Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-25 22:03:51 (1668): Detected: vboxwrapper 26206
2025-07-25 22:03:51 (1668): Detected: BOINC client v8.0.2
2025-07-25 22:03:51 (1668): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-07-25 22:03:51 (1668): Successfully copied 'init_data.xml' to the shared directory.
2025-07-25 22:03:52 (1668): Create VM. (boinc_c90bb9eff74c9a98, slot#4)
2025-07-25 22:03:53 (1668): Setting Memory Size for VM. (4400MB)
2025-07-25 22:03:53 (1668): Setting CPU Count for VM. (4)
2025-07-25 22:03:53 (1668): Setting Chipset Options for VM.
2025-07-25 22:03:53 (1668): Setting Graphics Controller Options for VM.
2025-07-25 22:03:54 (1668): Setting Boot Options for VM.
2025-07-25 22:03:54 (1668): Setting Network Configuration for NAT.
2025-07-25 22:03:54 (1668): Enabling VM Network Access.
2025-07-25 22:03:54 (1668): Disabling USB Support for VM.
2025-07-25 22:03:55 (1668): Disabling COM Port Support for VM.
2025-07-25 22:03:55 (1668): Disabling LPT Port Support for VM.
2025-07-25 22:03:55 (1668): Disabling Audio Support for VM.
2025-07-25 22:03:56 (1668): Disabling Clipboard Support for VM.
2025-07-25 22:03:56 (1668): Disabling Drag and Drop Support for VM.
2025-07-25 22:03:56 (1668): Adding storage controller(s) to VM.
2025-07-25 22:03:56 (1668): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-25 22:03:59 (1668): Adding VirtualBox Guest Additions to VM.
2025-07-25 22:04:00 (1668): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-25 22:04:00 (1668): forwarding host port 65240 to guest port 80
2025-07-25 22:04:00 (1668): Enabling remote desktop for VM.
2025-07-25 22:04:00 (1668): Required extension pack not installed, remote desktop not enabled.
2025-07-25 22:04:00 (1668): Enabling shared directory for VM.
2025-07-25 22:04:01 (1668): Starting VM using VBoxManage interface. (boinc_c90bb9eff74c9a98, slot#4)
2025-07-25 22:04:10 (1668): Successfully started VM. (PID = '9132')
2025-07-25 22:04:10 (1668): Reporting VM Process ID to BOINC.
2025-07-25 22:04:10 (1668): Guest Log: BIOS: VirtualBox 7.0.6
2025-07-25 22:04:10 (1668): Guest Log: CPUID EDX: 0x178bfbff
2025-07-25 22:04:10 (1668): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-25 22:04:10 (1668): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-25 22:04:10 (1668): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-25 22:04:10 (1668): Detected: Web Application Enabled (http://localhost:65240)
2025-07-25 22:04:10 (1668): Preference change detected
2025-07-25 22:04:10 (1668): Setting CPU throttle for VM. (80%)
2025-07-25 22:04:10 (1668): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-25 22:04:12 (1668): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-25 22:04:12 (1668): Guest Log: BIOS: Booting from Hard Disk...
2025-07-25 22:04:15 (1668): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-25 22:04:15 (1668): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-25 22:04:15 (1668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-25 22:04:24 (1668): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-25 22:04:24 (1668): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-25 22:04:30 (1668): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 22:04:50 (1668): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 22:04:52 (1668): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-25 22:04:52 (1668): Guest Log: 00:00:00.000182 main     Log opened 2025-07-25T22:04:31.102937000Z
2025-07-25 22:04:52 (1668): Guest Log: 00:00:00.000401 main     OS Product: Linux
2025-07-25 22:04:52 (1668): Guest Log: 00:00:00.000443 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-25 22:04:52 (1668): Guest Log: 00:00:00.000481 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-25 22:04:52 (1668): Guest Log: 00:00:00.000518 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-25 22:04:52 (1668): Guest Log: 00:00:00.000519 main     Process ID: 1266
2025-07-25 22:04:52 (1668): Guest Log: 00:00:00.000520 main     Package type: LINUX_64BITS_GENERIC
2025-07-25 22:04:52 (1668): Guest Log: 00:00:00.001979 main     5.2.32 r132073 started. Verbose level = 0
2025-07-25 22:04:52 (1668): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-25 22:04:52 (1668): Guest Log: [INFO] Mounting shared directory
2025-07-25 22:04:52 (1668): Guest Log: [INFO] Checking for init_data.xml
2025-07-25 22:04:56 (1668): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-25 22:04:56 (1668): Guest Log: [INFO] Detected branch: prod
2025-07-25 22:04:56 (1668): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-25 22:04:56 (1668): Guest Log: Copying input files
2025-07-25 22:04:58 (1668): Guest Log: Copied input files into RunAtlas.
2025-07-25 22:04:58 (1668): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-25 22:04:58 (1668): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-25 22:04:58 (1668): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-25 22:04:58 (1668): Guest Log: Further information can be found at the LHC@home message board.
2025-07-25 22:05:00 (1668): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 22:05:20 (1668): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 22:05:22 (1668): Guest Log: 00:00:10.004716 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 430 760 994 000ns (GuestNow=1 753 495 501 868 181 000 ns GuestLast=1 753 481 071 107 187 000 ns fSetTimeLastLoop=true )
2025-07-25 22:05:26 (1668): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-25 22:05:26 (1668): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-25 22:05:26 (1668): Guest Log: 2.6.3.0 1544 0 30104 148760 3 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-25 22:05:27 (1668): Guest Log: copied the webapp to /var/www
2025-07-25 22:05:27 (1668): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-25 22:05:27 (1668): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-25 22:05:27 (1668): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-25 22:05:28 (1668): Guest Log:  *** Starting ATLAS job. (PandaID=6745058940 taskID=45743349) ***
2025-07-25 22:06:50 (1668): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 22:07:10 (1668): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 22:07:30 (1668): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 22:07:50 (1668): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 22:08:00 (1668): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 22:08:20 (1668): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 22:08:30 (1668): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 22:08:50 (1668): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 22:10:11 (1668): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 22:10:31 (1668): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 22:12:01 (1668): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 22:12:21 (1668): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 22:12:41 (1668): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 22:13:01 (1668): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 22:16:35 (1668): Guest Log:  *** Job finished ***
2025-07-25 22:16:35 (1668): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-25 22:16:35 (1668): Guest Log: 2025-07-26 02:13:45,648 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-07-25 22:16:35 (1668): Guest Log: 2025-07-26 02:13:46,240 | INFO     | [job] queue monitor thread has finished
2025-07-25 22:16:35 (1668): Guest Log: 2025-07-26 02:13:49,651 | INFO     | [data] queue_monitor thread has finished
2025-07-25 22:16:35 (1668): Guest Log: 2025-07-26 02:13:50,422 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139974688606016)>', '<ExcThread(monitor, started 139974125025024)>']
2025-07-25 22:16:35 (1668): Guest Log: 2025-07-26 02:13:50,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-25 22:16:35 (1668): Guest Log: 2025-07-26 02:13:50,564 | INFO     | [monitor] control thread has ended
2025-07-25 22:16:35 (1668): Guest Log: 2025-07-26 02:13:55,429 | INFO     | all workflow threads have been joined
2025-07-25 22:16:35 (1668): Guest Log: 2025-07-26 02:13:55,429 | INFO     | end of generic workflow (traces error code: 0)
2025-07-25 22:16:36 (1668): Guest Log: 2025-07-26 02:13:55,429 | INFO     | traces error code: 0
2025-07-25 22:16:36 (1668): Guest Log: 2025-07-26 02:13:55,429 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-25 22:16:36 (1668): Guest Log: 2025-07-26 02:13:55,588 [wrapper] ==== pilot stdout END ====
2025-07-25 22:16:36 (1668): Guest Log: 2025-07-26 02:13:55,596 [wrapper] ==== wrapper stdout RESUME ====
2025-07-25 22:16:36 (1668): Guest Log: 2025-07-26 02:13:55,603 [wrapper] pilotpid: 5865
2025-07-25 22:16:36 (1668): Guest Log: 2025-07-26 02:13:55,610 [wrapper] Pilot exit status: 0
2025-07-25 22:16:36 (1668): Guest Log: 2025-07-26 02:13:55,701 [wrapper] pandaids: 6745058940
2025-07-25 22:16:36 (1668): Guest Log: 2025-07-26 02:13:55,743 [wrapper] cleanup supervisor_pilot  5871 5866
2025-07-25 22:16:36 (1668): Guest Log: 2025-07-26 02:13:55,750 [wrapper] Test setup, not cleaning
2025-07-25 22:16:36 (1668): Guest Log: 2025-07-26 02:13:55,758 [wrapper] apfmon messages muted
2025-07-25 22:16:36 (1668): Guest Log: 2025-07-26 02:13:55,765 [wrapper] ==== wrapper stdout END ====
2025-07-25 22:16:36 (1668): Guest Log: 2025-07-26 02:13:55,772 [wrapper] ==== wrapper stderr END ====
2025-07-25 22:16:36 (1668): Guest Log:  *** Error codes and diagnostics ***
2025-07-25 22:16:36 (1668): Guest Log:     "exeErrorCode": 65,
2025-07-25 22:16:36 (1668): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-07-25 22:16:36 (1668): Guest Log:     "pilotErrorCode": 1305,
2025-07-25 22:16:36 (1668): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-07-25 22:16:36 (1668): Guest Log:  *** Listing of results directory ***
2025-07-25 22:16:36 (1668): Guest Log: total 4100
2025-07-25 22:16:36 (1668): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 25 17:06 pilot3.tar.gz
2025-07-25 22:16:36 (1668): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 25 17:21 queuedata.json
2025-07-25 22:16:36 (1668): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 25 17:22 runpilot2-wrapper.sh
2025-07-25 22:16:36 (1668): Guest Log: -rwxr-xr-x. 1 atlas atlas    8821 Jul 26 02:04 init_data.xml
2025-07-25 22:16:36 (1668): Guest Log: -rwxr-xr-x. 1 atlas atlas  542895 Jul 26 02:04 input.tar.gz
2025-07-25 22:16:36 (1668): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 26 02:04 start_atlas.sh
2025-07-25 22:16:36 (1668): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 26 02:04 EVNT.45743347._001383.pool.root.1 -> /data/./ATLAS.root_0
2025-07-25 22:16:36 (1668): Guest Log: -rw-r--r--. 1 atlas atlas    2562 Jul 26 02:05 pandaJob.out
2025-07-25 22:16:36 (1668): Guest Log: -rw-------. 1 atlas atlas  979985 Jul 26 02:05 agis_schedconf.cvmfs.json
2025-07-25 22:16:36 (1668): Guest Log: -rw-------. 1 atlas atlas 1593052 Jul 26 02:05 agis_ddmendpoints.agis.ALL.json
2025-07-25 22:16:36 (1668): Guest Log: drwx------. 4 atlas atlas    4096 Jul 26 02:06 pilot3
2025-07-25 22:16:36 (1668): Guest Log: -rw-------. 1 atlas atlas   47797 Jul 26 02:11 log.45743349._024343.job.log.tgz.1
2025-07-25 22:16:36 (1668): Guest Log: -rw-------. 1 atlas atlas      95 Jul 26 02:13 pilot_heartbeat.json
2025-07-25 22:16:36 (1668): Guest Log: -rw-------. 1 atlas atlas    8059 Jul 26 02:13 heartbeat.json
2025-07-25 22:16:36 (1668): Guest Log: -rw-------. 1 atlas atlas    4540 Jul 26 02:13 pilotlog.txt
2025-07-25 22:16:36 (1668): Guest Log: -rw-------. 1 atlas atlas  151303 Jul 26 02:13 log.45743349._024343.job.log.1
2025-07-25 22:16:36 (1668): Guest Log: -rw-------. 1 atlas atlas     188 Jul 26 02:13 output.list
2025-07-25 22:16:36 (1668): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 26 02:13 runtime_log
2025-07-25 22:16:36 (1668): Guest Log: -rw-------. 1 atlas atlas  215040 Jul 26 02:13 result.tar.gz
2025-07-25 22:16:36 (1668): Guest Log: -rw-r--r--. 1 atlas atlas    8467 Jul 26 02:13 runtime_log.err
2025-07-25 22:16:36 (1668): Guest Log: -rw-------. 1 atlas atlas     651 Jul 26 02:13 N8UMDmxIbz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmLHzKDmbKWmEn.diag
2025-07-25 22:16:36 (1668): Guest Log: Looking for outputfile HITS.45743349._024343.pool.root.1
2025-07-25 22:16:36 (1668): Guest Log: No HITS file was produced
2025-07-25 22:16:36 (1668): Guest Log: Successfully finished the ATLAS job!
2025-07-25 22:16:36 (1668): Guest Log: Copying the results back to the shared directory!
2025-07-25 22:16:36 (1668): Guest Log:  *** Contents of shared directory: ***
2025-07-25 22:16:36 (1668): Guest Log: total 140108
2025-07-25 22:16:36 (1668): Guest Log: -rwxrwxrwx. 1 root root 142676278 Jul 26 02:03 ATLAS.root_0
2025-07-25 22:16:36 (1668): Guest Log: -rwxrwxrwx. 1 root root      8821 Jul 26 02:03 init_data.xml
2025-07-25 22:16:36 (1668): Guest Log: -rwxrwxrwx. 1 root root    542895 Jul 26 02:03 input.tar.gz
2025-07-25 22:16:36 (1668): Guest Log: -rwxrwxrwx. 1 root root    215040 Jul 26  2025 result.tar.gz
2025-07-25 22:16:36 (1668): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 26 02:03 start_atlas.sh
2025-07-25 22:16:36 (1668): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-25 22:16:36 (1668): VM Completion File Detected.
2025-07-25 22:16:36 (1668): Powering off VM.
2025-07-25 22:16:37 (1668): Successfully stopped VM.
2025-07-25 22:16:37 (1668): Deregistering VM. (boinc_c90bb9eff74c9a98, slot#4)
2025-07-25 22:16:37 (1668): Removing network bandwidth throttle group from VM.
2025-07-25 22:16:37 (1668): Removing VM from VirtualBox.
22:16:42 (1668): called boinc_finish(0)

</stderr_txt>
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