Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:10:59 (4098551): wrapper (7.7.26015): starting
23:10:59 (4098551): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 23:10:59] Arguments: --nthreads 12
[2025-07-25 23:10:59] Threads: 12
[2025-07-25 23:10:59] Checking for CVMFS
[2025-07-25 23:11:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 23:11:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 23:11:01] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 23:11:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 23:11:04] 2.12.6.0 3074763 97855 743792 148761 2 152 19488141 32935936 30396 16776704 2 191243721 99.661 221811247 7092 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 23:11:04] CVMFS is ok
[2025-07-25 23:11:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 23:11:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 23:11:04] Further information can be found at the LHC@home message board.
[2025-07-25 23:11:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 23:11:04] Checking for apptainer binary...
[2025-07-25 23:11:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 23:11:04] Running /usr/bin/apptainer --version
[2025-07-25 23:11:04] apptainer version 1.4.1-1.el9
[2025-07-25 23:11:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 23:11:06] c6-12-25-1.aglt2.org
[2025-07-25 23:11:06] apptainer works
[2025-07-25 23:11:06] Set ATHENA_PROC_NUMBER=12
[2025-07-25 23:11:06] Set ATHENA_CORE_NUMBER=12
[2025-07-25 23:11:06] Starting ATLAS job with PandaID=6745062126
[2025-07-25 23:11:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 15:13:31]  *** The last 200 lines of the pilot log: ***
[2025-07-26 15:13:31] 2025-07-26 19:12:30,328 | INFO     | intersect: -4993873468.625786
[2025-07-26 15:13:31] 2025-07-26 19:12:30,388 | INFO     | chi2: 13.453865254385837
[2025-07-26 15:13:31] 2025-07-26 19:12:30,450 | INFO     | sum of square deviations: 252641887420.5769
[2025-07-26 15:13:31] 2025-07-26 19:12:31,254 | INFO     | sum of deviations: 1003699596742.7375
[2025-07-26 15:13:31] 2025-07-26 19:12:31,274 | INFO     | mean x: 1753528299.3918629
[2025-07-26 15:13:31] 2025-07-26 19:12:31,274 | INFO     | mean y: 2220929.7548179873
[2025-07-26 15:13:31] 2025-07-26 19:12:31,275 | INFO     | -- intersect: -6964223411.466659
[2025-07-26 15:13:31] 2025-07-26 19:12:31,275 | INFO     | intersect: -6964223411.466659
[2025-07-26 15:13:31] 2025-07-26 19:12:31,320 | INFO     | chi2: 9.687790377042447
[2025-07-26 15:13:31] 2025-07-26 19:12:31,321 | INFO     | current chi2=9.687790377042447 (change=27.99251223447243 %)
[2025-07-26 15:13:31] 2025-07-26 19:12:31,375 | INFO     | sum of square deviations: 248606336613.28445
[2025-07-26 15:13:31] 2025-07-26 19:12:31,558 | INFO     | monitor loop #1623: job 0:6745062126 is in state 'finished'
[2025-07-26 15:13:31] 2025-07-26 19:12:31,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:13:31] 2025-07-26 19:12:32,239 | INFO     | sum of deviations: 1083586317935.7142
[2025-07-26 15:13:31] 2025-07-26 19:12:32,240 | INFO     | mean x: 1753528146.8977394
[2025-07-26 15:13:31] 2025-07-26 19:12:32,240 | INFO     | mean y: 2223939.386437029
[2025-07-26 15:13:31] 2025-07-26 19:12:32,241 | INFO     | -- intersect: -7640779589.720007
[2025-07-26 15:13:31] 2025-07-26 19:12:32,241 | INFO     | intersect: -7640779589.720007
[2025-07-26 15:13:31] 2025-07-26 19:12:32,300 | INFO     | chi2: 8.804836573138745
[2025-07-26 15:13:31] 2025-07-26 19:12:32,301 | INFO     | current chi2=8.804836573138745 (change=9.1140886573689 %)
[2025-07-26 15:13:31] 2025-07-26 19:12:32,301 | INFO     | right removable region: 928
[2025-07-26 15:13:31] 2025-07-26 19:12:32,368 | INFO     | sum of square deviations: 252640923870.1413
[2025-07-26 15:13:31] 2025-07-26 19:12:32,847 | INFO     | 57602s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-26 15:13:31] 2025-07-26 19:12:33,066 | INFO     | sum of deviations: 455256048734.3202
[2025-07-26 15:13:31] 2025-07-26 19:12:33,066 | INFO     | mean x: 1753528604.3897216
[2025-07-26 15:13:31] 2025-07-26 19:12:33,067 | INFO     | mean y: 2221073.158458244
[2025-07-26 15:13:31] 2025-07-26 19:12:33,067 | INFO     | -- intersect: -3157617370.85944
[2025-07-26 15:13:31] 2025-07-26 19:12:33,067 | INFO     | intersect: -3157617370.85944
[2025-07-26 15:13:31] 2025-07-26 19:12:33,119 | INFO     | chi2: 9.501894694502683
[2025-07-26 15:13:31] 2025-07-26 19:12:33,119 | INFO     | current chi2=9.501894694502683 (change=29.37423918821283 %)
[2025-07-26 15:13:31] 2025-07-26 19:12:33,160 | INFO     | sum of square deviations: 248604751470.87204
[2025-07-26 15:13:31] 2025-07-26 19:12:33,753 | INFO     | sum of deviations: 269053223148.29663
[2025-07-26 15:13:31] 2025-07-26 19:12:33,753 | INFO     | mean x: 1753528756.8955867
[2025-07-26 15:13:31] 2025-07-26 19:12:33,754 | INFO     | mean y: 2228106.2917115176
[2025-07-26 15:13:31] 2025-07-26 19:12:33,754 | INFO     | -- intersect: -1895533546.0283625
[2025-07-26 15:13:31] 2025-07-26 19:12:33,754 | INFO     | intersect: -1895533546.0283625
[2025-07-26 15:13:31] 2025-07-26 19:12:33,835 | INFO     | chi2: 7.757713827212548
[2025-07-26 15:13:31] 2025-07-26 19:12:33,948 | INFO     | current chi2=7.757713827212548 (change=18.356137626943287 %)
[2025-07-26 15:13:31] 2025-07-26 19:12:33,948 | INFO     | left removable region: 20
[2025-07-26 15:13:31] 2025-07-26 19:12:34,036 | INFO     | sum of square deviations: 232123277676.05664
[2025-07-26 15:13:31] 2025-07-26 19:12:34,197 | INFO     | monitor loop #1624: job 0:6745062126 is in state 'finished'
[2025-07-26 15:13:31] 2025-07-26 19:12:34,197 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:13:31] 2025-07-26 19:12:35,158 | INFO     | sum of deviations: 368823417297.4647
[2025-07-26 15:13:31] 2025-07-26 19:12:35,159 | INFO     | mean x: 1753528726.4262114
[2025-07-26 15:13:31] 2025-07-26 19:12:35,239 | INFO     | mean y: 2251808.3502202644
[2025-07-26 15:13:31] 2025-07-26 19:12:35,240 | INFO     | -- intersect: -2783950694.409362
[2025-07-26 15:13:31] 2025-07-26 19:12:35,240 | INFO     | intersect: -2783950694.409362
[2025-07-26 15:13:31] 2025-07-26 19:12:35,329 | INFO     | chi2: 1.4144776702706445
[2025-07-26 15:13:31] 2025-07-26 19:12:35,329 | INFO     | -- intersect: -2783950694.409362
[2025-07-26 15:13:31] 2025-07-26 19:12:35,330 | INFO     | current memory leak: 1.59 B/s (using 908 data points, chi2=1.41)
[2025-07-26 15:13:31] 2025-07-26 19:12:35,332 | INFO     | could have reported an average CPU frequency of 999 MHz (34 samples)
[2025-07-26 15:13:31] 2025-07-26 19:12:35,420 | INFO     | ..............................
[2025-07-26 15:13:31] 2025-07-26 19:12:35,420 | INFO     | . Timing measurements:
[2025-07-26 15:13:31] 2025-07-26 19:12:35,420 | INFO     | . get job = 1 s
[2025-07-26 15:13:31] 2025-07-26 19:12:35,421 | INFO     | . initial setup = 11 s
[2025-07-26 15:13:31] 2025-07-26 19:12:35,421 | INFO     | . payload setup = 96 s
[2025-07-26 15:13:31] 2025-07-26 19:12:35,421 | INFO     | . stage-in = 2 s
[2025-07-26 15:13:31] 2025-07-26 19:12:35,421 | INFO     | . payload execution = 57276 s
[2025-07-26 15:13:31] 2025-07-26 19:12:35,421 | INFO     | . stage-out = 16 s
[2025-07-26 15:13:31] 2025-07-26 19:12:35,422 | INFO     | . log creation = 4 s
[2025-07-26 15:13:31] 2025-07-26 19:12:35,422 | INFO     | ..............................
[2025-07-26 15:13:31] 2025-07-26 19:12:35,615 [wrapper] supervise_pilot (15 min periods counter: 65)
[2025-07-26 15:13:31] 2025-07-26 19:12:41,066 | INFO     | 
[2025-07-26 15:13:31] 2025-07-26 19:12:41,067 | INFO     | job summary report
[2025-07-26 15:13:31] 2025-07-26 19:12:41,071 | INFO     | --------------------------------------------------
[2025-07-26 15:13:31] 2025-07-26 19:12:41,072 | INFO     | PanDA job id: 6745062126
[2025-07-26 15:13:31] 2025-07-26 19:12:41,072 | INFO     | task id: 45743349
[2025-07-26 15:13:31] 2025-07-26 19:12:41,072 | INFO     | errors: (none)
[2025-07-26 15:13:31] 2025-07-26 19:12:41,096 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 15:13:31] 2025-07-26 19:12:41,096 | INFO     | pilot state: finished 
[2025-07-26 15:13:31] 2025-07-26 19:12:41,101 | INFO     | transexitcode: 0
[2025-07-26 15:13:31] 2025-07-26 19:12:41,101 | INFO     | exeerrorcode: 0
[2025-07-26 15:13:31] 2025-07-26 19:12:41,101 | INFO     | exeerrordiag: 
[2025-07-26 15:13:31] 2025-07-26 19:12:41,101 | INFO     | exitcode: 0
[2025-07-26 15:13:31] 2025-07-26 19:12:41,102 | INFO     | exitmsg: OK
[2025-07-26 15:13:31] 2025-07-26 19:12:41,102 | INFO     | cpuconsumptiontime: 126559 s
[2025-07-26 15:13:31] 2025-07-26 19:12:41,102 | INFO     | nevents: 400
[2025-07-26 15:13:31] 2025-07-26 19:12:41,102 | INFO     | neventsw: 0
[2025-07-26 15:13:31] 2025-07-26 19:12:41,103 | INFO     | pid: 4161924
[2025-07-26 15:13:31] 2025-07-26 19:12:41,103 | INFO     | pgrp: 4161924
[2025-07-26 15:13:31] 2025-07-26 19:12:41,103 | INFO     | corecount: 12
[2025-07-26 15:13:31] 2025-07-26 19:12:41,103 | INFO     | event service: False
[2025-07-26 15:13:31] 2025-07-26 19:12:41,103 | INFO     | sizes: {0: 2396641, 1: 2397242, 2: 2397326, 4: 2397354, 5: 2397354, 6: 2397581, 7: 2397737, 8: 2397765, 21: 2397793, 33: 2397821, 46: 2397877, 61: 2398475, 73: 239
[2025-07-26 15:13:31] 2025-07-26 19:12:41,103 | INFO     | --------------------------------------------------
[2025-07-26 15:13:31] 2025-07-26 19:12:41,104 | INFO     | 
[2025-07-26 15:13:31] 2025-07-26 19:12:41,104 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-07-26 15:13:31] 2025-07-26 19:12:41,559 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,560 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,560 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,561 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,561 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,561 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,613 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,614 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,614 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,614 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,615 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,615 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,615 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,615 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,615 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,616 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 15:13:31] 2025-07-26 19:12:41,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,617 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 15:13:31] 2025-07-26 19:12:41,617 | INFO     | job 6745062126 has completed (purged errors)
[2025-07-26 15:13:31] 2025-07-26 19:12:41,669 | INFO     | overall cleanup function is called
[2025-07-26 15:13:31] 2025-07-26 19:12:42,854 | INFO     | --- collectZombieJob: --- 10, [4161924]
[2025-07-26 15:13:31] 2025-07-26 19:12:42,855 | INFO     | zombie collector waiting for pid 4161924
[2025-07-26 15:13:31] 2025-07-26 19:12:42,855 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 15:13:31] 2025-07-26 19:12:42,856 | INFO     | collected zombie processes
[2025-07-26 15:13:31] 2025-07-26 19:12:42,856 | INFO     | will attempt to kill all subprocesses of pid=4161924
[2025-07-26 15:13:31] 2025-07-26 19:12:50,324 | INFO     | PID=4114164 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-26 15:13:31] 2025-07-26 19:12:50,325 | INFO     | .. there are 51 such processes running
[2025-07-26 15:13:31] 2025-07-26 19:12:50,614 | INFO     | process IDs to be killed: [4161924] (in reverse order)
[2025-07-26 15:13:31] 2025-07-26 19:12:51,302 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 15:13:31] 2025-07-26 19:12:51,303 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 15:13:31] 2025-07-26 19:12:51,512 | INFO     | did not find any defunct processes belonging to 4161924
[2025-07-26 15:13:31] 2025-07-26 19:12:51,832 | INFO     | did not find any defunct processes belonging to 4161924
[2025-07-26 15:13:31] 2025-07-26 19:12:51,833 | INFO     | ready for new job
[2025-07-26 15:13:31] 2025-07-26 19:12:51,833 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 15:13:31] 2025-07-26 19:12:51,847 | INFO     | ***************************************
[2025-07-26 15:13:31] 2025-07-26 19:12:51,848 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 15:13:31] 2025-07-26 19:12:51,848 | INFO     | ***************************************
[2025-07-26 15:13:31] 2025-07-26 19:12:51,849 | INFO     | 
[2025-07-26 15:13:31] 2025-07-26 19:12:51,917 | INFO     | architecture information:
[2025-07-26 15:13:31] 2025-07-26 19:12:51,931 | INFO     | executing command: cat /etc/os-release
[2025-07-26 15:13:31] 2025-07-26 19:12:52,055 | INFO     | cat /etc/os-release:
[2025-07-26 15:13:31] NAME="CentOS Linux"
[2025-07-26 15:13:31] VERSION="7 (Core)"
[2025-07-26 15:13:31] ID="centos"
[2025-07-26 15:13:31] ID_LIKE="rhel fedora"
[2025-07-26 15:13:31] VERSION_ID="7"
[2025-07-26 15:13:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 15:13:31] ANSI_COLOR="0;31"
[2025-07-26 15:13:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 15:13:31] HOME_URL="https://www.centos.org/"
[2025-07-26 15:13:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 15:13:31] 
[2025-07-26 15:13:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 15:13:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 15:13:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 15:13:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 15:13:31] 
[2025-07-26 15:13:31] 2025-07-26 19:12:52,056 | INFO     | ***************************************
[2025-07-26 15:13:31] 2025-07-26 19:12:52,560 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-07-26 15:13:31] 2025-07-26 19:12:52,814 | INFO     | sufficient remaining disk space (71749861376 B)
[2025-07-26 15:13:31] 2025-07-26 19:12:52,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 15:13:31] 2025-07-26 19:12:52,830 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 15:13:31] 2025-07-26 19:12:52,830 | INFO     | update_server=False
[2025-07-26 15:13:31] 2025-07-26 19:12:52,831 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 15:13:31] 2025-07-26 19:12:52,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 15:13:31] 2025-07-26 19:12:52,935 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 15:13:31] 2025-07-26 19:12:52,941 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 15:13:31] 2025-07-26 19:12:52,942 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 15:13:31] 2025-07-26 19:12:52,942 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:13:31] 2025-07-26 19:12:52,943 | INFO     | will abort loop
[2025-07-26 15:13:31] 2025-07-26 19:12:53,468 | INFO     | all data control threads have been joined
[2025-07-26 15:13:31] 2025-07-26 19:12:53,647 | INFO     | all job control threads have been joined
[2025-07-26 15:13:31] 2025-07-26 19:12:53,837 | INFO     | [job] retrieve thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:53,950 | INFO     | [job] job monitor thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:53,985 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:53,986 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:53,986 | INFO     | [data] copytool_in thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:54,076 | INFO     | [job] validate thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:54,118 | INFO     | all payload control threads have been joined
[2025-07-26 15:13:31] 2025-07-26 19:12:54,154 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:54,219 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:13:31] 2025-07-26 19:12:54,475 | INFO     | [data] control thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:54,654 | INFO     | [job] control thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:54,722 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:54,739 | INFO     | [payload] validate_post thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:54,756 | INFO     | [payload] failed_post thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:54,975 | INFO     | [data] copytool_out thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:55,125 | INFO     | [payload] control thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:55,245 | INFO     | [job] queue monitor thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:56,865 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 15:13:31] 2025-07-26 19:12:57,673 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140183321773888)>', '<ExcThread(monitor, started 140182690981632)>']
[2025-07-26 15:13:31] 2025-07-26 19:13:02,699 | INFO     | all workflow threads have been joined
[2025-07-26 15:13:31] 2025-07-26 19:13:02,700 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 15:13:31] 2025-07-26 19:13:02,701 | INFO     | traces error code: 0
[2025-07-26 15:13:31] 2025-07-26 19:13:02,701 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 15:13:31] 2025-07-26 19:13:29,136 | INFO     | PID=4114164 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 15:13:31] 2025-07-26 19:13:29,148 | INFO     | .. there are 51 such processes running
[2025-07-26 15:13:31] 2025-07-26 19:13:29,158 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 15:13:31] 2025-07-26 19:13:29,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 15:13:31] 2025-07-26 19:13:29,159 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 15:13:31] 2025-07-26 19:13:29,159 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 15:13:31] 2025-07-26 19:13:29,159 | INFO     | [monitor] control thread has ended
[2025-07-26 15:13:31] 2025-07-26 19:13:29,999 [wrapper] ==== pilot stdout END ====
[2025-07-26 15:13:31] 2025-07-26 19:13:30,039 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 15:13:31] 2025-07-26 19:13:30,045 [wrapper] pilotpid: 4114164
[2025-07-26 15:13:31] 2025-07-26 19:13:30,051 [wrapper] Pilot exit status: 0
[2025-07-26 15:13:31] 2025-07-26 19:13:30,223 [wrapper] pandaids: 6745062126
[2025-07-26 15:13:31] 2025-07-26 19:13:30,816 [wrapper] cleanup supervisor_pilot 2711001 4114165
[2025-07-26 15:13:31] 2025-07-26 19:13:30,837 [wrapper] Test setup, not cleaning
[2025-07-26 15:13:31] 2025-07-26 19:13:30,856 [wrapper] apfmon messages muted
[2025-07-26 15:13:31] 2025-07-26 19:13:30,876 [wrapper] ==== wrapper stdout END ====
[2025-07-26 15:13:31] 2025-07-26 19:13:30,921 [wrapper] ==== wrapper stderr END ====
[2025-07-26 15:13:31]  *** Error codes and diagnostics ***
[2025-07-26 15:13:31]     "exeErrorCode": 0,
[2025-07-26 15:13:31]     "exeErrorDiag": "",
[2025-07-26 15:13:31]     "pilotErrorCode": 0,
[2025-07-26 15:13:31]     "pilotErrorDiag": "",
[2025-07-26 15:13:31]  *** Listing of results directory ***
[2025-07-26 15:13:31] total 357408
[2025-07-26 15:13:31] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 16:46 pilot3.tar.gz
[2025-07-26 15:13:31] -rwx------. 1 boincer umatlas     36292 Jul 25 16:49 runpilot2-wrapper.sh
[2025-07-26 15:13:31] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 16:49 queuedata.json
[2025-07-26 15:13:31] -rw-r--r--. 1 boincer umatlas       100 Jul 25 23:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 15:13:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 23:10 run_atlas
[2025-07-26 15:13:31] -rw-r--r--. 1 boincer umatlas       105 Jul 25 23:10 job.xml
[2025-07-26 15:13:31] -rw-r--r--. 2 boincer umatlas 148687803 Jul 25 23:10 EVNT.45743347._001497.pool.root.1
[2025-07-26 15:13:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 23:10 start_atlas.sh
[2025-07-26 15:13:31] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 23:10 shared
[2025-07-26 15:13:31] -rw-r--r--. 2 boincer umatlas    542876 Jul 25 23:10 input.tar.gz
[2025-07-26 15:13:31] -rw-r--r--. 1 boincer umatlas         0 Jul 25 23:10 boinc_lockfile
[2025-07-26 15:13:31] -rw-r--r--. 1 boincer umatlas      2560 Jul 25 23:11 pandaJob.out
[2025-07-26 15:13:31] -rw-------. 1 boincer umatlas    979977 Jul 25 23:12 agis_schedconf.cvmfs.json
[2025-07-26 15:13:31] drwx------. 4 boincer umatlas      4096 Jul 25 23:12 pilot3
[2025-07-26 15:13:31] -rw-------. 1 boincer umatlas 206459833 Jul 26 15:04 HITS.45743349._027051.pool.root.1
[2025-07-26 15:13:31] -rw-r--r--. 1 boincer umatlas       532 Jul 26 15:05 boinc_task_state.xml
[2025-07-26 15:13:31] -rw-------. 1 boincer umatlas      1042 Jul 26 15:11 memory_monitor_summary.json
[2025-07-26 15:13:31] -rw-------. 1 boincer umatlas   1593052 Jul 26 15:11 agis_ddmendpoints.agis.ALL.json
[2025-07-26 15:13:31] -rw-------. 1 boincer umatlas    701187 Jul 26 15:11 log.45743349._027051.job.log.tgz.1
[2025-07-26 15:13:31] -rw-r--r--. 1 boincer umatlas      6858 Jul 26 15:11 init_data.xml
[2025-07-26 15:13:31] -rw-------. 1 boincer umatlas      7830 Jul 26 15:12 heartbeat.json
[2025-07-26 15:13:31] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 15:13 boinc_mmap_file
[2025-07-26 15:13:31] -rw-r--r--. 1 boincer umatlas        29 Jul 26 15:13 wrapper_checkpoint.txt
[2025-07-26 15:13:31] -rw-------. 1 boincer umatlas        96 Jul 26 15:13 pilot_heartbeat.json
[2025-07-26 15:13:31] -rw-------. 1 boincer umatlas       823 Jul 26 15:13 pilotlog.txt
[2025-07-26 15:13:31] -rw-------. 1 boincer umatlas   2776669 Jul 26 15:13 log.45743349._027051.job.log.1
[2025-07-26 15:13:31] -rw-------. 1 boincer umatlas       357 Jul 26 15:13 output.list
[2025-07-26 15:13:31] -rw-r--r--. 1 boincer umatlas       620 Jul 26 15:13 runtime_log
[2025-07-26 15:13:31] -rw-------. 1 boincer umatlas   3502080 Jul 26 15:13 result.tar.gz
[2025-07-26 15:13:31] -rw-r--r--. 1 boincer umatlas      8673 Jul 26 15:13 runtime_log.err
[2025-07-26 15:13:31] -rw-------. 1 boincer umatlas       662 Jul 26 15:13 lxNLDmhXez7n9Rq4apOajLDm4fhM0noT9bVof3QYDmiazKDmUptMwm.diag
[2025-07-26 15:13:31] -rw-r--r--. 1 boincer umatlas     21389 Jul 26 15:13 stderr.txt
[2025-07-26 15:13:32] HITS file was successfully produced:
[2025-07-26 15:13:32] -rw-------. 1 boincer umatlas 206459833 Jul 26 15:04 shared/HITS.pool.root.1
[2025-07-26 15:13:32]  *** Contents of shared directory: ***
[2025-07-26 15:13:32] total 350804
[2025-07-26 15:13:32] -rw-r--r--. 2 boincer umatlas 148687803 Jul 25 23:10 ATLAS.root_0
[2025-07-26 15:13:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 23:10 start_atlas.sh
[2025-07-26 15:13:32] -rw-r--r--. 2 boincer umatlas    542876 Jul 25 23:10 input.tar.gz
[2025-07-26 15:13:32] -rw-------. 1 boincer umatlas 206459833 Jul 26 15:04 HITS.pool.root.1
[2025-07-26 15:13:32] -rw-------. 1 boincer umatlas   3502080 Jul 26 15:13 result.tar.gz
15:13:33 (4098551): run_atlas exited; CPU time 131196.148527
15:13:33 (4098551): called boinc_finish(0)

</stderr_txt>
]]>

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