Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:42:00 (3279973): wrapper (7.7.26015): starting
22:42:00 (3279973): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 22:42:00] Arguments: --nthreads 12
[2025-07-25 22:42:00] Threads: 12
[2025-07-25 22:42:00] Checking for CVMFS
[2025-07-25 22:42:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 22:42:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 22:42:01] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 22:42:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 22:42:01] 2.13.0.0 842134 16338 353796 148761 2 360 27398047 32935937 13143 16776704 0 37892479 99.677 69686429 33041 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 22:42:01] CVMFS is ok
[2025-07-25 22:42:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 22:42:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 22:42:01] Further information can be found at the LHC@home message board.
[2025-07-25 22:42:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 22:42:01] Checking for apptainer binary...
[2025-07-25 22:42:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 22:42:01] Running /usr/bin/apptainer --version
[2025-07-25 22:42:01] apptainer version 1.4.1-1.el9
[2025-07-25 22:42:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 22:42:01] c6-5-37-2.aglt2.org
[2025-07-25 22:42:01] apptainer works
[2025-07-25 22:42:01] Set ATHENA_PROC_NUMBER=12
[2025-07-25 22:42:01] Set ATHENA_CORE_NUMBER=12
[2025-07-25 22:42:01] Starting ATLAS job with PandaID=6745060874
[2025-07-25 22:42:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 00:11:20]  *** The last 200 lines of the pilot log: ***
[2025-07-26 00:11:20]  lfn=log.45743349._026056.job.log.tgz.1
[2025-07-26 00:11:20]  mtime=0
[2025-07-26 00:11:20]  protocol_id=None
[2025-07-26 00:11:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 00:11:20]  replicas=None
[2025-07-26 00:11:20]  scope=mc23_13p6TeV
[2025-07-26 00:11:20]  status=None
[2025-07-26 00:11:20]  status_code=0
[2025-07-26 00:11:20]  storage_token=
[2025-07-26 00:11:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745060874/log.45743349._026056.job.log.tgz.1
[2025-07-26 00:11:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/78/log.45743349._026056.job.log.tgz.1
[2025-07-26 00:11:20]  workdir=None
[2025-07-26 00:11:20] ]
[2025-07-26 00:11:20] 2025-07-26 04:10:38,781 | INFO     | transferring file log.45743349._026056.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745060874/log.45743349._026056.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 00:11:20] 2025-07-26 04:10:38,781 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745060874/log.45743349._026056.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._026056.job
[2025-07-26 00:11:20] 2025-07-26 04:10:38,804 | INFO     | adding to output.list: log.45743349._026056.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/78/log.45743349._026056.job.log.tg
[2025-07-26 00:11:20] 2025-07-26 04:10:38,805 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 00:11:20] 2025-07-26 04:10:38,805 | INFO     | summary of transferred files:
[2025-07-26 00:11:20] 2025-07-26 04:10:38,805 | INFO     |  -- lfn=log.45743349._026056.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 00:11:20] 2025-07-26 04:10:38,805 | INFO     | stage-out finished correctly
[2025-07-26 00:11:20] 2025-07-26 04:10:40,918 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 00:11:20] 2025-07-26 04:10:41,133 | INFO     | monitor loop #374: job 0:6745060874 is in state 'finished'
[2025-07-26 00:11:20] 2025-07-26 04:10:41,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 00:11:20] 2025-07-26 04:10:41,138 | INFO     | job 6745060874 has state=finished
[2025-07-26 00:11:20] 2025-07-26 04:10:41,138 | INFO     | preparing for final server update for job 6745060874 in state='finished'
[2025-07-26 00:11:20] 2025-07-26 04:10:41,139 | INFO     | this job has now completed (state=finished)
[2025-07-26 00:11:20] 2025-07-26 04:10:41,139 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 00:11:20] 2025-07-26 04:10:41,139 | INFO     | log transfer has been attempted: DONE
[2025-07-26 00:11:20] 2025-07-26 04:10:41,139 | INFO     | job 6745060874 has finished - writing final server update
[2025-07-26 00:11:20] 2025-07-26 04:10:41,139 | INFO     | total number of processed events: 400 (read)
[2025-07-26 00:11:20] 2025-07-26 04:10:41,140 | INFO     | executing command: lscpu
[2025-07-26 00:11:20] 2025-07-26 04:10:41,215 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 00:11:20] 2025-07-26 04:10:43,637 | INFO     | monitor loop #375: job 0:6745060874 is in state 'finished'
[2025-07-26 00:11:20] 2025-07-26 04:10:43,637 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 00:11:20] 2025-07-26 04:10:46,140 | INFO     | monitor loop #376: job 0:6745060874 is in state 'finished'
[2025-07-26 00:11:20] 2025-07-26 04:10:46,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 00:11:20] 2025-07-26 04:10:47,496 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 00:11:20] 2025-07-26 04:10:47,507 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2873.424607142857
[2025-07-26 00:11:20] 2025-07-26 04:10:47,519 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745060874/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 00:11:20] 2025-07-26 04:10:47,520 | INFO     | extracted standard info from prmon json
[2025-07-26 00:11:20] 2025-07-26 04:10:47,520 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 00:11:20] 2025-07-26 04:10:47,521 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 00:11:20] 2025-07-26 04:10:47,521 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 00:11:20] 2025-07-26 04:10:47,521 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 00:11:20] 2025-07-26 04:10:47,523 | INFO     | fitting pss+swap vs Time
[2025-07-26 00:11:20] 2025-07-26 04:10:47,524 | INFO     | sum of square deviations: 158766183.55000016
[2025-07-26 00:11:20] 2025-07-26 04:10:47,524 | INFO     | sum of deviations: -15053615632.25
[2025-07-26 00:11:20] 2025-07-26 04:10:47,524 | INFO     | mean x: 1753500484.925
[2025-07-26 00:11:20] 2025-07-26 04:10:47,524 | INFO     | mean y: 2528031.125
[2025-07-26 00:11:20] 2025-07-26 04:10:47,524 | INFO     | -- intersect: 166262884744.37866
[2025-07-26 00:11:20] 2025-07-26 04:10:47,524 | INFO     | intersect: 166262884744.37866
[2025-07-26 00:11:20] 2025-07-26 04:10:47,525 | INFO     | chi2: 0.17898571838712302
[2025-07-26 00:11:20] 2025-07-26 04:10:47,525 | INFO     | -- intersect: 166262884744.37866
[2025-07-26 00:11:20] 2025-07-26 04:10:47,525 | INFO     | current memory leak: -94.82 B/s (using 80 data points, chi2=0.18)
[2025-07-26 00:11:20] 2025-07-26 04:10:47,525 | INFO     | could have reported an average CPU frequency of 2738 MHz (6 samples)
[2025-07-26 00:11:20] 2025-07-26 04:10:47,526 | INFO     | ..............................
[2025-07-26 00:11:20] 2025-07-26 04:10:47,526 | INFO     | . Timing measurements:
[2025-07-26 00:11:20] 2025-07-26 04:10:47,526 | INFO     | . get job = 0 s
[2025-07-26 00:11:20] 2025-07-26 04:10:47,526 | INFO     | . initial setup = 2 s
[2025-07-26 00:11:20] 2025-07-26 04:10:47,526 | INFO     | . payload setup = 9 s
[2025-07-26 00:11:20] 2025-07-26 04:10:47,526 | INFO     | . stage-in = 0 s
[2025-07-26 00:11:20] 2025-07-26 04:10:47,526 | INFO     | . payload execution = 5271 s
[2025-07-26 00:11:20] 2025-07-26 04:10:47,526 | INFO     | . stage-out = 0 s
[2025-07-26 00:11:20] 2025-07-26 04:10:47,526 | INFO     | . log creation = 0 s
[2025-07-26 00:11:20] 2025-07-26 04:10:47,526 | INFO     | ..............................
[2025-07-26 00:11:20] 2025-07-26 04:10:47,639 | INFO     | 
[2025-07-26 00:11:20] 2025-07-26 04:10:47,640 | INFO     | job summary report
[2025-07-26 00:11:20] 2025-07-26 04:10:47,640 | INFO     | --------------------------------------------------
[2025-07-26 00:11:20] 2025-07-26 04:10:47,640 | INFO     | PanDA job id: 6745060874
[2025-07-26 00:11:20] 2025-07-26 04:10:47,640 | INFO     | task id: 45743349
[2025-07-26 00:11:20] 2025-07-26 04:10:47,640 | INFO     | errors: (none)
[2025-07-26 00:11:20] 2025-07-26 04:10:47,640 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 00:11:20] 2025-07-26 04:10:47,640 | INFO     | pilot state: finished 
[2025-07-26 00:11:20] 2025-07-26 04:10:47,640 | INFO     | transexitcode: 0
[2025-07-26 00:11:20] 2025-07-26 04:10:47,640 | INFO     | exeerrorcode: 0
[2025-07-26 00:11:20] 2025-07-26 04:10:47,640 | INFO     | exeerrordiag: 
[2025-07-26 00:11:20] 2025-07-26 04:10:47,640 | INFO     | exitcode: 0
[2025-07-26 00:11:20] 2025-07-26 04:10:47,641 | INFO     | exitmsg: OK
[2025-07-26 00:11:20] 2025-07-26 04:10:47,641 | INFO     | cpuconsumptiontime: 45534 s
[2025-07-26 00:11:20] 2025-07-26 04:10:47,641 | INFO     | nevents: 400
[2025-07-26 00:11:20] 2025-07-26 04:10:47,641 | INFO     | neventsw: 0
[2025-07-26 00:11:20] 2025-07-26 04:10:47,641 | INFO     | pid: 3291558
[2025-07-26 00:11:20] 2025-07-26 04:10:47,641 | INFO     | pgrp: 3291558
[2025-07-26 00:11:20] 2025-07-26 04:10:47,641 | INFO     | corecount: 12
[2025-07-26 00:11:20] 2025-07-26 04:10:47,641 | INFO     | event service: False
[2025-07-26 00:11:20] 2025-07-26 04:10:47,641 | INFO     | sizes: {0: 2397304, 1: 2397503, 7: 2397765, 11: 2397793, 5285: 2424247, 5286: 2433245, 5288: 2433429, 5295: 2433623}
[2025-07-26 00:11:20] 2025-07-26 04:10:47,641 | INFO     | --------------------------------------------------
[2025-07-26 00:11:20] 2025-07-26 04:10:47,641 | INFO     | 
[2025-07-26 00:11:20] 2025-07-26 04:10:47,641 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 00:11:20] 2025-07-26 04:10:47,665 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,666 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,666 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,666 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,666 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,666 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,666 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,666 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,666 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,666 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,666 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,667 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,667 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,667 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,667 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,667 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,667 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,667 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 00:11:20] 2025-07-26 04:10:47,667 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,667 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 00:11:20] 2025-07-26 04:10:47,667 | INFO     | job 6745060874 has completed (purged errors)
[2025-07-26 00:11:20] 2025-07-26 04:10:47,667 | INFO     | overall cleanup function is called
[2025-07-26 00:11:20] 2025-07-26 04:10:48,675 | INFO     | --- collectZombieJob: --- 10, [3291558]
[2025-07-26 00:11:20] 2025-07-26 04:10:48,675 | INFO     | zombie collector waiting for pid 3291558
[2025-07-26 00:11:20] 2025-07-26 04:10:48,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 00:11:20] 2025-07-26 04:10:48,676 | INFO     | collected zombie processes
[2025-07-26 00:11:20] 2025-07-26 04:10:48,676 | INFO     | will attempt to kill all subprocesses of pid=3291558
[2025-07-26 00:11:20] 2025-07-26 04:10:48,910 | INFO     | process IDs to be killed: [3291558] (in reverse order)
[2025-07-26 00:11:20] 2025-07-26 04:10:49,008 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 00:11:20] 2025-07-26 04:10:49,009 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 00:11:20] 2025-07-26 04:10:49,022 | INFO     | did not find any defunct processes belonging to 3291558
[2025-07-26 00:11:20] 2025-07-26 04:10:49,034 | INFO     | did not find any defunct processes belonging to 3291558
[2025-07-26 00:11:20] 2025-07-26 04:10:49,035 | INFO     | ready for new job
[2025-07-26 00:11:20] 2025-07-26 04:10:49,035 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 00:11:20] 2025-07-26 04:10:49,037 | INFO     | ***************************************
[2025-07-26 00:11:20] 2025-07-26 04:10:49,037 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 00:11:20] 2025-07-26 04:10:49,037 | INFO     | ***************************************
[2025-07-26 00:11:20] 2025-07-26 04:10:49,037 | INFO     | 
[2025-07-26 00:11:20] 2025-07-26 04:10:49,052 | INFO     | architecture information:
[2025-07-26 00:11:20] 2025-07-26 04:10:49,053 | INFO     | executing command: cat /etc/os-release
[2025-07-26 00:11:20] 2025-07-26 04:10:49,080 | INFO     | cat /etc/os-release:
[2025-07-26 00:11:20] NAME="CentOS Linux"
[2025-07-26 00:11:20] VERSION="7 (Core)"
[2025-07-26 00:11:20] ID="centos"
[2025-07-26 00:11:20] ID_LIKE="rhel fedora"
[2025-07-26 00:11:20] VERSION_ID="7"
[2025-07-26 00:11:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 00:11:20] ANSI_COLOR="0;31"
[2025-07-26 00:11:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 00:11:20] HOME_URL="https://www.centos.org/"
[2025-07-26 00:11:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 00:11:20] 
[2025-07-26 00:11:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 00:11:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 00:11:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 00:11:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 00:11:20] 
[2025-07-26 00:11:20] 2025-07-26 04:10:49,081 | INFO     | ***************************************
[2025-07-26 00:11:20] 2025-07-26 04:10:49,585 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 00:11:20] 2025-07-26 04:10:49,607 | INFO     | sufficient remaining disk space (76284952576 B)
[2025-07-26 00:11:20] 2025-07-26 04:10:49,607 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 00:11:20] 2025-07-26 04:10:49,608 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 00:11:20] 2025-07-26 04:10:49,608 | INFO     | update_server=False
[2025-07-26 00:11:20] 2025-07-26 04:10:49,608 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 00:11:20] 2025-07-26 04:10:49,609 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 00:11:20] 2025-07-26 04:10:49,609 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 00:11:20] 2025-07-26 04:10:49,649 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 00:11:20] 2025-07-26 04:10:49,649 | INFO     | aborting loop
[2025-07-26 00:11:20] 2025-07-26 04:10:49,970 | INFO     | all payload control threads have been joined
[2025-07-26 00:11:20] 2025-07-26 04:10:50,204 | INFO     | all job control threads have been joined
[2025-07-26 00:11:20] 2025-07-26 04:10:50,373 | INFO     | all data control threads have been joined
[2025-07-26 00:11:20] 2025-07-26 04:10:50,614 | INFO     | [job] retrieve thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:50,614 | INFO     | [job] queue monitor thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:50,655 | INFO     | [job] job monitor thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:50,698 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:50,975 | INFO     | [payload] control thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:51,209 | INFO     | [job] control thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:51,318 | INFO     | [data] copytool_in thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:51,356 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:51,379 | INFO     | [data] control thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:51,422 | INFO     | [job] validate thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:51,506 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 00:11:20] 2025-07-26 04:10:51,614 | INFO     | [data] copytool_out thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:51,627 | INFO     | [payload] validate_post thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:51,807 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:52,043 | INFO     | [payload] failed_post thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:10:55,514 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:11:00,599 | INFO     | job.realtimelogging is not enabled
[2025-07-26 00:11:20] 2025-07-26 04:11:01,607 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 00:11:20] 2025-07-26 04:11:02,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139806373746496)>', '<ExcThread(monitor, started 139805748885248)>']
[2025-07-26 00:11:20] 2025-07-26 04:11:07,358 | INFO     | all workflow threads have been joined
[2025-07-26 00:11:20] 2025-07-26 04:11:07,359 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 00:11:20] 2025-07-26 04:11:07,359 | INFO     | traces error code: 0
[2025-07-26 00:11:20] 2025-07-26 04:11:07,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 00:11:20] 2025-07-26 04:11:20,320 | INFO     | PID=3283571 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 00:11:20] 2025-07-26 04:11:20,321 | INFO     | .. there are 15 such processes running
[2025-07-26 00:11:20] 2025-07-26 04:11:20,321 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 00:11:20] 2025-07-26 04:11:20,321 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 00:11:20] 2025-07-26 04:11:20,321 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 00:11:20] 2025-07-26 04:11:20,322 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 00:11:20] 2025-07-26 04:11:20,322 | INFO     | [monitor] control thread has ended
[2025-07-26 00:11:20] 2025-07-26 04:11:20,498 [wrapper] ==== pilot stdout END ====
[2025-07-26 00:11:20] 2025-07-26 04:11:20,505 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 00:11:20] 2025-07-26 04:11:20,508 [wrapper] pilotpid: 3283571
[2025-07-26 00:11:20] 2025-07-26 04:11:20,513 [wrapper] Pilot exit status: 0
[2025-07-26 00:11:20] 2025-07-26 04:11:20,533 [wrapper] pandaids: 6745060874
[2025-07-26 00:11:20] 2025-07-26 04:11:20,609 [wrapper] cleanup supervisor_pilot 3406195 3283572
[2025-07-26 00:11:20] 2025-07-26 04:11:20,613 [wrapper] Test setup, not cleaning
[2025-07-26 00:11:20] 2025-07-26 04:11:20,618 [wrapper] apfmon messages muted
[2025-07-26 00:11:20] 2025-07-26 04:11:20,621 [wrapper] ==== wrapper stdout END ====
[2025-07-26 00:11:20] 2025-07-26 04:11:20,626 [wrapper] ==== wrapper stderr END ====
[2025-07-26 00:11:20]  *** Error codes and diagnostics ***
[2025-07-26 00:11:20]     "exeErrorCode": 0,
[2025-07-26 00:11:20]     "exeErrorDiag": "",
[2025-07-26 00:11:20]     "pilotErrorCode": 0,
[2025-07-26 00:11:20]     "pilotErrorDiag": "",
[2025-07-26 00:11:20]  *** Listing of results directory ***
[2025-07-26 00:11:20] total 435328
[2025-07-26 00:11:20] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 15:17 pilot3.tar.gz
[2025-07-26 00:11:20] -rwx------. 1 boincer umatlas     36292 Jul 25 15:34 runpilot2-wrapper.sh
[2025-07-26 00:11:20] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 15:34 queuedata.json
[2025-07-26 00:11:20] -rw-r--r--. 1 boincer umatlas       100 Jul 25 22:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 00:11:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 22:42 run_atlas
[2025-07-26 00:11:20] -rw-r--r--. 1 boincer umatlas       105 Jul 25 22:42 job.xml
[2025-07-26 00:11:20] -rw-r--r--. 2 boincer umatlas 229678323 Jul 25 22:42 EVNT.45743347._001457.pool.root.1
[2025-07-26 00:11:20] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 22:42 start_atlas.sh
[2025-07-26 00:11:20] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 22:42 shared
[2025-07-26 00:11:20] -rw-r--r--. 2 boincer umatlas    542899 Jul 25 22:42 input.tar.gz
[2025-07-26 00:11:20] -rw-r--r--. 1 boincer umatlas         0 Jul 25 22:42 boinc_lockfile
[2025-07-26 00:11:20] -rw-r--r--. 1 boincer umatlas      2563 Jul 25 22:42 pandaJob.out
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas    979977 Jul 25 22:42 agis_schedconf.cvmfs.json
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas   1593052 Jul 25 22:42 agis_ddmendpoints.agis.ALL.json
[2025-07-26 00:11:20] drwx------. 4 boincer umatlas      4096 Jul 25 22:42 pilot3
[2025-07-26 00:11:20] -rw-r--r--. 1 boincer umatlas      6843 Jul 26 00:09 init_data.xml
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas 210488818 Jul 26 00:10 HITS.45743349._026056.pool.root.1
[2025-07-26 00:11:20] -rw-r--r--. 1 boincer umatlas       530 Jul 26 00:10 boinc_task_state.xml
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas      1036 Jul 26 00:10 memory_monitor_summary.json
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas    363165 Jul 26 00:10 log.45743349._026056.job.log.tgz.1
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas        95 Jul 26 00:10 pilot_heartbeat.json
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas      7821 Jul 26 00:10 heartbeat.json
[2025-07-26 00:11:20] -rw-r--r--. 1 boincer umatlas        27 Jul 26 00:11 wrapper_checkpoint.txt
[2025-07-26 00:11:20] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 00:11 boinc_mmap_file
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas       823 Jul 26 00:11 pilotlog.txt
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas    504016 Jul 26 00:11 log.45743349._026056.job.log.1
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas       357 Jul 26 00:11 output.list
[2025-07-26 00:11:20] -rw-r--r--. 1 boincer umatlas       620 Jul 26 00:11 runtime_log
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas    890880 Jul 26 00:11 result.tar.gz
[2025-07-26 00:11:20] -rw-r--r--. 1 boincer umatlas      8667 Jul 26 00:11 runtime_log.err
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas       653 Jul 26 00:11 JVHODm3Mdz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmBVzKDm6lbECo.diag
[2025-07-26 00:11:20] -rw-r--r--. 1 boincer umatlas     21679 Jul 26 00:11 stderr.txt
[2025-07-26 00:11:20] HITS file was successfully produced:
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas 210488818 Jul 26 00:10 shared/HITS.pool.root.1
[2025-07-26 00:11:20]  *** Contents of shared directory: ***
[2025-07-26 00:11:20] total 431272
[2025-07-26 00:11:20] -rw-r--r--. 2 boincer umatlas 229678323 Jul 25 22:42 ATLAS.root_0
[2025-07-26 00:11:20] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 22:42 start_atlas.sh
[2025-07-26 00:11:20] -rw-r--r--. 2 boincer umatlas    542899 Jul 25 22:42 input.tar.gz
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas 210488818 Jul 26 00:10 HITS.pool.root.1
[2025-07-26 00:11:20] -rw-------. 1 boincer umatlas    890880 Jul 26 00:11 result.tar.gz
00:11:22 (3279973): run_atlas exited; CPU time 45612.659781
00:11:22 (3279973): called boinc_finish(0)

</stderr_txt>
]]>

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