Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
13:47:40 (2835684): wrapper (7.7.26015): starting
13:47:40 (2835684): wrapper: running run_atlas (--nthreads 6)
[2025-07-27 13:47:40] Arguments: --nthreads 6
[2025-07-27 13:47:40] Threads: 6
[2025-07-27 13:47:40] Checking for CVMFS
[2025-07-27 13:47:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 13:47:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 13:47:40] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 13:47:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 13:47:41] 2.12.7.0 1004224 7163 62428 148811 1 57 3653356 6144001 0 130560 0 5109028 99.989 264997 3547 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.46:3128 1
[2025-07-27 13:47:41] CVMFS is ok
[2025-07-27 13:47:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:47:41] Checking for apptainer binary...
[2025-07-27 13:47:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 13:47:41] Running /usr/bin/apptainer --version
[2025-07-27 13:47:41] apptainer version 1.4.0
[2025-07-27 13:47:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:47:41] Beta
[2025-07-27 13:47:41] apptainer works
[2025-07-27 13:47:41] Set ATHENA_PROC_NUMBER=6
[2025-07-27 13:47:41] Set ATHENA_CORE_NUMBER=6
[2025-07-27 13:47:41] Starting ATLAS job with PandaID=6745061712
[2025-07-27 13:47:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 15:14:53]  *** The last 200 lines of the pilot log: ***
[2025-07-27 15:14:53]  protocol_id=None
[2025-07-27 15:14:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 15:14:53]  replicas=None
[2025-07-27 15:14:53]  scope=mc23_13p6TeV
[2025-07-27 15:14:53]  status=None
[2025-07-27 15:14:53]  status_code=0
[2025-07-27 15:14:53]  storage_token=
[2025-07-27 15:14:53]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6745061712/log.45743349._026703.job.log.tgz.1
[2025-07-27 15:14:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f3/42/log.45743349._026703.job.log.tgz.1
[2025-07-27 15:14:53]  workdir=None
[2025-07-27 15:14:53] ]
[2025-07-27 15:14:53] 2025-07-27 13:14:12,438 | INFO     | transferring file log.45743349._026703.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6745061712/log.45743349._026703.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-27 15:14:53] 2025-07-27 13:14:12,438 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6745061712/log.45743349._026703.job.log.tgz.1 /var/lib/boinc/slots/0/log.45743349._026703.job
[2025-07-27 15:14:53] 2025-07-27 13:14:12,447 | INFO     | adding to output.list: log.45743349._026703.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f3/42/log.45743349._026703.job.log.tg
[2025-07-27 15:14:53] 2025-07-27 13:14:12,447 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 15:14:53] 2025-07-27 13:14:12,447 | INFO     | summary of transferred files:
[2025-07-27 15:14:53] 2025-07-27 13:14:12,447 | INFO     |  -- lfn=log.45743349._026703.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 15:14:53] 2025-07-27 13:14:12,447 | INFO     | stage-out finished correctly
[2025-07-27 15:14:53] 2025-07-27 13:14:14,787 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 15:14:53] 2025-07-27 13:14:17,476 | INFO     | job 6745061712 has state=finished
[2025-07-27 15:14:53] 2025-07-27 13:14:17,476 | INFO     | preparing for final server update for job 6745061712 in state='finished'
[2025-07-27 15:14:53] 2025-07-27 13:14:17,478 | INFO     | this job has now completed (state=finished)
[2025-07-27 15:14:53] 2025-07-27 13:14:17,478 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 15:14:53] 2025-07-27 13:14:17,478 | INFO     | log transfer has been attempted: DONE
[2025-07-27 15:14:53] 2025-07-27 13:14:17,478 | INFO     | job 6745061712 has finished - writing final server update
[2025-07-27 15:14:53] 2025-07-27 13:14:17,479 | INFO     | total number of processed events: 400 (read)
[2025-07-27 15:14:53] 2025-07-27 13:14:17,482 | INFO     | executing command: lscpu
[2025-07-27 15:14:53] 2025-07-27 13:14:17,500 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 15:14:53] 2025-07-27 13:14:18,540 | WARNING  | process 2845777 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 15:14:53] 2025-07-27 13:14:18,541 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6745061712/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 15:14:53] 2025-07-27 13:14:18,594 | INFO     | number of running child processes to parent process 2845777: 1
[2025-07-27 15:14:53] 2025-07-27 13:14:18,595 | INFO     | maximum number of monitored processes: 6
[2025-07-27 15:14:53] 2025-07-27 13:14:18,637 | INFO     | 5193s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 15:14:53] 2025-07-27 13:14:21,098 | INFO     | monitor loop #398: job 0:6745061712 is in state 'finished'
[2025-07-27 15:14:53] 2025-07-27 13:14:21,098 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 15:14:53] 2025-07-27 13:14:21,389 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 15:14:53] 2025-07-27 13:14:21,390 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 3700.2131249999998
[2025-07-27 15:14:53] 2025-07-27 13:14:21,390 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6745061712/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 15:14:53] 2025-07-27 13:14:21,391 | INFO     | extracted standard info from prmon json
[2025-07-27 15:14:53] 2025-07-27 13:14:21,391 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 15:14:53] 2025-07-27 13:14:21,391 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 15:14:53] 2025-07-27 13:14:21,391 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 15:14:53] 2025-07-27 13:14:21,391 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 15:14:53] 2025-07-27 13:14:21,392 | INFO     | fitting pss+swap vs Time
[2025-07-27 15:14:53] 2025-07-27 13:14:21,392 | INFO     | sum of square deviations: 147126479.5
[2025-07-27 15:14:53] 2025-07-27 13:14:21,392 | INFO     | sum of deviations: -11875075021.000002
[2025-07-27 15:14:53] 2025-07-27 13:14:21,392 | INFO     | mean x: 1753619537.5
[2025-07-27 15:14:53] 2025-07-27 13:14:21,392 | INFO     | mean y: 2614127.6153846155
[2025-07-27 15:14:53] 2025-07-27 13:14:21,392 | INFO     | -- intersect: 141543169144.45602
[2025-07-27 15:14:53] 2025-07-27 13:14:21,392 | INFO     | intersect: 141543169144.45602
[2025-07-27 15:14:53] 2025-07-27 13:14:21,392 | INFO     | chi2: 0.12495035623191111
[2025-07-27 15:14:53] 2025-07-27 13:14:21,392 | INFO     | -- intersect: 141543169144.45602
[2025-07-27 15:14:53] 2025-07-27 13:14:21,392 | INFO     | current memory leak: -80.71 B/s (using 78 data points, chi2=0.12)
[2025-07-27 15:14:53] 2025-07-27 13:14:21,393 | INFO     | could have reported an average CPU frequency of 3700 MHz (6 samples)
[2025-07-27 15:14:53] 2025-07-27 13:14:21,393 | INFO     | ..............................
[2025-07-27 15:14:53] 2025-07-27 13:14:21,393 | INFO     | . Timing measurements:
[2025-07-27 15:14:53] 2025-07-27 13:14:21,393 | INFO     | . get job = 0 s
[2025-07-27 15:14:53] 2025-07-27 13:14:21,393 | INFO     | . initial setup = 1 s
[2025-07-27 15:14:53] 2025-07-27 13:14:21,393 | INFO     | . payload setup = 3 s
[2025-07-27 15:14:53] 2025-07-27 13:14:21,393 | INFO     | . stage-in = 0 s
[2025-07-27 15:14:53] 2025-07-27 13:14:21,393 | INFO     | . payload execution = 5166 s
[2025-07-27 15:14:53] 2025-07-27 13:14:21,393 | INFO     | . stage-out = 0 s
[2025-07-27 15:14:53] 2025-07-27 13:14:21,393 | INFO     | . log creation = 0 s
[2025-07-27 15:14:53] 2025-07-27 13:14:21,393 | INFO     | ..............................
[2025-07-27 15:14:53] 2025-07-27 13:14:21,855 | INFO     | 
[2025-07-27 15:14:53] 2025-07-27 13:14:21,855 | INFO     | job summary report
[2025-07-27 15:14:53] 2025-07-27 13:14:21,856 | INFO     | --------------------------------------------------
[2025-07-27 15:14:53] 2025-07-27 13:14:21,856 | INFO     | PanDA job id: 6745061712
[2025-07-27 15:14:53] 2025-07-27 13:14:21,856 | INFO     | task id: 45743349
[2025-07-27 15:14:53] 2025-07-27 13:14:21,856 | INFO     | errors: (none)
[2025-07-27 15:14:53] 2025-07-27 13:14:21,857 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 15:14:53] 2025-07-27 13:14:21,857 | INFO     | pilot state: finished 
[2025-07-27 15:14:53] 2025-07-27 13:14:21,857 | INFO     | transexitcode: 0
[2025-07-27 15:14:53] 2025-07-27 13:14:21,858 | INFO     | exeerrorcode: 0
[2025-07-27 15:14:53] 2025-07-27 13:14:21,858 | INFO     | exeerrordiag: 
[2025-07-27 15:14:53] 2025-07-27 13:14:21,858 | INFO     | exitcode: 0
[2025-07-27 15:14:53] 2025-07-27 13:14:21,858 | INFO     | exitmsg: OK
[2025-07-27 15:14:53] 2025-07-27 13:14:21,859 | INFO     | cpuconsumptiontime: 29850 s
[2025-07-27 15:14:53] 2025-07-27 13:14:21,859 | INFO     | nevents: 400
[2025-07-27 15:14:53] 2025-07-27 13:14:21,859 | INFO     | neventsw: 0
[2025-07-27 15:14:53] 2025-07-27 13:14:21,859 | INFO     | pid: 2845777
[2025-07-27 15:14:53] 2025-07-27 13:14:21,859 | INFO     | pgrp: 2845777
[2025-07-27 15:14:53] 2025-07-27 13:14:21,860 | INFO     | corecount: 6
[2025-07-27 15:14:53] 2025-07-27 13:14:21,860 | INFO     | event service: False
[2025-07-27 15:14:53] 2025-07-27 13:14:21,860 | INFO     | sizes: {0: 2396645, 1: 2397501, 3: 2397763, 11: 2397791, 5173: 2424323, 5174: 2433504, 5176: 2433504, 5183: 2433698}
[2025-07-27 15:14:53] 2025-07-27 13:14:21,860 | INFO     | --------------------------------------------------
[2025-07-27 15:14:53] 2025-07-27 13:14:21,860 | INFO     | 
[2025-07-27 15:14:53] 2025-07-27 13:14:21,860 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-27 15:14:53] 2025-07-27 13:14:21,874 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,874 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,874 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,875 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,875 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,875 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,875 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,875 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,875 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,875 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,875 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,875 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,875 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,875 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,875 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,875 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,876 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,876 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 15:14:53] 2025-07-27 13:14:21,876 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,876 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 15:14:53] 2025-07-27 13:14:21,876 | INFO     | job 6745061712 has completed (purged errors)
[2025-07-27 15:14:53] 2025-07-27 13:14:21,876 | INFO     | overall cleanup function is called
[2025-07-27 15:14:53] 2025-07-27 13:14:22,884 | INFO     | --- collectZombieJob: --- 10, [2845777]
[2025-07-27 15:14:53] 2025-07-27 13:14:22,885 | INFO     | zombie collector waiting for pid 2845777
[2025-07-27 15:14:53] 2025-07-27 13:14:22,886 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 15:14:53] 2025-07-27 13:14:22,886 | INFO     | collected zombie processes
[2025-07-27 15:14:53] 2025-07-27 13:14:22,886 | INFO     | will attempt to kill all subprocesses of pid=2845777
[2025-07-27 15:14:53] 2025-07-27 13:14:22,941 | INFO     | process IDs to be killed: [2845777] (in reverse order)
[2025-07-27 15:14:53] 2025-07-27 13:14:22,963 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 15:14:53] 2025-07-27 13:14:22,963 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 15:14:53] 2025-07-27 13:14:22,965 | INFO     | did not find any defunct processes belonging to 2845777
[2025-07-27 15:14:53] 2025-07-27 13:14:22,966 | INFO     | did not find any defunct processes belonging to 2845777
[2025-07-27 15:14:53] 2025-07-27 13:14:22,966 | INFO     | ready for new job
[2025-07-27 15:14:53] 2025-07-27 13:14:22,966 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 15:14:53] 2025-07-27 13:14:22,967 | INFO     | ***************************************
[2025-07-27 15:14:53] 2025-07-27 13:14:22,967 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 15:14:53] 2025-07-27 13:14:22,967 | INFO     | ***************************************
[2025-07-27 15:14:53] 2025-07-27 13:14:22,967 | INFO     | 
[2025-07-27 15:14:53] 2025-07-27 13:14:22,967 | INFO     | architecture information:
[2025-07-27 15:14:53] 2025-07-27 13:14:22,968 | INFO     | executing command: cat /etc/os-release
[2025-07-27 15:14:53] 2025-07-27 13:14:22,974 | INFO     | cat /etc/os-release:
[2025-07-27 15:14:53] NAME="CentOS Linux"
[2025-07-27 15:14:53] VERSION="7 (Core)"
[2025-07-27 15:14:53] ID="centos"
[2025-07-27 15:14:53] ID_LIKE="rhel fedora"
[2025-07-27 15:14:53] VERSION_ID="7"
[2025-07-27 15:14:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 15:14:53] ANSI_COLOR="0;31"
[2025-07-27 15:14:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 15:14:53] HOME_URL="https://www.centos.org/"
[2025-07-27 15:14:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 15:14:53] 
[2025-07-27 15:14:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 15:14:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 15:14:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 15:14:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 15:14:53] 
[2025-07-27 15:14:53] 2025-07-27 13:14:22,974 | INFO     | ***************************************
[2025-07-27 15:14:53] 2025-07-27 13:14:23,477 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-27 15:14:53] 2025-07-27 13:14:23,489 | INFO     | sufficient remaining disk space (267153047552 B)
[2025-07-27 15:14:53] 2025-07-27 13:14:23,489 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 15:14:53] 2025-07-27 13:14:23,490 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 15:14:53] 2025-07-27 13:14:23,490 | INFO     | update_server=False
[2025-07-27 15:14:53] 2025-07-27 13:14:23,490 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 15:14:53] 2025-07-27 13:14:23,490 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 15:14:53] 2025-07-27 13:14:23,602 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 15:14:53] 2025-07-27 13:14:23,602 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 15:14:53] 2025-07-27 13:14:23,602 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:14:53] 2025-07-27 13:14:23,603 | INFO     | will abort loop
[2025-07-27 15:14:53] 2025-07-27 13:14:23,628 | INFO     | all data control threads have been joined
[2025-07-27 15:14:53] 2025-07-27 13:14:23,767 | INFO     | all payload control threads have been joined
[2025-07-27 15:14:53] 2025-07-27 13:14:24,495 | INFO     | [job] retrieve thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:24,534 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:24,581 | INFO     | [job] validate thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:24,594 | INFO     | all job control threads have been joined
[2025-07-27 15:14:53] 2025-07-27 13:14:24,608 | INFO     | [job] job monitor thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:24,634 | INFO     | [data] control thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:24,773 | INFO     | [payload] control thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:24,940 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:25,045 | INFO     | [data] copytool_in thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:25,339 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 15:14:53] 2025-07-27 13:14:25,369 | INFO     | [payload] failed_post thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:25,495 | INFO     | [data] copytool_out thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:25,595 | INFO     | [job] control thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:25,932 | INFO     | [payload] validate_post thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:25,967 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:26,442 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:14:53] 2025-07-27 13:14:27,448 | INFO     | [job] queue monitor thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:29,345 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:34,100 | INFO     | job.realtimelogging is not enabled
[2025-07-27 15:14:53] 2025-07-27 13:14:35,105 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 15:14:53] 2025-07-27 13:14:35,569 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955933235008)>', '<ExcThread(monitor, started 139955443582720)>']
[2025-07-27 15:14:53] 2025-07-27 13:14:40,594 | INFO     | all workflow threads have been joined
[2025-07-27 15:14:53] 2025-07-27 13:14:40,595 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 15:14:53] 2025-07-27 13:14:40,595 | INFO     | traces error code: 0
[2025-07-27 15:14:53] 2025-07-27 13:14:40,596 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 15:14:53] 2025-07-27 13:14:53,784 | INFO     | PID=2839313 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 15:14:53] 2025-07-27 13:14:53,784 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 15:14:53] 2025-07-27 13:14:53,784 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 15:14:53] 2025-07-27 13:14:53,784 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 15:14:53] 2025-07-27 13:14:53,784 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 15:14:53] 2025-07-27 13:14:53,784 | INFO     | [monitor] control thread has ended
[2025-07-27 15:14:53] 2025-07-27 13:14:53,845 [wrapper] ==== pilot stdout END ====
[2025-07-27 15:14:53] 2025-07-27 13:14:53,847 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 15:14:53] 2025-07-27 13:14:53,849 [wrapper] pilotpid: 2839313
[2025-07-27 15:14:53] 2025-07-27 13:14:53,850 [wrapper] Pilot exit status: 0
[2025-07-27 15:14:53] 2025-07-27 13:14:53,855 [wrapper] pandaids: 6745061712
[2025-07-27 15:14:53] 2025-07-27 13:14:53,870 [wrapper] cleanup supervisor_pilot 2857654 2839314
[2025-07-27 15:14:53] 2025-07-27 13:14:53,871 [wrapper] Test setup, not cleaning
[2025-07-27 15:14:53] 2025-07-27 13:14:53,873 [wrapper] apfmon messages muted
[2025-07-27 15:14:53] 2025-07-27 13:14:53,875 [wrapper] ==== wrapper stdout END ====
[2025-07-27 15:14:53] 2025-07-27 13:14:53,876 [wrapper] ==== wrapper stderr END ====
[2025-07-27 15:14:53]  *** Error codes and diagnostics ***
[2025-07-27 15:14:53]     "exeErrorCode": 0,
[2025-07-27 15:14:53]     "exeErrorDiag": "",
[2025-07-27 15:14:53]     "pilotErrorCode": 0,
[2025-07-27 15:14:53]     "pilotErrorDiag": "",
[2025-07-27 15:14:53]  *** Listing of results directory ***
[2025-07-27 15:14:53] insgesamt 436976
[2025-07-27 15:14:53] -rw-r--r-- 1 boinc boinc    530466 25. Jul 22:16 pilot3.tar.gz
[2025-07-27 15:14:53] -rwx------ 1 boinc boinc     36292 25. Jul 22:26 runpilot2-wrapper.sh
[2025-07-27 15:14:53] -rw-r--r-- 1 boinc boinc      5112 25. Jul 22:26 queuedata.json
[2025-07-27 15:14:53] -rw-r--r-- 1 boinc boinc       100 27. Jul 13:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 15:14:53] -rwxr-xr-x 1 boinc boinc      7986 27. Jul 13:47 run_atlas
[2025-07-27 15:14:53] -rw-r--r-- 1 boinc boinc       105 27. Jul 13:47 job.xml
[2025-07-27 15:14:53] -rw-r--r-- 1 boinc boinc      6722 27. Jul 13:47 init_data.xml
[2025-07-27 15:14:53] -rw-r--r-- 2 boinc boinc 228477393 27. Jul 13:47 EVNT.45743347._001483.pool.root.1
[2025-07-27 15:14:53] drwxrwx--x 2 boinc boinc      4096 27. Jul 13:47 shared
[2025-07-27 15:14:53] -rw-r--r-- 2 boinc boinc    542890 27. Jul 13:47 input.tar.gz
[2025-07-27 15:14:53] -rw-r--r-- 2 boinc boinc     15095 27. Jul 13:47 start_atlas.sh
[2025-07-27 15:14:53] -rw-r--r-- 1 boinc boinc         0 27. Jul 13:47 boinc_lockfile
[2025-07-27 15:14:53] -rw-r--r-- 1 boinc boinc      2562 27. Jul 13:47 pandaJob.out
[2025-07-27 15:14:53] -rw------- 1 boinc boinc    980109 27. Jul 13:47 agis_schedconf.cvmfs.json
[2025-07-27 15:14:53] -rw------- 1 boinc boinc   1593052 27. Jul 13:47 agis_ddmendpoints.agis.ALL.json
[2025-07-27 15:14:53] drwx------ 4 boinc boinc      4096 27. Jul 13:47 pilot3
[2025-07-27 15:14:53] -rw------- 1 boinc boinc 213590792 27. Jul 15:13 HITS.45743349._026703.pool.root.1
[2025-07-27 15:14:53] -rw-r--r-- 1 boinc boinc       529 27. Jul 15:13 boinc_task_state.xml
[2025-07-27 15:14:53] -rw------- 1 boinc boinc      1019 27. Jul 15:14 memory_monitor_summary.json
[2025-07-27 15:14:53] -rw------- 1 boinc boinc    261930 27. Jul 15:14 log.45743349._026703.job.log.tgz.1
[2025-07-27 15:14:53] -rw------- 1 boinc boinc        95 27. Jul 15:14 pilot_heartbeat.json
[2025-07-27 15:14:53] -rw------- 1 boinc boinc      7754 27. Jul 15:14 heartbeat.json
[2025-07-27 15:14:53] -rw-r--r-- 1 boinc boinc      8192 27. Jul 15:14 boinc_mmap_file
[2025-07-27 15:14:53] -rw-r--r-- 1 boinc boinc        27 27. Jul 15:14 wrapper_checkpoint.txt
[2025-07-27 15:14:53] -rw------- 1 boinc boinc       747 27. Jul 15:14 pilotlog.txt
[2025-07-27 15:14:53] -rw------- 1 boinc boinc    499339 27. Jul 15:14 log.45743349._026703.job.log.1
[2025-07-27 15:14:53] -rw------- 1 boinc boinc       357 27. Jul 15:14 output.list
[2025-07-27 15:14:53] -rw-r--r-- 1 boinc boinc       620 27. Jul 15:14 runtime_log
[2025-07-27 15:14:53] -rw------- 1 boinc boinc    778240 27. Jul 15:14 result.tar.gz
[2025-07-27 15:14:53] -rw------- 1 boinc boinc       639 27. Jul 15:14 tgaNDm6Aez7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSNQLDm5PHQKo.diag
[2025-07-27 15:14:53] -rw-r--r-- 1 boinc boinc      8602 27. Jul 15:14 runtime_log.err
[2025-07-27 15:14:53] -rw-r--r-- 1 boinc boinc     21519 27. Jul 15:14 stderr.txt
[2025-07-27 15:14:53] HITS file was successfully produced:
[2025-07-27 15:14:53] -rw------- 1 boinc boinc 213590792 27. Jul 15:13 shared/HITS.pool.root.1
[2025-07-27 15:14:53]  *** Contents of shared directory: ***
[2025-07-27 15:14:53] insgesamt 433028
[2025-07-27 15:14:53] -rw-r--r-- 2 boinc boinc 228477393 27. Jul 13:47 ATLAS.root_0
[2025-07-27 15:14:53] -rw-r--r-- 2 boinc boinc    542890 27. Jul 13:47 input.tar.gz
[2025-07-27 15:14:53] -rw-r--r-- 2 boinc boinc     15095 27. Jul 13:47 start_atlas.sh
[2025-07-27 15:14:53] -rw------- 1 boinc boinc 213590792 27. Jul 15:13 HITS.pool.root.1
[2025-07-27 15:14:53] -rw------- 1 boinc boinc    778240 27. Jul 15:14 result.tar.gz
15:14:55 (2835684): run_atlas exited; CPU time 29903.366235
15:14:55 (2835684): called boinc_finish(0)

</stderr_txt>
]]>

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