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 00:39 start_atlas.sh
[2025-07-26 01:36:38] -rw-r--r--. 2 boincer umatlas    542886 Jul 26 00:39 input.tar.gz
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas 213586446 Jul 26 01:35 HITS.pool.root.1
[2025-07-26 01:36:38] -rw-------. 1 boincer umatlas    655360 Jul 26 01:36 result.tar.gz
01:36:40 (372726): run_atlas exited; CPU time 25247.301818
01:36:40 (372726): called boinc_finish(0)

</stderr_txt>
]]>

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