Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:54:03 (23459): wrapper (7.7.26015): starting
23:54:03 (23459): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 23:54:03] Arguments: --nthreads 8
[2025-07-25 23:54:03] Threads: 8
[2025-07-25 23:54:03] Checking for CVMFS
[2025-07-25 23:54:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 23:54:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 23:54:03] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 23:54:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 23:54:04] 2.11.2.0 1598 103369 118736 148763 3 57 19696620 20275200 917 130560 0 70409888 99.985 8121887 9224 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 23:54:04] CVMFS is ok
[2025-07-25 23:54:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 23:54:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 23:54:04] Further information can be found at the LHC@home message board.
[2025-07-25 23:54:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 23:54:04] Checking for apptainer binary...
[2025-07-25 23:54:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 23:54:04] Running /usr/bin/apptainer --version
[2025-07-25 23:54:04] apptainer version 1.3.2-1.el7
[2025-07-25 23:54:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 23:54:04] c-205-36.aglt2.org
[2025-07-25 23:54:04] apptainer works
[2025-07-25 23:54:04] Set ATHENA_PROC_NUMBER=8
[2025-07-25 23:54:04] Set ATHENA_CORE_NUMBER=8
[2025-07-25 23:54:04] Starting ATLAS job with PandaID=6745062885
[2025-07-25 23:54:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 01:09:46]  *** The last 200 lines of the pilot log: ***
[2025-07-26 01:09:46]  scope=mc23_13p6TeV
[2025-07-26 01:09:46]  status=None
[2025-07-26 01:09:46]  status_code=0
[2025-07-26 01:09:46]  storage_token=
[2025-07-26 01:09:46]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6745062885/log.45743349._027651.job.log.tgz.1
[2025-07-26 01:09:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/4f/log.45743349._027651.job.log.tgz.1
[2025-07-26 01:09:46]  workdir=None
[2025-07-26 01:09:46] ]
[2025-07-26 01:09:46] 2025-07-26 05:09:04,352 | INFO     | transferring file log.45743349._027651.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6745062885/log.45743349._027651.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 01:09:46] 2025-07-26 05:09:04,352 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6745062885/log.45743349._027651.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._027651.job
[2025-07-26 01:09:46] 2025-07-26 05:09:04,392 | INFO     | adding to output.list: log.45743349._027651.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/4f/log.45743349._027651.job.log.tg
[2025-07-26 01:09:46] 2025-07-26 05:09:04,393 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 01:09:46] 2025-07-26 05:09:04,393 | INFO     | summary of transferred files:
[2025-07-26 01:09:46] 2025-07-26 05:09:04,393 | INFO     |  -- lfn=log.45743349._027651.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 01:09:46] 2025-07-26 05:09:04,393 | INFO     | stage-out finished correctly
[2025-07-26 01:09:46] 2025-07-26 05:09:04,583 | INFO     | monitor loop #339: job 0:6745062885 is in state 'finished'
[2025-07-26 01:09:46] 2025-07-26 05:09:04,584 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:09:46] 2025-07-26 05:09:07,085 | INFO     | monitor loop #340: job 0:6745062885 is in state 'finished'
[2025-07-26 01:09:46] 2025-07-26 05:09:07,086 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:09:46] 2025-07-26 05:09:07,264 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 01:09:46] 2025-07-26 05:09:08,536 | INFO     | job 6745062885 has state=finished
[2025-07-26 01:09:46] 2025-07-26 05:09:08,537 | INFO     | preparing for final server update for job 6745062885 in state='finished'
[2025-07-26 01:09:46] 2025-07-26 05:09:08,537 | INFO     | this job has now completed (state=finished)
[2025-07-26 01:09:46] 2025-07-26 05:09:08,538 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 01:09:46] 2025-07-26 05:09:08,538 | INFO     | log transfer has been attempted: DONE
[2025-07-26 01:09:46] 2025-07-26 05:09:08,538 | INFO     | job 6745062885 has finished - writing final server update
[2025-07-26 01:09:46] 2025-07-26 05:09:08,538 | INFO     | total number of processed events: 400 (read)
[2025-07-26 01:09:46] 2025-07-26 05:09:08,539 | INFO     | executing command: lscpu
[2025-07-26 01:09:46] 2025-07-26 05:09:08,574 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 01:09:46] 2025-07-26 05:09:09,588 | INFO     | monitor loop #341: job 0:6745062885 is in state 'finished'
[2025-07-26 01:09:46] 2025-07-26 05:09:09,589 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:09:46] 2025-07-26 05:09:12,091 | INFO     | monitor loop #342: job 0:6745062885 is in state 'finished'
[2025-07-26 01:09:46] 2025-07-26 05:09:12,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 01:09:46] 2025-07-26 05:09:12,861 | INFO     | 4499s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-26 01:09:46] 2025-07-26 05:09:13,117 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 01:09:46] 2025-07-26 05:09:13,121 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2058.8924374999997
[2025-07-26 01:09:46] 2025-07-26 05:09:13,125 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745062885/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 01:09:46] 2025-07-26 05:09:13,126 | INFO     | extracted standard info from prmon json
[2025-07-26 01:09:46] 2025-07-26 05:09:13,126 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 01:09:46] 2025-07-26 05:09:13,126 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 01:09:46] 2025-07-26 05:09:13,126 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 01:09:46] 2025-07-26 05:09:13,127 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 01:09:46] 2025-07-26 05:09:13,129 | INFO     | fitting pss+swap vs Time
[2025-07-26 01:09:46] 2025-07-26 05:09:13,129 | INFO     | sum of square deviations: 93240818.0
[2025-07-26 01:09:46] 2025-07-26 05:09:13,129 | INFO     | sum of deviations: -8097577980.000001
[2025-07-26 01:09:46] 2025-07-26 05:09:13,129 | INFO     | mean x: 1753504399.0
[2025-07-26 01:09:46] 2025-07-26 05:09:13,130 | INFO     | mean y: 2605922.686567164
[2025-07-26 01:09:46] 2025-07-26 05:09:13,130 | INFO     | -- intersect: 152287183790.45618
[2025-07-26 01:09:46] 2025-07-26 05:09:13,130 | INFO     | intersect: 152287183790.45618
[2025-07-26 01:09:46] 2025-07-26 05:09:13,130 | INFO     | chi2: 0.06422753212149433
[2025-07-26 01:09:46] 2025-07-26 05:09:13,130 | INFO     | -- intersect: 152287183790.45618
[2025-07-26 01:09:46] 2025-07-26 05:09:13,130 | INFO     | current memory leak: -86.85 B/s (using 67 data points, chi2=0.06)
[2025-07-26 01:09:46] 2025-07-26 05:09:13,131 | INFO     | could have reported an average CPU frequency of 2201 MHz (6 samples)
[2025-07-26 01:09:46] 2025-07-26 05:09:13,131 | INFO     | ..............................
[2025-07-26 01:09:46] 2025-07-26 05:09:13,131 | INFO     | . Timing measurements:
[2025-07-26 01:09:46] 2025-07-26 05:09:13,131 | INFO     | . get job = 0 s
[2025-07-26 01:09:46] 2025-07-26 05:09:13,131 | INFO     | . initial setup = 2 s
[2025-07-26 01:09:46] 2025-07-26 05:09:13,131 | INFO     | . payload setup = 7 s
[2025-07-26 01:09:46] 2025-07-26 05:09:13,131 | INFO     | . stage-in = 0 s
[2025-07-26 01:09:46] 2025-07-26 05:09:13,131 | INFO     | . payload execution = 4460 s
[2025-07-26 01:09:46] 2025-07-26 05:09:13,132 | INFO     | . stage-out = 0 s
[2025-07-26 01:09:46] 2025-07-26 05:09:13,132 | INFO     | . log creation = 0 s
[2025-07-26 01:09:46] 2025-07-26 05:09:13,132 | INFO     | ..............................
[2025-07-26 01:09:46] 2025-07-26 05:09:13,228 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-07-26 01:09:46] 2025-07-26 05:09:13,552 | INFO     | 
[2025-07-26 01:09:46] 2025-07-26 05:09:13,552 | INFO     | job summary report
[2025-07-26 01:09:46] 2025-07-26 05:09:13,552 | INFO     | --------------------------------------------------
[2025-07-26 01:09:46] 2025-07-26 05:09:13,552 | INFO     | PanDA job id: 6745062885
[2025-07-26 01:09:46] 2025-07-26 05:09:13,553 | INFO     | task id: 45743349
[2025-07-26 01:09:46] 2025-07-26 05:09:13,553 | INFO     | errors: (none)
[2025-07-26 01:09:46] 2025-07-26 05:09:13,553 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 01:09:46] 2025-07-26 05:09:13,553 | INFO     | pilot state: finished 
[2025-07-26 01:09:46] 2025-07-26 05:09:13,553 | INFO     | transexitcode: 0
[2025-07-26 01:09:46] 2025-07-26 05:09:13,553 | INFO     | exeerrorcode: 0
[2025-07-26 01:09:46] 2025-07-26 05:09:13,553 | INFO     | exeerrordiag: 
[2025-07-26 01:09:46] 2025-07-26 05:09:13,553 | INFO     | exitcode: 0
[2025-07-26 01:09:46] 2025-07-26 05:09:13,553 | INFO     | exitmsg: OK
[2025-07-26 01:09:46] 2025-07-26 05:09:13,553 | INFO     | cpuconsumptiontime: 33080 s
[2025-07-26 01:09:46] 2025-07-26 05:09:13,554 | INFO     | nevents: 400
[2025-07-26 01:09:46] 2025-07-26 05:09:13,554 | INFO     | neventsw: 0
[2025-07-26 01:09:46] 2025-07-26 05:09:13,554 | INFO     | pid: 1043
[2025-07-26 01:09:46] 2025-07-26 05:09:13,554 | INFO     | pgrp: 1043
[2025-07-26 01:09:46] 2025-07-26 05:09:13,554 | INFO     | corecount: 8
[2025-07-26 01:09:46] 2025-07-26 05:09:13,554 | INFO     | event service: False
[2025-07-26 01:09:46] 2025-07-26 05:09:13,554 | INFO     | sizes: {0: 2396647, 1: 2397503, 5: 2397765, 12: 2397821, 4471: 2424036, 4472: 2424035, 4473: 2433217, 4476: 2433273, 4482: 2433467}
[2025-07-26 01:09:46] 2025-07-26 05:09:13,554 | INFO     | --------------------------------------------------
[2025-07-26 01:09:46] 2025-07-26 05:09:13,554 | INFO     | 
[2025-07-26 01:09:46] 2025-07-26 05:09:13,555 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-26 01:09:46] 2025-07-26 05:09:13,576 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,576 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,577 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,577 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,577 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,577 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,577 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,577 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,577 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,578 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,578 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,578 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,578 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,578 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 01:09:46] 2025-07-26 05:09:13,579 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,579 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 01:09:46] 2025-07-26 05:09:13,579 | INFO     | job 6745062885 has completed (purged errors)
[2025-07-26 01:09:46] 2025-07-26 05:09:13,579 | INFO     | overall cleanup function is called
[2025-07-26 01:09:46] 2025-07-26 05:09:14,012 | INFO     | PID=27065 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 01:09:46] 2025-07-26 05:09:14,012 | INFO     | .. there are 2 such processes running
[2025-07-26 01:09:46] 2025-07-26 05:09:14,587 | INFO     | --- collectZombieJob: --- 10, [1043]
[2025-07-26 01:09:46] 2025-07-26 05:09:14,587 | INFO     | zombie collector waiting for pid 1043
[2025-07-26 01:09:46] 2025-07-26 05:09:14,588 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 01:09:46] 2025-07-26 05:09:14,588 | INFO     | collected zombie processes
[2025-07-26 01:09:46] 2025-07-26 05:09:14,588 | INFO     | will attempt to kill all subprocesses of pid=1043
[2025-07-26 01:09:46] 2025-07-26 05:09:14,707 | INFO     | process IDs to be killed: [1043] (in reverse order)
[2025-07-26 01:09:46] 2025-07-26 05:09:14,752 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 01:09:46] 2025-07-26 05:09:14,752 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 01:09:46] 2025-07-26 05:09:14,756 | INFO     | did not find any defunct processes belonging to 1043
[2025-07-26 01:09:46] 2025-07-26 05:09:14,759 | INFO     | did not find any defunct processes belonging to 1043
[2025-07-26 01:09:46] 2025-07-26 05:09:14,759 | INFO     | ready for new job
[2025-07-26 01:09:46] 2025-07-26 05:09:14,760 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 01:09:46] 2025-07-26 05:09:14,761 | INFO     | ***************************************
[2025-07-26 01:09:46] 2025-07-26 05:09:14,761 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 01:09:46] 2025-07-26 05:09:14,762 | INFO     | ***************************************
[2025-07-26 01:09:46] 2025-07-26 05:09:14,762 | INFO     | 
[2025-07-26 01:09:46] 2025-07-26 05:09:14,763 | INFO     | architecture information:
[2025-07-26 01:09:46] 2025-07-26 05:09:14,763 | INFO     | executing command: cat /etc/os-release
[2025-07-26 01:09:46] 2025-07-26 05:09:14,776 | INFO     | cat /etc/os-release:
[2025-07-26 01:09:46] NAME="CentOS Linux"
[2025-07-26 01:09:46] VERSION="7 (Core)"
[2025-07-26 01:09:46] ID="centos"
[2025-07-26 01:09:46] ID_LIKE="rhel fedora"
[2025-07-26 01:09:46] VERSION_ID="7"
[2025-07-26 01:09:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 01:09:46] ANSI_COLOR="0;31"
[2025-07-26 01:09:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 01:09:46] HOME_URL="https://www.centos.org/"
[2025-07-26 01:09:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 01:09:46] 
[2025-07-26 01:09:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 01:09:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 01:09:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 01:09:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 01:09:46] 
[2025-07-26 01:09:46] 2025-07-26 05:09:14,777 | INFO     | ***************************************
[2025-07-26 01:09:46] 2025-07-26 05:09:15,279 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-26 01:09:46] 2025-07-26 05:09:15,295 | INFO     | sufficient remaining disk space (32655802368 B)
[2025-07-26 01:09:46] 2025-07-26 05:09:15,296 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 01:09:46] 2025-07-26 05:09:15,296 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 01:09:46] 2025-07-26 05:09:15,296 | INFO     | update_server=False
[2025-07-26 01:09:46] 2025-07-26 05:09:15,296 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 01:09:46] 2025-07-26 05:09:15,297 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 01:09:46] 2025-07-26 05:09:15,599 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 01:09:46] 2025-07-26 05:09:15,600 | INFO     | aborting loop
[2025-07-26 01:09:46] 2025-07-26 05:09:15,925 | INFO     | all data control threads have been joined
[2025-07-26 01:09:46] 2025-07-26 05:09:15,928 | INFO     | all job control threads have been joined
[2025-07-26 01:09:46] 2025-07-26 05:09:16,297 | INFO     | [job] retrieve thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:16,411 | INFO     | all payload control threads have been joined
[2025-07-26 01:09:46] 2025-07-26 05:09:16,605 | INFO     | [job] job monitor thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:16,724 | INFO     | [payload] validate_post thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:16,930 | INFO     | [data] control thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:16,933 | INFO     | [job] control thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:16,945 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:17,302 | INFO     | [data] copytool_out thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:17,415 | INFO     | [payload] control thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:17,482 | INFO     | [job] validate thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:17,741 | INFO     | [payload] failed_post thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:17,761 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:17,767 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:17,771 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:17,779 | INFO     | [data] copytool_in thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:17,854 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 01:09:46] 2025-07-26 05:09:18,222 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 01:09:46] 2025-07-26 05:09:19,228 | INFO     | [job] queue monitor thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:21,857 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 01:09:46] 2025-07-26 05:09:23,584 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139930808186688)>', '<ExcThread(monitor, started 139930101610240)>']
[2025-07-26 01:09:46] 2025-07-26 05:09:28,593 | INFO     | all workflow threads have been joined
[2025-07-26 01:09:46] 2025-07-26 05:09:28,594 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 01:09:46] 2025-07-26 05:09:28,594 | INFO     | traces error code: 0
[2025-07-26 01:09:46] 2025-07-26 05:09:28,594 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 01:09:46] 2025-07-26 05:09:46,234 | INFO     | PID=27065 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 01:09:46] 2025-07-26 05:09:46,234 | INFO     | .. there are 2 such processes running
[2025-07-26 01:09:46] 2025-07-26 05:09:46,235 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 01:09:46] 2025-07-26 05:09:46,235 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 01:09:46] 2025-07-26 05:09:46,235 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 01:09:46] 2025-07-26 05:09:46,235 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 01:09:46] 2025-07-26 05:09:46,235 | INFO     | [monitor] control thread has ended
[2025-07-26 01:09:46] 2025-07-26 05:09:46,338 [wrapper] ==== pilot stdout END ====
[2025-07-26 01:09:46] 2025-07-26 05:09:46,342 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 01:09:46] 2025-07-26 05:09:46,346 [wrapper] pilotpid: 27065
[2025-07-26 01:09:46] 2025-07-26 05:09:46,349 [wrapper] Pilot exit status: 0
[2025-07-26 01:09:46] 2025-07-26 05:09:46,360 [wrapper] pandaids: 6745062885
[2025-07-26 01:09:46] 2025-07-26 05:09:46,400 [wrapper] cleanup supervisor_pilot 19902 27066
[2025-07-26 01:09:46] 2025-07-26 05:09:46,404 [wrapper] Test setup, not cleaning
[2025-07-26 01:09:46] 2025-07-26 05:09:46,407 [wrapper] apfmon messages muted
[2025-07-26 01:09:46] 2025-07-26 05:09:46,410 [wrapper] ==== wrapper stdout END ====
[2025-07-26 01:09:46] 2025-07-26 05:09:46,413 [wrapper] ==== wrapper stderr END ====
[2025-07-26 01:09:46]  *** Error codes and diagnostics ***
[2025-07-26 01:09:46]     "exeErrorCode": 0,
[2025-07-26 01:09:46]     "exeErrorDiag": "",
[2025-07-26 01:09:46]     "pilotErrorCode": 0,
[2025-07-26 01:09:46]     "pilotErrorDiag": "",
[2025-07-26 01:09:46]  *** Listing of results directory ***
[2025-07-26 01:09:46] total 349808
[2025-07-26 01:09:46] -rw-r--r-- 1 boincer umatlas    530466 Jul 25 17:12 pilot3.tar.gz
[2025-07-26 01:09:46] -rw-r--r-- 1 boincer umatlas      5112 Jul 25 17:40 queuedata.json
[2025-07-26 01:09:46] -rwx------ 1 boincer umatlas     36292 Jul 25 17:41 runpilot2-wrapper.sh
[2025-07-26 01:09:46] -rw-r--r-- 1 boincer umatlas       100 Jul 25 23:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 01:09:46] -rwxr-xr-x 1 boincer umatlas      7986 Jul 25 23:54 run_atlas
[2025-07-26 01:09:46] -rw-r--r-- 1 boincer umatlas       105 Jul 25 23:54 job.xml
[2025-07-26 01:09:46] -rw-r--r-- 2 boincer umatlas 143880665 Jul 25 23:54 EVNT.45743347._001536.pool.root.1
[2025-07-26 01:09:46] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 23:54 start_atlas.sh
[2025-07-26 01:09:46] drwxrwx--x 2 boincer umatlas      4096 Jul 25 23:54 shared
[2025-07-26 01:09:46] -rw-r--r-- 2 boincer umatlas    542896 Jul 25 23:54 input.tar.gz
[2025-07-26 01:09:46] -rw-r--r-- 1 boincer umatlas         0 Jul 25 23:54 boinc_lockfile
[2025-07-26 01:09:46] -rw-r--r-- 1 boincer umatlas      2563 Jul 25 23:54 pandaJob.out
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas    980001 Jul 25 23:54 agis_schedconf.cvmfs.json
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas   1593052 Jul 25 23:54 agis_ddmendpoints.agis.ALL.json
[2025-07-26 01:09:46] drwx------ 4 boincer umatlas      4096 Jul 25 23:54 pilot3
[2025-07-26 01:09:46] -rw-r--r-- 1 boincer umatlas      6048 Jul 26 01:01 init_data.xml
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas 208949997 Jul 26 01:08 HITS.45743349._027651.pool.root.1
[2025-07-26 01:09:46] -rw-r--r-- 1 boincer umatlas       529 Jul 26 01:08 boinc_task_state.xml
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas      1047 Jul 26 01:08 memory_monitor_summary.json
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas    298260 Jul 26 01:09 log.45743349._027651.job.log.tgz.1
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas        95 Jul 26 01:09 pilot_heartbeat.json
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas      7837 Jul 26 01:09 heartbeat.json
[2025-07-26 01:09:46] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 01:09 boinc_mmap_file
[2025-07-26 01:09:46] -rw-r--r-- 1 boincer umatlas        27 Jul 26 01:09 wrapper_checkpoint.txt
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas       820 Jul 26 01:09 pilotlog.txt
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas    449094 Jul 26 01:09 log.45743349._027651.job.log.1
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas       357 Jul 26 01:09 output.list
[2025-07-26 01:09:46] -rw-r--r-- 1 boincer umatlas       620 Jul 26 01:09 runtime_log
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas    768000 Jul 26 01:09 result.tar.gz
[2025-07-26 01:09:46] -rw-r--r-- 1 boincer umatlas      8660 Jul 26 01:09 runtime_log.err
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas       658 Jul 26 01:09 OGPKDmTLfz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUWQLDmcuOAun.diag
[2025-07-26 01:09:46] -rw-r--r-- 1 boincer umatlas     22040 Jul 26 01:09 stderr.txt
[2025-07-26 01:09:46] HITS file was successfully produced:
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas 208949997 Jul 26 01:08 shared/HITS.pool.root.1
[2025-07-26 01:09:46]  *** Contents of shared directory: ***
[2025-07-26 01:09:46] total 345872
[2025-07-26 01:09:46] -rw-r--r-- 2 boincer umatlas 143880665 Jul 25 23:54 ATLAS.root_0
[2025-07-26 01:09:46] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 23:54 start_atlas.sh
[2025-07-26 01:09:46] -rw-r--r-- 2 boincer umatlas    542896 Jul 25 23:54 input.tar.gz
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas 208949997 Jul 26 01:08 HITS.pool.root.1
[2025-07-26 01:09:46] -rw------- 1 boincer umatlas    768000 Jul 26 01:09 result.tar.gz
01:09:48 (23459): run_atlas exited; CPU time 33082.231295
01:09:48 (23459): called boinc_finish(0)

</stderr_txt>
]]>

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