Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-26 03:44:44 (1870496): Detected: vboxwrapper 26206
2025-07-26 03:44:44 (1870496): Detected: BOINC client v8.2.4
2025-07-26 03:44:45 (1870496): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-07-26 03:44:45 (1870496): Successfully copied 'init_data.xml' to the shared directory.
2025-07-26 03:44:45 (1870496): Create VM. (boinc_bfb8e4d8faa4d6c8, slot#1)
2025-07-26 03:44:45 (1870496): Setting Memory Size for VM. (4100MB)
2025-07-26 03:44:46 (1870496): Setting CPU Count for VM. (1)
2025-07-26 03:44:46 (1870496): Setting Chipset Options for VM.
2025-07-26 03:44:46 (1870496): Setting Graphics Controller Options for VM.
2025-07-26 03:44:46 (1870496): Setting Boot Options for VM.
2025-07-26 03:44:46 (1870496): Setting Network Configuration for NAT.
2025-07-26 03:44:46 (1870496): Enabling VM Network Access.
2025-07-26 03:44:46 (1870496): Disabling USB Support for VM.
2025-07-26 03:44:47 (1870496): Disabling COM Port Support for VM.
2025-07-26 03:44:47 (1870496): Disabling LPT Port Support for VM.
2025-07-26 03:44:47 (1870496): Disabling Audio Support for VM.
2025-07-26 03:44:47 (1870496): Disabling Clipboard Support for VM.
2025-07-26 03:44:47 (1870496): Disabling Drag and Drop Support for VM.
2025-07-26 03:44:47 (1870496): Adding storage controller(s) to VM.
2025-07-26 03:44:47 (1870496): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-26 03:44:48 (1870496): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-26 03:44:49 (1870496): forwarding host port 37887 to guest port 80
2025-07-26 03:44:49 (1870496): Enabling remote desktop for VM.
2025-07-26 03:44:49 (1870496): Enabling shared directory for VM.
2025-07-26 03:44:49 (1870496): Starting VM using VBoxManage interface. (boinc_bfb8e4d8faa4d6c8, slot#1)
2025-07-26 03:44:51 (1870496): Successfully started VM. (PID = '1870946')
2025-07-26 03:44:51 (1870496): Reporting VM Process ID to BOINC.
2025-07-26 03:44:51 (1870496): Guest Log: BIOS: VirtualBox 6.1.50
2025-07-26 03:44:51 (1870496): Guest Log: CPUID EDX: 0x178bfbff
2025-07-26 03:44:51 (1870496): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-26 03:44:51 (1870496): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-26 03:44:51 (1870496): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-26 03:44:51 (1870496): Detected: Web Application Enabled (http://localhost:37887)
2025-07-26 03:44:51 (1870496): Detected: Remote Desktop Enabled (localhost:43493)
2025-07-26 03:44:51 (1870496): Preference change detected
2025-07-26 03:44:51 (1870496): Setting CPU throttle for VM. (100%)
2025-07-26 03:44:51 (1870496): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 03:44:53 (1870496): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-26 03:44:53 (1870496): Guest Log: BIOS: Booting from Hard Disk...
2025-07-26 03:44:56 (1870496): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-26 03:44:56 (1870496): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-26 03:44:56 (1870496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-26 03:45:07 (1870496): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-26 03:45:07 (1870496): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-26 03:45:39 (1870496): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-26 03:45:39 (1870496): Guest Log: 00:00:00.000768 main     Log opened 2025-07-26T03:45:37.852583000Z
2025-07-26 03:45:39 (1870496): Guest Log: 00:00:00.001294 main     OS Product: Linux
2025-07-26 03:45:39 (1870496): Guest Log: 00:00:00.001425 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-26 03:45:39 (1870496): Guest Log: 00:00:00.001532 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-26 03:45:39 (1870496): Guest Log: 00:00:00.001650 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-26 03:45:39 (1870496): Guest Log: 00:00:00.001653 main     Process ID: 1240
2025-07-26 03:45:39 (1870496): Guest Log: 00:00:00.001654 main     Package type: LINUX_64BITS_GENERIC
2025-07-26 03:45:39 (1870496): Guest Log: 00:00:00.006389 main     5.2.32 r132073 started. Verbose level = 0
2025-07-26 03:45:41 (1870496): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-26 03:45:41 (1870496): Guest Log: [INFO] Mounting shared directory
2025-07-26 03:45:41 (1870496): Guest Log: [INFO] Checking for init_data.xml
2025-07-26 03:46:15 (1870496): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-26 03:46:15 (1870496): Guest Log: [INFO] Detected branch: prod
2025-07-26 03:46:18 (1870496): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-26 03:46:18 (1870496): Guest Log: Copying input files
2025-07-26 03:46:20 (1870496): Guest Log: Copied input files into RunAtlas.
2025-07-26 03:46:20 (1870496): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-26 03:46:20 (1870496): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-26 03:46:20 (1870496): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-26 03:46:20 (1870496): Guest Log: Further information can be found at the LHC@home message board.
2025-07-26 03:46:57 (1870496): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-26 03:47:01 (1870496): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-26 03:47:01 (1870496): Guest Log: 2.6.3.0 1533 0 32108 148763 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-26 03:47:07 (1870496): Guest Log: copied the webapp to /var/www
2025-07-26 03:47:07 (1870496): Guest Log: core_number=1
2025-07-26 03:47:10 (1870496): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-26 03:47:10 (1870496): Guest Log:  *** Starting ATLAS job. (PandaID=6745061829 taskID=45743349) ***
2025-07-26 05:23:52 (1870496): Status Report: Elapsed Time: '6000.000000'
2025-07-26 05:23:52 (1870496): Status Report: CPU Time: '5629.620000'
2025-07-26 07:02:52 (1870496): Status Report: Elapsed Time: '12000.000000'
2025-07-26 07:02:52 (1870496): Status Report: CPU Time: '11573.730000'
2025-07-26 07:17:44 (1870496): Preference change detected
2025-07-26 07:17:44 (1870496): Setting CPU throttle for VM. (100%)
2025-07-26 07:17:45 (1870496): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 08:41:53 (1870496): Status Report: Elapsed Time: '18000.000000'
2025-07-26 08:41:53 (1870496): Status Report: CPU Time: '17517.540000'
2025-07-26 10:20:53 (1870496): Status Report: Elapsed Time: '24000.000000'
2025-07-26 10:20:53 (1870496): Status Report: CPU Time: '23461.680000'
2025-07-26 11:59:54 (1870496): Status Report: Elapsed Time: '30000.000000'
2025-07-26 11:59:54 (1870496): Status Report: CPU Time: '29405.740000'
2025-07-26 13:38:55 (1870496): Status Report: Elapsed Time: '36000.000000'
2025-07-26 13:38:55 (1870496): Status Report: CPU Time: '35349.680000'
2025-07-26 15:17:55 (1870496): Status Report: Elapsed Time: '42000.000000'
2025-07-26 15:17:55 (1870496): Status Report: CPU Time: '41293.720000'
2025-07-26 16:56:56 (1870496): Status Report: Elapsed Time: '48000.000000'
2025-07-26 16:56:56 (1870496): Status Report: CPU Time: '47237.150000'
2025-07-26 18:35:56 (1870496): Status Report: Elapsed Time: '54000.000000'
2025-07-26 18:35:56 (1870496): Status Report: CPU Time: '53180.540000'
2025-07-26 19:17:48 (1870496): Preference change detected
2025-07-26 19:17:48 (1870496): Setting CPU throttle for VM. (100%)
2025-07-26 19:17:49 (1870496): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 20:14:57 (1870496): Status Report: Elapsed Time: '60000.140731'
2025-07-26 20:14:57 (1870496): Status Report: CPU Time: '59124.450000'
2025-07-26 21:53:58 (1870496): Status Report: Elapsed Time: '66000.140731'
2025-07-26 21:53:58 (1870496): Status Report: CPU Time: '65068.590000'
2025-07-26 23:32:58 (1870496): Status Report: Elapsed Time: '72000.140731'
2025-07-26 23:32:58 (1870496): Status Report: CPU Time: '71012.750000'
2025-07-26 23:37:40 (1870496): Guest Log:  *** Job finished ***
2025-07-26 23:37:40 (1870496): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:28,705 | INFO     | [job] control thread has finished
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:28,872 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:32,877 | INFO     | [data] queue_monitor thread has finished
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:34,214 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140087490934592)>', '<ExcThread(monitor, started 140087044065024)>']
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:35,196 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:35,196 | INFO     | [monitor] control thread has ended
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,221 | INFO     | all workflow threads have been joined
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,222 | INFO     | end of generic workflow (traces error code: 0)
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,223 | INFO     | traces error code: 0
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,528 [wrapper] ==== pilot stdout END ====
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,543 [wrapper] ==== wrapper stdout RESUME ====
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,556 [wrapper] pilotpid: 5826
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,566 [wrapper] Pilot exit status: 0
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,838 [wrapper] pandaids: 6745061829
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,887 [wrapper] cleanup supervisor_pilot  3731 5827
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,896 [wrapper] Test setup, not cleaning
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,905 [wrapper] apfmon messages muted
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,913 [wrapper] ==== wrapper stdout END ====
2025-07-26 23:37:40 (1870496): Guest Log: 2025-07-26 23:37:39,920 [wrapper] ==== wrapper stderr END ====
2025-07-26 23:37:40 (1870496): Guest Log:  *** Error codes and diagnostics ***
2025-07-26 23:37:40 (1870496): Guest Log:     "exeErrorCode": 0,
2025-07-26 23:37:40 (1870496): Guest Log:     "exeErrorDiag": "",
2025-07-26 23:37:40 (1870496): Guest Log:     "pilotErrorCode": 0,
2025-07-26 23:37:40 (1870496): Guest Log:     "pilotErrorDiag": "",
2025-07-26 23:37:40 (1870496): Guest Log:  *** Listing of results directory ***
2025-07-26 23:37:40 (1870496): Guest Log: total 215332
2025-07-26 23:37:40 (1870496): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 25 20:16 pilot3.tar.gz
2025-07-26 23:37:40 (1870496): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 25 20:38 runpilot2-wrapper.sh
2025-07-26 23:37:40 (1870496): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 25 20:38 queuedata.json
2025-07-26 23:37:40 (1870496): Guest Log: -rw-r--r--. 1 atlas atlas      5989 Jul 26 03:46 init_data.xml
2025-07-26 23:37:40 (1870496): Guest Log: -rw-r--r--. 1 atlas atlas     15095 Jul 26 03:46 start_atlas.sh
2025-07-26 23:37:40 (1870496): Guest Log: -rw-r--r--. 1 atlas atlas    542886 Jul 26 03:46 input.tar.gz
2025-07-26 23:37:40 (1870496): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 26 03:46 EVNT.45743347._001487.pool.root.1 -> /data/./ATLAS.root_0
2025-07-26 23:37:40 (1870496): Guest Log: -rw-r--r--. 1 atlas atlas      2562 Jul 26 03:47 pandaJob.out
2025-07-26 23:37:40 (1870496): Guest Log: -rw-------. 1 atlas atlas    980001 Jul 26 03:49 agis_schedconf.cvmfs.json
2025-07-26 23:37:40 (1870496): Guest Log: drwx------. 4 atlas atlas      4096 Jul 26 03:49 pilot3
2025-07-26 23:37:40 (1870496): Guest Log: -rw-------. 1 atlas atlas 203313847 Jul 26 23:35 HITS.45743349._026820.pool.root.1
2025-07-26 23:37:40 (1870496): Guest Log: -rw-------. 1 atlas atlas      1023 Jul 26 23:36 memory_monitor_summary.json
2025-07-26 23:37:40 (1870496): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 26 23:36 agis_ddmendpoints.agis.ALL.json
2025-07-26 23:37:40 (1870496): Guest Log: -rw-------. 1 atlas atlas    772282 Jul 26 23:36 log.45743349._026820.job.log.tgz.1
2025-07-26 23:37:40 (1870496): Guest Log: -rw-------. 1 atlas atlas        95 Jul 26 23:36 pilot_heartbeat.json
2025-07-26 23:37:40 (1870496): Guest Log: -rw-------. 1 atlas atlas      7808 Jul 26 23:37 heartbeat.json
2025-07-26 23:37:40 (1870496): Guest Log: -rw-------. 1 atlas atlas      4726 Jul 26 23:37 pilotlog.txt
2025-07-26 23:37:40 (1870496): Guest Log: -rw-------. 1 atlas atlas   5912146 Jul 26 23:37 log.45743349._026820.job.log.1
2025-07-26 23:37:40 (1870496): Guest Log: -rw-------. 1 atlas atlas       357 Jul 26 23:37 output.list
2025-07-26 23:37:40 (1870496): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 26 23:37 runtime_log
2025-07-26 23:37:40 (1870496): Guest Log: -rw-------. 1 atlas atlas   6707200 Jul 26 23:37 result.tar.gz
2025-07-26 23:37:40 (1870496): Guest Log: -rw-------. 1 atlas atlas       658 Jul 26 23:37 WR2LDmDMez7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1OQLDmadUcCo.diag
2025-07-26 23:37:40 (1870496): Guest Log: -rw-r--r--. 1 atlas atlas      8476 Jul 26 23:37 runtime_log.err
2025-07-26 23:37:40 (1870496): Guest Log: Looking for outputfile HITS.45743349._026820.pool.root.1
2025-07-26 23:37:40 (1870496): Guest Log: HITS file was successfully produced
2025-07-26 23:37:40 (1870496): Guest Log: -rw-------. 1 atlas atlas 203313847 Jul 26 23:35 /home/atlas/RunAtlas/HITS.45743349._026820.pool.root.1
2025-07-26 23:37:41 (1870496): Guest Log: Successfully finished the ATLAS job!
2025-07-26 23:37:41 (1870496): Guest Log: Copying the results back to the shared directory!
2025-07-26 23:37:41 (1870496): Guest Log:  *** Contents of shared directory: ***
2025-07-26 23:37:41 (1870496): Guest Log: total 230764
2025-07-26 23:37:41 (1870496): Guest Log: -rw-r--r--. 1 root root 229021702 Jul 26 03:44 ATLAS.root_0
2025-07-26 23:37:41 (1870496): Guest Log: -rw-r--r--. 1 root root      5989 Jul 26 03:44 init_data.xml
2025-07-26 23:37:41 (1870496): Guest Log: -rw-r--r--. 1 root root    542886 Jul 26 03:44 input.tar.gz
2025-07-26 23:37:41 (1870496): Guest Log: -rw-r--r--. 1 root root   6707200 Jul 26 23:37 result.tar.gz
2025-07-26 23:37:41 (1870496): Guest Log: -rw-r--r--. 1 root root     15095 Jul 26 03:44 start_atlas.sh
2025-07-26 23:37:41 (1870496): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-26 23:37:41 (1870496): VM Completion File Detected.
2025-07-26 23:37:41 (1870496): Powering off VM.
2025-07-26 23:37:43 (1870496): Successfully stopped VM.
2025-07-26 23:37:43 (1870496): Deregistering VM. (boinc_bfb8e4d8faa4d6c8, slot#1)
2025-07-26 23:37:43 (1870496): Removing network bandwidth throttle group from VM.
2025-07-26 23:37:43 (1870496): Removing VM from VirtualBox.
23:37:48 (1870496): called boinc_finish(0)

</stderr_txt>
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