Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-26 05:22:53 (4200): Detected: vboxwrapper 26206
2025-07-26 05:22:53 (4200): Detected: BOINC client v8.0.2
2025-07-26 05:22:54 (4200): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-07-26 05:22:55 (4200): Successfully copied 'init_data.xml' to the shared directory.
2025-07-26 05:22:55 (4200): Create VM. (boinc_6282d59afa473872, slot#3)
2025-07-26 05:22:56 (4200): Setting Memory Size for VM. (4400MB)
2025-07-26 05:22:56 (4200): Setting CPU Count for VM. (4)
2025-07-26 05:22:56 (4200): Setting Chipset Options for VM.
2025-07-26 05:22:56 (4200): Setting Graphics Controller Options for VM.
2025-07-26 05:22:57 (4200): Setting Boot Options for VM.
2025-07-26 05:22:57 (4200): Setting Network Configuration for NAT.
2025-07-26 05:22:57 (4200): Enabling VM Network Access.
2025-07-26 05:22:58 (4200): Disabling USB Support for VM.
2025-07-26 05:22:58 (4200): Disabling COM Port Support for VM.
2025-07-26 05:22:58 (4200): Disabling LPT Port Support for VM.
2025-07-26 05:22:58 (4200): Disabling Audio Support for VM.
2025-07-26 05:22:59 (4200): Disabling Clipboard Support for VM.
2025-07-26 05:22:59 (4200): Disabling Drag and Drop Support for VM.
2025-07-26 05:22:59 (4200): Adding storage controller(s) to VM.
2025-07-26 05:22:59 (4200): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-26 05:23:02 (4200): Adding VirtualBox Guest Additions to VM.
2025-07-26 05:23:02 (4200): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-26 05:23:03 (4200): forwarding host port 57939 to guest port 80
2025-07-26 05:23:03 (4200): Enabling remote desktop for VM.
2025-07-26 05:23:03 (4200): Required extension pack not installed, remote desktop not enabled.
2025-07-26 05:23:03 (4200): Enabling shared directory for VM.
2025-07-26 05:23:04 (4200): Starting VM using VBoxManage interface. (boinc_6282d59afa473872, slot#3)
2025-07-26 05:23:11 (4200): Successfully started VM. (PID = '9056')
2025-07-26 05:23:11 (4200): Reporting VM Process ID to BOINC.
2025-07-26 05:23:11 (4200): Guest Log: BIOS: VirtualBox 7.1.10
2025-07-26 05:23:11 (4200): Guest Log: CPUID EDX: 0x178bfbff
2025-07-26 05:23:11 (4200): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-26 05:23:11 (4200): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-26 05:23:11 (4200): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-26 05:23:11 (4200): Detected: Web Application Enabled (http://localhost:57939)
2025-07-26 05:23:11 (4200): Preference change detected
2025-07-26 05:23:11 (4200): Setting CPU throttle for VM. (100%)
2025-07-26 05:23:11 (4200): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 05:23:13 (4200): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-26 05:23:13 (4200): Guest Log: BIOS: Booting from Hard Disk...
2025-07-26 05:23:19 (4200): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-26 05:23:19 (4200): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-26 05:23:19 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-26 05:23:27 (4200): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-26 05:23:27 (4200): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-26 05:23:34 (4200): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-26 05:23:34 (4200): Guest Log: 00:00:00.000193 main     Log opened 2025-07-26T05:23:33.392772000Z
2025-07-26 05:23:34 (4200): Guest Log: 00:00:00.000381 main     OS Product: Linux
2025-07-26 05:23:34 (4200): Guest Log: 00:00:00.000443 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-26 05:23:34 (4200): Guest Log: 00:00:00.000503 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-26 05:23:34 (4200): Guest Log: 00:00:00.000625 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-26 05:23:34 (4200): Guest Log: 00:00:00.000627 main     Process ID: 1272
2025-07-26 05:23:34 (4200): Guest Log: 00:00:00.000628 main     Package type: LINUX_64BITS_GENERIC
2025-07-26 05:23:34 (4200): Guest Log: 00:00:00.002054 main     5.2.32 r132073 started. Verbose level = 0
2025-07-26 05:23:42 (4200): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-26 05:23:42 (4200): Guest Log: [INFO] Mounting shared directory
2025-07-26 05:23:42 (4200): Guest Log: [INFO] Checking for init_data.xml
2025-07-26 05:23:44 (4200): Guest Log: 00:00:10.005022 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 062 310 000ns (GuestNow=1 753 500 224 334 617 000 ns GuestLast=1 753 507 413 396 927 000 ns fSetTimeLastLoop=true )
2025-07-26 05:23:52 (4200): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-26 05:23:52 (4200): Guest Log: [INFO] Detected branch: prod
2025-07-26 05:23:52 (4200): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-26 05:23:52 (4200): Guest Log: Copying input files
2025-07-26 05:23:54 (4200): Guest Log: Copied input files into RunAtlas.
2025-07-26 05:23:54 (4200): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-26 05:23:54 (4200): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-26 05:23:54 (4200): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-26 05:23:54 (4200): Guest Log: Further information can be found at the LHC@home message board.
2025-07-26 05:24:10 (4200): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-26 05:24:10 (4200): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-26 05:24:10 (4200): Guest Log: 2.6.3.0 1556 0 32160 148763 3 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-26 05:24:11 (4200): Guest Log: copied the webapp to /var/www
2025-07-26 05:24:11 (4200): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-26 05:24:11 (4200): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-26 05:24:12 (4200): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-26 05:24:12 (4200): Guest Log:  *** Starting ATLAS job. (PandaID=6745060862 taskID=45743349) ***
2025-07-26 07:04:30 (4200): Status Report: Elapsed Time: '6000.087652'
2025-07-26 07:04:30 (4200): Status Report: CPU Time: '22352.046875'
2025-07-26 08:46:27 (4200): Status Report: Elapsed Time: '12000.922817'
2025-07-26 08:46:28 (4200): Status Report: CPU Time: '46677.156250'
2025-07-26 10:28:18 (4200): Status Report: Elapsed Time: '18001.670641'
2025-07-26 10:28:18 (4200): Status Report: CPU Time: '71001.296875'
2025-07-26 10:34:31 (4200): Guest Log:  *** Job finished ***
2025-07-26 10:34:31 (4200): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:12,751 | INFO     | all workflow threads have been joined
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:12,752 | INFO     | end of generic workflow (traces error code: 0)
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:12,752 | INFO     | traces error code: 0
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:12,753 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,411 | INFO     | PID=5878 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,411 | INFO     | found 0 job(s) in 20 queues
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,412 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,412 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,412 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,412 | INFO     | [monitor] control thread has ended
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,526 [wrapper] ==== pilot stdout END ====
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,533 [wrapper] ==== wrapper stdout RESUME ====
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,540 [wrapper] pilotpid: 5878
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,549 [wrapper] Pilot exit status: 0
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,630 [wrapper] pandaids: 6745060862
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,685 [wrapper] cleanup supervisor_pilot 18959 5879
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,693 [wrapper] Test setup, not cleaning
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,699 [wrapper] apfmon messages muted
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,706 [wrapper] ==== wrapper stdout END ====
2025-07-26 10:34:31 (4200): Guest Log: 2025-07-26 08:34:29,714 [wrapper] ==== wrapper stderr END ====
2025-07-26 10:34:31 (4200): Guest Log:  *** Error codes and diagnostics ***
2025-07-26 10:34:31 (4200): Guest Log:     "exeErrorCode": 0,
2025-07-26 10:34:31 (4200): Guest Log:     "exeErrorDiag": "",
2025-07-26 10:34:31 (4200): Guest Log:     "pilotErrorCode": 0,
2025-07-26 10:34:31 (4200): Guest Log:     "pilotErrorDiag": "",
2025-07-26 10:34:31 (4200): Guest Log:  *** Listing of results directory ***
2025-07-26 10:34:31 (4200): Guest Log: total 216360
2025-07-26 10:34:31 (4200): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 25 19:17 pilot3.tar.gz
2025-07-26 10:34:31 (4200): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 25 19:28 queuedata.json
2025-07-26 10:34:31 (4200): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 25 19:29 runpilot2-wrapper.sh
2025-07-26 10:34:31 (4200): Guest Log: -rwxr-xr-x. 1 atlas atlas      7175 Jul 26 03:23 init_data.xml
2025-07-26 10:34:31 (4200): Guest Log: -rwxr-xr-x. 1 atlas atlas    542891 Jul 26 03:23 input.tar.gz
2025-07-26 10:34:31 (4200): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 26 03:23 start_atlas.sh
2025-07-26 10:34:31 (4200): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 26 03:23 EVNT.45743347._001456.pool.root.1 -> /data/./ATLAS.root_0
2025-07-26 10:34:31 (4200): Guest Log: -rw-r--r--. 1 atlas atlas      2562 Jul 26 03:24 pandaJob.out
2025-07-26 10:34:31 (4200): Guest Log: -rw-------. 1 atlas atlas    980001 Jul 26 03:25 agis_schedconf.cvmfs.json
2025-07-26 10:34:31 (4200): Guest Log: drwx------. 4 atlas atlas      4096 Jul 26 03:25 pilot3
2025-07-26 10:34:31 (4200): Guest Log: -rw-------. 1 atlas atlas 213953074 Jul 26 08:32 HITS.45743349._026044.pool.root.1
2025-07-26 10:34:31 (4200): Guest Log: -rw-------. 1 atlas atlas      1040 Jul 26 08:33 memory_monitor_summary.json
2025-07-26 10:34:31 (4200): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 26 08:33 agis_ddmendpoints.agis.ALL.json
2025-07-26 10:34:31 (4200): Guest Log: -rw-------. 1 atlas atlas    370179 Jul 26 08:33 log.45743349._026044.job.log.tgz.1
2025-07-26 10:34:31 (4200): Guest Log: -rw-------. 1 atlas atlas        95 Jul 26 08:33 pilot_heartbeat.json
2025-07-26 10:34:31 (4200): Guest Log: -rw-------. 1 atlas atlas      7814 Jul 26 08:33 heartbeat.json
2025-07-26 10:34:31 (4200): Guest Log: -rw-------. 1 atlas atlas       744 Jul 26 08:34 pilotlog.txt
2025-07-26 10:34:31 (4200): Guest Log: -rw-------. 1 atlas atlas   1525550 Jul 26 08:34 log.45743349._026044.job.log.1
2025-07-26 10:34:31 (4200): Guest Log: -rw-------. 1 atlas atlas       357 Jul 26 08:34 output.list
2025-07-26 10:34:31 (4200): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 26 08:34 runtime_log
2025-07-26 10:34:31 (4200): Guest Log: -rw-------. 1 atlas atlas   1914880 Jul 26 08:34 result.tar.gz
2025-07-26 10:34:31 (4200): Guest Log: -rw-r--r--. 1 atlas atlas      8590 Jul 26 08:34 runtime_log.err
2025-07-26 10:34:31 (4200): Guest Log: -rw-------. 1 atlas atlas       659 Jul 26 08:34 Ap7MDmzHdz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHHQLDmre7Qym.diag
2025-07-26 10:34:31 (4200): Guest Log: Looking for outputfile HITS.45743349._026044.pool.root.1
2025-07-26 10:34:31 (4200): Guest Log: HITS file was successfully produced
2025-07-26 10:34:31 (4200): Guest Log: -rw-------. 1 atlas atlas 213953074 Jul 26 08:32 /home/atlas/RunAtlas/HITS.45743349._026044.pool.root.1
2025-07-26 10:34:33 (4200): Guest Log: Successfully finished the ATLAS job!
2025-07-26 10:34:33 (4200): Guest Log: Copying the results back to the shared directory!
2025-07-26 10:34:33 (4200): Guest Log:  *** Contents of shared directory: ***
2025-07-26 10:34:33 (4200): Guest Log: total 439180
2025-07-26 10:34:33 (4200): Guest Log: -rwxrwxrwx. 1 root root 233275529 Jul 26 03:22 ATLAS.root_0
2025-07-26 10:34:33 (4200): Guest Log: -rwxrwxrwx. 1 root root 213953074 Jul 26 08:34 HITS.pool.root.1
2025-07-26 10:34:33 (4200): Guest Log: -rwxrwxrwx. 1 root root      7175 Jul 26 03:22 init_data.xml
2025-07-26 10:34:33 (4200): Guest Log: -rwxrwxrwx. 1 root root    542891 Jul 26 01:26 input.tar.gz
2025-07-26 10:34:33 (4200): Guest Log: -rwxrwxrwx. 1 root root   1914880 Jul 26 08:34 result.tar.gz
2025-07-26 10:34:33 (4200): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 26 01:26 start_atlas.sh
2025-07-26 10:34:33 (4200): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-26 10:34:33 (4200): VM Completion File Detected.
2025-07-26 10:34:33 (4200): Powering off VM.
2025-07-26 10:34:34 (4200): Successfully stopped VM.
2025-07-26 10:34:34 (4200): Deregistering VM. (boinc_6282d59afa473872, slot#3)
2025-07-26 10:34:34 (4200): Removing network bandwidth throttle group from VM.
2025-07-26 10:34:34 (4200): Removing VM from VirtualBox.
10:34:40 (4200): called boinc_finish(0)

</stderr_txt>
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