Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-26 10:10:04 (15040): Detected: vboxwrapper 26206
2025-07-26 10:10:04 (15040): Detected: BOINC client v8.0.2
2025-07-26 10:10:05 (15040): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-07-26 10:10:05 (15040): Successfully copied 'init_data.xml' to the shared directory.
2025-07-26 10:10:05 (15040): Create VM. (boinc_4fdfda8f07533f54, slot#0)
2025-07-26 10:10:06 (15040): Setting Memory Size for VM. (4800MB)
2025-07-26 10:10:06 (15040): Setting CPU Count for VM. (8)
2025-07-26 10:10:07 (15040): Setting Chipset Options for VM.
2025-07-26 10:10:07 (15040): Setting Graphics Controller Options for VM.
2025-07-26 10:10:07 (15040): Setting Boot Options for VM.
2025-07-26 10:10:07 (15040): Setting Network Configuration for NAT.
2025-07-26 10:10:08 (15040): Enabling VM Network Access.
2025-07-26 10:10:08 (15040): Disabling USB Support for VM.
2025-07-26 10:10:08 (15040): Disabling COM Port Support for VM.
2025-07-26 10:10:08 (15040): Disabling LPT Port Support for VM.
2025-07-26 10:10:09 (15040): Disabling Audio Support for VM.
2025-07-26 10:10:09 (15040): Disabling Clipboard Support for VM.
2025-07-26 10:10:09 (15040): Disabling Drag and Drop Support for VM.
2025-07-26 10:10:09 (15040): Adding storage controller(s) to VM.
2025-07-26 10:10:10 (15040): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-26 10:10:13 (15040): Adding VirtualBox Guest Additions to VM.
2025-07-26 10:10:13 (15040): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-26 10:10:13 (15040): forwarding host port 63890 to guest port 80
2025-07-26 10:10:13 (15040): Enabling remote desktop for VM.
2025-07-26 10:10:14 (15040): Enabling shared directory for VM.
2025-07-26 10:10:15 (15040): Starting VM using VBoxManage interface. (boinc_4fdfda8f07533f54, slot#0)
2025-07-26 10:10:23 (15040): Successfully started VM. (PID = '4020')
2025-07-26 10:10:23 (15040): Reporting VM Process ID to BOINC.
2025-07-26 10:10:23 (15040): Guest Log: BIOS: VirtualBox 7.1.10
2025-07-26 10:10:23 (15040): Guest Log: CPUID EDX: 0x178bfbff
2025-07-26 10:10:23 (15040): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-26 10:10:23 (15040): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-26 10:10:23 (15040): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-26 10:10:23 (15040): Detected: Web Application Enabled (http://localhost:63890)
2025-07-26 10:10:23 (15040): Detected: Remote Desktop Enabled (localhost:63893)
2025-07-26 10:10:23 (15040): Preference change detected
2025-07-26 10:10:23 (15040): Setting CPU throttle for VM. (30%)
2025-07-26 10:10:23 (15040): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 30 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 10:10:25 (15040): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-26 10:10:25 (15040): Guest Log: BIOS: Booting from Hard Disk...
2025-07-26 10:10:33 (15040): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-26 10:10:33 (15040): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-26 10:10:33 (15040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-26 10:10:50 (15040): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-26 10:10:50 (15040): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-26 10:11:23 (15040): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-26 10:11:23 (15040): Guest Log: 00:00:00.000220 main     Log opened 2025-07-26T10:11:21.696455000Z
2025-07-26 10:11:23 (15040): Guest Log: 00:00:00.000350 main     OS Product: Linux
2025-07-26 10:11:23 (15040): Guest Log: 00:00:00.000397 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-26 10:11:23 (15040): Guest Log: 00:00:00.000439 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-26 10:11:23 (15040): Guest Log: 00:00:00.000482 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-26 10:11:23 (15040): Guest Log: 00:00:00.000484 main     Process ID: 1390
2025-07-26 10:11:23 (15040): Guest Log: 00:00:00.000485 main     Package type: LINUX_64BITS_GENERIC
2025-07-26 10:11:23 (15040): Guest Log: 00:00:00.061526 main     5.2.32 r132073 started. Verbose level = 0
2025-07-26 10:11:23 (15040): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-26 10:11:23 (15040): Guest Log: [INFO] Mounting shared directory
2025-07-26 10:11:24 (15040): Guest Log: [INFO] Checking for init_data.xml
2025-07-26 10:11:33 (15040): Guest Log: 00:00:10.064869 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 389 219 773 000ns (GuestNow=1 753 492 292 540 642 000 ns GuestLast=1 753 524 681 760 415 000 ns fSetTimeLastLoop=true )
2025-07-26 10:11:39 (15040): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-26 10:11:39 (15040): Guest Log: [INFO] Detected branch: prod
2025-07-26 10:11:40 (15040): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-26 10:11:40 (15040): Guest Log: Copying input files
2025-07-26 10:11:44 (15040): Guest Log: Copied input files into RunAtlas.
2025-07-26 10:11:44 (15040): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-26 10:11:44 (15040): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-26 10:11:44 (15040): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-26 10:11:44 (15040): Guest Log: Further information can be found at the LHC@home message board.
2025-07-26 10:11:59 (15040): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-26 10:12:00 (15040): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-26 10:12:00 (15040): Guest Log: 2.6.3.0 1673 0 30176 148758 3 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-26 10:12:02 (15040): Guest Log: copied the webapp to /var/www
2025-07-26 10:12:02 (15040): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-26 10:12:02 (15040): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-26 10:12:02 (15040): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-26 10:12:02 (15040): Guest Log:  *** Starting ATLAS job. (PandaID=6745057979 taskID=45743349) ***
2025-07-26 11:50:28 (15040): Status Report: Elapsed Time: '6000.000000'
2025-07-26 11:50:28 (15040): Status Report: CPU Time: '8580.062500'
2025-07-26 13:30:37 (15040): Status Report: Elapsed Time: '12000.000000'
2025-07-26 13:30:37 (15040): Status Report: CPU Time: '22830.796875'
2025-07-26 15:10:47 (15040): Status Report: Elapsed Time: '18000.000000'
2025-07-26 15:10:47 (15040): Status Report: CPU Time: '37123.437500'
2025-07-26 16:50:54 (15040): Status Report: Elapsed Time: '24000.000000'
2025-07-26 16:50:54 (15040): Status Report: CPU Time: '51376.484375'
2025-07-26 18:31:01 (15040): Status Report: Elapsed Time: '30000.881607'
2025-07-26 18:31:01 (15040): Status Report: CPU Time: '65620.140625'
2025-07-26 20:11:08 (15040): Status Report: Elapsed Time: '36000.881607'
2025-07-26 20:11:08 (15040): Status Report: CPU Time: '79856.734375'
2025-07-26 21:51:14 (15040): Status Report: Elapsed Time: '42000.881607'
2025-07-26 21:51:14 (15040): Status Report: CPU Time: '94126.812500'
2025-07-26 23:31:20 (15040): Status Report: Elapsed Time: '48000.881607'
2025-07-26 23:31:20 (15040): Status Report: CPU Time: '108417.156250'
2025-07-27 01:11:25 (15040): Status Report: Elapsed Time: '54000.881607'
2025-07-27 01:11:25 (15040): Status Report: CPU Time: '122666.984375'
2025-07-27 02:51:30 (15040): Status Report: Elapsed Time: '60000.881607'
2025-07-27 02:51:30 (15040): Status Report: CPU Time: '136914.968750'
2025-07-27 04:31:38 (15040): Status Report: Elapsed Time: '66000.881607'
2025-07-27 04:31:38 (15040): Status Report: CPU Time: '149269.515625'
2025-07-27 04:36:29 (15040): Guest Log:  *** Job finished ***
2025-07-27 04:36:29 (15040): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:06,442 | INFO     | end of generic workflow (traces error code: 0)
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:06,443 | INFO     | traces error code: 0
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:06,443 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:25,077 | INFO     | 66112s have passed since pilot start - server update state is 'UPDATING_FINAL'
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:26,603 | INFO     | PID=6030 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:26,604 | INFO     | found 0 job(s) in 20 queues
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:26,604 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:26,605 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:26,605 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:26,605 | INFO     | [monitor] control thread has ended
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:27,116 [wrapper] ==== pilot stdout END ====
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:27,122 [wrapper] ==== wrapper stdout RESUME ====
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:27,128 [wrapper] pilotpid: 6030
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:27,134 [wrapper] Pilot exit status: 0
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:27,630 [wrapper] pandaids: 6745057979
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:27,736 [wrapper] cleanup supervisor_pilot 15293 6031
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:27,745 [wrapper] Test setup, not cleaning
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:27,751 [wrapper] apfmon messages muted
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:27,757 [wrapper] ==== wrapper stdout END ====
2025-07-27 04:36:29 (15040): Guest Log: 2025-07-26 19:36:27,763 [wrapper] ==== wrapper stderr END ====
2025-07-27 04:36:29 (15040): Guest Log:  *** Error codes and diagnostics ***
2025-07-27 04:36:29 (15040): Guest Log:     "exeErrorCode": 0,
2025-07-27 04:36:29 (15040): Guest Log:     "exeErrorDiag": "",
2025-07-27 04:36:29 (15040): Guest Log:     "pilotErrorCode": 0,
2025-07-27 04:36:29 (15040): Guest Log:     "pilotErrorDiag": "",
2025-07-27 04:36:29 (15040): Guest Log:  *** Listing of results directory ***
2025-07-27 04:36:29 (15040): Guest Log: total 212728
2025-07-27 04:36:29 (15040): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 25 15:55 pilot3.tar.gz
2025-07-27 04:36:29 (15040): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 25 16:10 queuedata.json
2025-07-27 04:36:29 (15040): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 25 16:10 runpilot2-wrapper.sh
2025-07-27 04:36:29 (15040): Guest Log: -rwxr-xr-x. 1 atlas atlas      9016 Jul 26 01:11 init_data.xml
2025-07-27 04:36:29 (15040): Guest Log: -rwxr-xr-x. 1 atlas atlas    542886 Jul 26 01:11 input.tar.gz
2025-07-27 04:36:29 (15040): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 26 01:11 start_atlas.sh
2025-07-27 04:36:29 (15040): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 26 01:11 EVNT.45743347._001328.pool.root.1 -> /data/./ATLAS.root_0
2025-07-27 04:36:29 (15040): Guest Log: -rw-r--r--. 1 atlas atlas      2562 Jul 26 01:12 pandaJob.out
2025-07-27 04:36:29 (15040): Guest Log: -rw-------. 1 atlas atlas    979993 Jul 26 01:14 agis_schedconf.cvmfs.json
2025-07-27 04:36:29 (15040): Guest Log: drwx------. 4 atlas atlas      4096 Jul 26 01:14 pilot3
2025-07-27 04:36:29 (15040): Guest Log: -rw-------. 1 atlas atlas 207606245 Jul 26 19:31 HITS.45743349._023518.pool.root.1
2025-07-27 04:36:29 (15040): Guest Log: -rw-------. 1 atlas atlas      1031 Jul 26 19:34 memory_monitor_summary.json
2025-07-27 04:36:29 (15040): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 26 19:35 agis_ddmendpoints.agis.ALL.json
2025-07-27 04:36:29 (15040): Guest Log: -rw-------. 1 atlas atlas    608637 Jul 26 19:35 log.45743349._023518.job.log.tgz.1
2025-07-27 04:36:29 (15040): Guest Log: -rw-------. 1 atlas atlas      7800 Jul 26 19:35 heartbeat.json
2025-07-27 04:36:29 (15040): Guest Log: -rw-------. 1 atlas atlas        95 Jul 26 19:36 pilot_heartbeat.json
2025-07-27 04:36:29 (15040): Guest Log: -rw-------. 1 atlas atlas       860 Jul 26 19:36 pilotlog.txt
2025-07-27 04:36:29 (15040): Guest Log: -rw-------. 1 atlas atlas   2597586 Jul 26 19:36 log.45743349._023518.job.log.1
2025-07-27 04:36:29 (15040): Guest Log: -rw-------. 1 atlas atlas       357 Jul 26 19:36 output.list
2025-07-27 04:36:29 (15040): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 26 19:36 runtime_log
2025-07-27 04:36:29 (15040): Guest Log: -rw-------. 1 atlas atlas   3225600 Jul 26 19:36 result.tar.gz
2025-07-27 04:36:29 (15040): Guest Log: -rw-------. 1 atlas atlas       672 Jul 26 19:36 xN9LDm3Aaz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfuPLDmmyl9ym.diag
2025-07-27 04:36:29 (15040): Guest Log: -rw-r--r--. 1 atlas atlas      8620 Jul 26 19:36 runtime_log.err
2025-07-27 04:36:29 (15040): Guest Log: Looking for outputfile HITS.45743349._023518.pool.root.1
2025-07-27 04:36:29 (15040): Guest Log: HITS file was successfully produced
2025-07-27 04:36:29 (15040): Guest Log: -rw-------. 1 atlas atlas 207606245 Jul 26 19:31 /home/atlas/RunAtlas/HITS.45743349._023518.pool.root.1
2025-07-27 04:36:33 (15040): Guest Log: Successfully finished the ATLAS job!
2025-07-27 04:36:33 (15040): Guest Log: Copying the results back to the shared directory!
2025-07-27 04:36:34 (15040): Guest Log:  *** Contents of shared directory: ***
2025-07-27 04:36:34 (15040): Guest Log: total 347536
2025-07-27 04:36:34 (15040): Guest Log: -rwxrwxrwx. 1 root root 144464332 Jul 26 01:10 ATLAS.root_0
2025-07-27 04:36:34 (15040): Guest Log: -rwxrwxrwx. 1 root root 207606245 Jul 26 19:36 HITS.pool.root.1
2025-07-27 04:36:34 (15040): Guest Log: -rwxrwxrwx. 1 root root      9016 Jul 26 01:10 init_data.xml
2025-07-27 04:36:34 (15040): Guest Log: -rwxrwxrwx. 1 root root    542886 Jul 26 01:07 input.tar.gz
2025-07-27 04:36:34 (15040): Guest Log: -rwxrwxrwx. 1 root root   3225600 Jul 26 19:36 result.tar.gz
2025-07-27 04:36:34 (15040): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 26 01:07 start_atlas.sh
2025-07-27 04:36:34 (15040): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-27 04:36:34 (15040): VM Completion File Detected.
2025-07-27 04:36:34 (15040): Powering off VM.
2025-07-27 04:36:37 (15040): Successfully stopped VM.
2025-07-27 04:36:37 (15040): Deregistering VM. (boinc_4fdfda8f07533f54, slot#0)
2025-07-27 04:36:37 (15040): Removing network bandwidth throttle group from VM.
2025-07-27 04:36:37 (15040): Removing VM from VirtualBox.
04:36:42 (15040): called boinc_finish(0)

</stderr_txt>
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