Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:00:36 (3069960): wrapper (7.7.26015): starting
21:00:36 (3069960): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 21:00:36] Arguments: --nthreads 8
[2025-07-25 21:00:36] Threads: 8
[2025-07-25 21:00:36] Checking for CVMFS
[2025-07-25 21:00:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 21:00:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 21:00:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 21:00:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 21:00:37] 2.13.0.0 654572 16253 339180 148758 3 531 25248573 32935936 25547 16776704 0 84286364 99.610 129897919 20172 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 21:00:37] CVMFS is ok
[2025-07-25 21:00:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 21:00:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 21:00:37] Further information can be found at the LHC@home message board.
[2025-07-25 21:00:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 21:00:37] Checking for apptainer binary...
[2025-07-25 21:00:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 21:00:37] Running /usr/bin/apptainer --version
[2025-07-25 21:00:37] apptainer version 1.4.1-1.el9
[2025-07-25 21:00:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 21:00:37] c7-3-28.aglt2.org
[2025-07-25 21:00:37] apptainer works
[2025-07-25 21:00:37] Set ATHENA_PROC_NUMBER=8
[2025-07-25 21:00:37] Set ATHENA_CORE_NUMBER=8
[2025-07-25 21:00:37] Starting ATLAS job with PandaID=6745063249
[2025-07-25 21:00:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 22:59:03]  *** The last 200 lines of the pilot log: ***
[2025-07-25 22:59:03] 2025-07-26 02:58:28,982 | INFO     | sufficient remaining disk space (75719770112 B)
[2025-07-25 22:59:03] 2025-07-26 02:58:28,982 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-25 22:59:03] 2025-07-26 02:58:28,983 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6745063249: 3176997 B (within 2537553920 B limit)
[2025-07-25 22:59:03] 2025-07-26 02:58:28,983 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6745063249/HITS.45743349._027919.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-25 22:59:03] 2025-07-26 02:58:28,983 | INFO     | total size of present files: 0 B (workdir size: 3176997 B)
[2025-07-25 22:59:03] 2025-07-26 02:58:28,983 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6745063249/HITS.45743349._027919.pool.root.1 since it does not exist
[2025-07-25 22:59:03] 2025-07-26 02:58:28,986 | INFO     | fitting pss+swap vs Time
[2025-07-25 22:59:03] 2025-07-26 02:58:28,987 | INFO     | sum of square deviations: 471562330.0
[2025-07-25 22:59:03] 2025-07-26 02:58:28,987 | INFO     | sum of deviations: 3986065861.9999995
[2025-07-25 22:59:03] 2025-07-26 02:58:28,987 | INFO     | mean x: 1753495173.0
[2025-07-25 22:59:03] 2025-07-26 02:58:28,987 | INFO     | mean y: 2156925.0608695652
[2025-07-25 22:59:03] 2025-07-26 02:58:28,987 | INFO     | -- intersect: -14819949938.89725
[2025-07-25 22:59:03] 2025-07-26 02:58:28,988 | INFO     | intersect: -14819949938.89725
[2025-07-25 22:59:03] 2025-07-26 02:58:28,988 | INFO     | chi2: 1.6793736760929527
[2025-07-25 22:59:03] 2025-07-26 02:58:28,988 | INFO     | sum of square deviations: 412686807.5
[2025-07-25 22:59:03] 2025-07-26 02:58:29,006 | INFO     | sum of deviations: 3735428940.0
[2025-07-25 22:59:03] 2025-07-26 02:58:29,006 | INFO     | mean x: 1753495020.5
[2025-07-25 22:59:03] 2025-07-26 02:58:29,006 | INFO     | mean y: 2156276.7454545456
[2025-07-25 22:59:03] 2025-07-26 02:58:29,006 | INFO     | -- intersect: -15869579690.296799
[2025-07-25 22:59:03] 2025-07-26 02:58:29,006 | INFO     | intersect: -15869579690.296799
[2025-07-25 22:59:03] 2025-07-26 02:58:29,007 | INFO     | chi2: 1.6804227441470638
[2025-07-25 22:59:03] 2025-07-26 02:58:29,007 | INFO     | current chi2=1.6804227441470638 (change=-0.062467815772350194 %)
[2025-07-25 22:59:03] 2025-07-26 02:58:29,007 | INFO     | right removable region: 109
[2025-07-25 22:59:03] 2025-07-26 02:58:29,007 | INFO     | sum of square deviations: 412686807.5
[2025-07-25 22:59:03] 2025-07-26 02:58:29,007 | INFO     | sum of deviations: -10257634370.5
[2025-07-25 22:59:03] 2025-07-26 02:58:29,008 | INFO     | mean x: 1753495325.5
[2025-07-25 22:59:03] 2025-07-26 02:58:29,008 | INFO     | mean y: 2193034.2454545456
[2025-07-25 22:59:03] 2025-07-26 02:58:29,008 | INFO     | -- intersect: 43586610060.612076
[2025-07-25 22:59:03] 2025-07-26 02:58:29,008 | INFO     | intersect: 43586610060.612076
[2025-07-25 22:59:03] 2025-07-26 02:58:29,008 | INFO     | chi2: 0.22718115114145307
[2025-07-25 22:59:03] 2025-07-26 02:58:29,008 | INFO     | current chi2=0.22718115114145307 (change=86.47226913369347 %)
[2025-07-25 22:59:03] 2025-07-26 02:58:29,008 | INFO     | sum of square deviations: 358927660.0
[2025-07-25 22:59:03] 2025-07-26 02:58:29,009 | INFO     | sum of deviations: -5229147591.000001
[2025-07-25 22:59:03] 2025-07-26 02:58:29,009 | INFO     | mean x: 1753495478.0
[2025-07-25 22:59:03] 2025-07-26 02:58:29,009 | INFO     | mean y: 2178721.095238095
[2025-07-25 22:59:03] 2025-07-26 02:58:29,009 | INFO     | -- intersect: 25548514867.52958
[2025-07-25 22:59:03] 2025-07-26 02:58:29,009 | INFO     | intersect: 25548514867.52958
[2025-07-25 22:59:03] 2025-07-26 02:58:29,009 | INFO     | chi2: 0.1726125314110595
[2025-07-25 22:59:03] 2025-07-26 02:58:29,009 | INFO     | current chi2=0.1726125314110595 (change=24.01987112760808 %)
[2025-07-25 22:59:03] 2025-07-26 02:58:29,030 | INFO     | left removable region: 20
[2025-07-25 22:59:03] 2025-07-26 02:58:29,030 | INFO     | sum of square deviations: 218571540.0
[2025-07-25 22:59:03] 2025-07-26 02:58:29,030 | INFO     | sum of deviations: 569721394.9999999
[2025-07-25 22:59:03] 2025-07-26 02:58:29,031 | INFO     | mean x: 1753495600.0
[2025-07-25 22:59:03] 2025-07-26 02:58:29,031 | INFO     | mean y: 2159189.04494382
[2025-07-25 22:59:03] 2025-07-26 02:58:29,031 | INFO     | -- intersect: -4568444830.84878
[2025-07-25 22:59:03] 2025-07-26 02:58:29,031 | INFO     | intersect: -4568444830.84878
[2025-07-25 22:59:03] 2025-07-26 02:58:29,031 | INFO     | chi2: 0.02414488098973984
[2025-07-25 22:59:03] 2025-07-26 02:58:29,031 | INFO     | -- intersect: -4568444830.84878
[2025-07-25 22:59:03] 2025-07-26 02:58:29,031 | INFO     | current memory leak: 2.61 B/s (using 89 data points, chi2=0.02)
[2025-07-25 22:59:03] 2025-07-26 02:58:29,032 | INFO     | could have reported an average CPU frequency of 3086 MHz (7 samples)
[2025-07-25 22:59:03] 2025-07-26 02:58:29,032 | INFO     | ..............................
[2025-07-25 22:59:03] 2025-07-26 02:58:29,032 | INFO     | . Timing measurements:
[2025-07-25 22:59:03] 2025-07-26 02:58:29,032 | INFO     | . get job = 0 s
[2025-07-25 22:59:03] 2025-07-26 02:58:29,032 | INFO     | . initial setup = 3 s
[2025-07-25 22:59:03] 2025-07-26 02:58:29,032 | INFO     | . payload setup = 11 s
[2025-07-25 22:59:03] 2025-07-26 02:58:29,032 | INFO     | . stage-in = 0 s
[2025-07-25 22:59:03] 2025-07-26 02:58:29,032 | INFO     | . payload execution = 7003 s
[2025-07-25 22:59:03] 2025-07-26 02:58:29,032 | INFO     | . stage-out = 1 s
[2025-07-25 22:59:03] 2025-07-26 02:58:29,033 | INFO     | . log creation = 0 s
[2025-07-25 22:59:03] 2025-07-26 02:58:29,033 | INFO     | ..............................
[2025-07-25 22:59:03] 2025-07-26 02:58:29,183 | INFO     | 
[2025-07-25 22:59:03] 2025-07-26 02:58:29,184 | INFO     | job summary report
[2025-07-25 22:59:03] 2025-07-26 02:58:29,184 | INFO     | --------------------------------------------------
[2025-07-25 22:59:03] 2025-07-26 02:58:29,184 | INFO     | PanDA job id: 6745063249
[2025-07-25 22:59:03] 2025-07-26 02:58:29,184 | INFO     | task id: 45743349
[2025-07-25 22:59:03] 2025-07-26 02:58:29,184 | INFO     | errors: (none)
[2025-07-25 22:59:03] 2025-07-26 02:58:29,184 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 22:59:03] 2025-07-26 02:58:29,184 | INFO     | pilot state: finished 
[2025-07-25 22:59:03] 2025-07-26 02:58:29,184 | INFO     | transexitcode: 0
[2025-07-25 22:59:03] 2025-07-26 02:58:29,184 | INFO     | exeerrorcode: 0
[2025-07-25 22:59:03] 2025-07-26 02:58:29,184 | INFO     | exeerrordiag: 
[2025-07-25 22:59:03] 2025-07-26 02:58:29,185 | INFO     | exitcode: 0
[2025-07-25 22:59:03] 2025-07-26 02:58:29,185 | INFO     | exitmsg: OK
[2025-07-25 22:59:03] 2025-07-26 02:58:29,185 | INFO     | cpuconsumptiontime: 37338 s
[2025-07-25 22:59:03] 2025-07-26 02:58:29,185 | INFO     | nevents: 400
[2025-07-25 22:59:03] 2025-07-26 02:58:29,185 | INFO     | neventsw: 0
[2025-07-25 22:59:03] 2025-07-26 02:58:29,185 | INFO     | pid: 3082744
[2025-07-25 22:59:03] 2025-07-26 02:58:29,185 | INFO     | pgrp: 3082744
[2025-07-25 22:59:03] 2025-07-26 02:58:29,185 | INFO     | corecount: 8
[2025-07-25 22:59:03] 2025-07-26 02:58:29,185 | INFO     | event service: False
[2025-07-25 22:59:03] 2025-07-26 02:58:29,185 | INFO     | sizes: {0: 2397473, 1: 2397501, 9: 2397763, 11: 2397791, 7018: 2425050, 7020: 2434232, 7033: 2434398}
[2025-07-25 22:59:03] 2025-07-26 02:58:29,185 | INFO     | --------------------------------------------------
[2025-07-25 22:59:03] 2025-07-26 02:58:29,185 | INFO     | 
[2025-07-25 22:59:03] 2025-07-26 02:58:29,185 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 22:59:03] 2025-07-26 02:58:29,326 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,327 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,327 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,327 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,327 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,327 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,327 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,327 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,328 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,328 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,328 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,328 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,328 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,328 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,328 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,328 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,328 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,328 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 22:59:03] 2025-07-26 02:58:29,328 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,328 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 22:59:03] 2025-07-26 02:58:29,329 | INFO     | job 6745063249 has completed (purged errors)
[2025-07-25 22:59:03] 2025-07-26 02:58:29,329 | INFO     | overall cleanup function is called
[2025-07-25 22:59:03] 2025-07-26 02:58:30,116 | INFO     | number of running child processes to parent process 3082744: 1
[2025-07-25 22:59:03] 2025-07-26 02:58:30,117 | INFO     | maximum number of monitored processes: 6
[2025-07-25 22:59:03] 2025-07-26 02:58:30,117 | INFO     | aborting job monitoring since job object (job id=6745063249) has expired
[2025-07-25 22:59:03] 2025-07-26 02:58:30,344 | INFO     | --- collectZombieJob: --- 10, [3082744]
[2025-07-25 22:59:03] 2025-07-26 02:58:30,344 | INFO     | zombie collector waiting for pid 3082744
[2025-07-25 22:59:03] 2025-07-26 02:58:30,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 22:59:03] 2025-07-26 02:58:30,344 | INFO     | collected zombie processes
[2025-07-25 22:59:03] 2025-07-26 02:58:30,344 | INFO     | will attempt to kill all subprocesses of pid=3082744
[2025-07-25 22:59:03] 2025-07-26 02:58:31,132 | INFO     | process IDs to be killed: [3082744] (in reverse order)
[2025-07-25 22:59:03] 2025-07-26 02:58:31,372 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 22:59:03] 2025-07-26 02:58:31,372 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 22:59:03] 2025-07-26 02:58:31,429 | INFO     | did not find any defunct processes belonging to 3082744
[2025-07-25 22:59:03] 2025-07-26 02:58:31,522 | INFO     | did not find any defunct processes belonging to 3082744
[2025-07-25 22:59:03] 2025-07-26 02:58:31,522 | INFO     | ready for new job
[2025-07-25 22:59:03] 2025-07-26 02:58:31,523 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 22:59:03] 2025-07-26 02:58:31,534 | INFO     | ***************************************
[2025-07-25 22:59:03] 2025-07-26 02:58:31,535 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 22:59:03] 2025-07-26 02:58:31,535 | INFO     | ***************************************
[2025-07-25 22:59:03] 2025-07-26 02:58:31,535 | INFO     | 
[2025-07-25 22:59:03] 2025-07-26 02:58:31,558 | INFO     | architecture information:
[2025-07-25 22:59:03] 2025-07-26 02:58:31,563 | INFO     | executing command: cat /etc/os-release
[2025-07-25 22:59:03] 2025-07-26 02:58:31,707 | INFO     | cat /etc/os-release:
[2025-07-25 22:59:03] NAME="CentOS Linux"
[2025-07-25 22:59:03] VERSION="7 (Core)"
[2025-07-25 22:59:03] ID="centos"
[2025-07-25 22:59:03] ID_LIKE="rhel fedora"
[2025-07-25 22:59:03] VERSION_ID="7"
[2025-07-25 22:59:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 22:59:03] ANSI_COLOR="0;31"
[2025-07-25 22:59:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 22:59:03] HOME_URL="https://www.centos.org/"
[2025-07-25 22:59:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 22:59:03] 
[2025-07-25 22:59:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 22:59:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 22:59:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 22:59:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 22:59:03] 
[2025-07-25 22:59:03] 2025-07-26 02:58:31,707 | INFO     | ***************************************
[2025-07-25 22:59:03] 2025-07-26 02:58:32,211 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 22:59:03] 2025-07-26 02:58:32,276 | INFO     | sufficient remaining disk space (75723964416 B)
[2025-07-25 22:59:03] 2025-07-26 02:58:32,277 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 22:59:03] 2025-07-26 02:58:32,277 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 22:59:03] 2025-07-26 02:58:32,277 | INFO     | update_server=False
[2025-07-25 22:59:03] 2025-07-26 02:58:32,277 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 22:59:03] 2025-07-26 02:58:32,627 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-25 22:59:03] 2025-07-26 02:58:32,628 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-25 22:59:03] 2025-07-26 02:58:32,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 22:59:03] 2025-07-26 02:58:32,628 | INFO     | will abort loop
[2025-07-25 22:59:03] 2025-07-26 02:58:32,894 | INFO     | all data control threads have been joined
[2025-07-25 22:59:03] 2025-07-26 02:58:32,897 | INFO     | all job control threads have been joined
[2025-07-25 22:59:03] 2025-07-26 02:58:33,081 | INFO     | all payload control threads have been joined
[2025-07-25 22:59:03] 2025-07-26 02:58:33,284 | INFO     | [job] retrieve thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:33,345 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:33,618 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 22:59:03] 2025-07-26 02:58:33,634 | INFO     | [job] job monitor thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:33,689 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:33,694 | INFO     | [data] copytool_in thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:33,836 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:33,900 | INFO     | [data] control thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:33,926 | INFO     | [job] control thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:34,102 | INFO     | [payload] control thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:34,197 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 22:59:03] 2025-07-26 02:58:34,570 | INFO     | [job] validate thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:34,574 | INFO     | [payload] validate_post thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:34,740 | INFO     | [payload] failed_post thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:35,203 | INFO     | [job] queue monitor thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:35,328 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 22:59:03] 2025-07-26 02:58:35,625 | INFO     | [data] copytool_out thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:39,337 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:43,157 | INFO     | job.realtimelogging is not enabled
[2025-07-25 22:59:03] 2025-07-26 02:58:44,163 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 22:59:03] 2025-07-26 02:58:45,927 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140625390987072)>', '<ExcThread(monitor, started 140624669959936)>']
[2025-07-25 22:59:03] 2025-07-26 02:58:50,954 | INFO     | all workflow threads have been joined
[2025-07-25 22:59:03] 2025-07-26 02:58:50,954 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 22:59:03] 2025-07-26 02:58:50,954 | INFO     | traces error code: 0
[2025-07-25 22:59:03] 2025-07-26 02:58:50,954 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 22:59:03] 2025-07-26 02:59:02,288 | INFO     | PID=3073700 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 22:59:03] 2025-07-26 02:59:02,289 | INFO     | .. there are 48 such processes running
[2025-07-25 22:59:03] 2025-07-26 02:59:02,290 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 22:59:03] 2025-07-26 02:59:02,290 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 22:59:03] 2025-07-26 02:59:02,290 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 22:59:03] 2025-07-26 02:59:02,290 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 22:59:03] 2025-07-26 02:59:02,290 | INFO     | [monitor] control thread has ended
[2025-07-25 22:59:03] 2025-07-26 02:59:02,477 [wrapper] ==== pilot stdout END ====
[2025-07-25 22:59:03] 2025-07-26 02:59:02,481 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 22:59:03] 2025-07-26 02:59:02,484 [wrapper] pilotpid: 3073700
[2025-07-25 22:59:03] 2025-07-26 02:59:02,493 [wrapper] Pilot exit status: 0
[2025-07-25 22:59:03] 2025-07-26 02:59:02,585 [wrapper] pandaids: 6745063249
[2025-07-25 22:59:03] 2025-07-26 02:59:02,743 [wrapper] cleanup supervisor_pilot 3927127 3073701
[2025-07-25 22:59:03] 2025-07-26 02:59:02,753 [wrapper] Test setup, not cleaning
[2025-07-25 22:59:03] 2025-07-26 02:59:02,760 [wrapper] apfmon messages muted
[2025-07-25 22:59:03] 2025-07-26 02:59:02,786 [wrapper] ==== wrapper stdout END ====
[2025-07-25 22:59:03] 2025-07-26 02:59:02,798 [wrapper] ==== wrapper stderr END ====
[2025-07-25 22:59:03]  *** Error codes and diagnostics ***
[2025-07-25 22:59:03]     "exeErrorCode": 0,
[2025-07-25 22:59:03]     "exeErrorDiag": "",
[2025-07-25 22:59:03]     "pilotErrorCode": 0,
[2025-07-25 22:59:03]     "pilotErrorDiag": "",
[2025-07-25 22:59:03]  *** Listing of results directory ***
[2025-07-25 22:59:03] total 349556
[2025-07-25 22:59:03] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 18:10 queuedata.json
[2025-07-25 22:59:03] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 18:10 pilot3.tar.gz
[2025-07-25 22:59:03] -rwx------. 1 boincer umatlas     36292 Jul 25 18:11 runpilot2-wrapper.sh
[2025-07-25 22:59:03] -rw-r--r--. 1 boincer umatlas       100 Jul 25 21:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 22:59:03] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 21:00 run_atlas
[2025-07-25 22:59:03] -rw-r--r--. 1 boincer umatlas       105 Jul 25 21:00 job.xml
[2025-07-25 22:59:03] -rw-r--r--. 2 boincer umatlas 144435081 Jul 25 21:00 EVNT.45743347._001554.pool.root.1
[2025-07-25 22:59:03] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 21:00 start_atlas.sh
[2025-07-25 22:59:03] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 21:00 shared
[2025-07-25 22:59:03] -rw-r--r--. 2 boincer umatlas    542888 Jul 25 21:00 input.tar.gz
[2025-07-25 22:59:03] -rw-r--r--. 1 boincer umatlas         0 Jul 25 21:00 boinc_lockfile
[2025-07-25 22:59:03] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 21:00 pandaJob.out
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas    979993 Jul 25 21:00 agis_schedconf.cvmfs.json
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas   1593052 Jul 25 21:00 agis_ddmendpoints.agis.ALL.json
[2025-07-25 22:59:03] drwx------. 4 boincer umatlas      4096 Jul 25 21:00 pilot3
[2025-07-25 22:59:03] -rw-r--r--. 1 boincer umatlas      6933 Jul 25 22:55 init_data.xml
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas 207855277 Jul 25 22:57 HITS.45743349._027919.pool.root.1
[2025-07-25 22:59:03] -rw-r--r--. 1 boincer umatlas       529 Jul 25 22:57 boinc_task_state.xml
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas      1033 Jul 25 22:58 memory_monitor_summary.json
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas    311398 Jul 25 22:58 log.45743349._027919.job.log.tgz.1
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas      7771 Jul 25 22:58 heartbeat.json
[2025-07-25 22:59:03] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 22:59 boinc_mmap_file
[2025-07-25 22:59:03] -rw-r--r--. 1 boincer umatlas        27 Jul 25 22:59 wrapper_checkpoint.txt
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas       823 Jul 25 22:59 pilotlog.txt
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas        95 Jul 25 22:59 pilot_heartbeat.json
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas    577432 Jul 25 22:59 log.45743349._027919.job.log.1
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas       357 Jul 25 22:59 output.list
[2025-07-25 22:59:03] -rw-r--r--. 1 boincer umatlas       620 Jul 25 22:59 runtime_log
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas    911360 Jul 25 22:59 result.tar.gz
[2025-07-25 22:59:03] -rw-r--r--. 1 boincer umatlas      8655 Jul 25 22:59 runtime_log.err
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas       652 Jul 25 22:59 l0xNDmQofz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8ZQLDmv0VSln.diag
[2025-07-25 22:59:03] -rw-r--r--. 1 boincer umatlas     21368 Jul 25 22:59 stderr.txt
[2025-07-25 22:59:03] HITS file was successfully produced:
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas 207855277 Jul 25 22:57 shared/HITS.pool.root.1
[2025-07-25 22:59:03]  *** Contents of shared directory: ***
[2025-07-25 22:59:03] total 345480
[2025-07-25 22:59:03] -rw-r--r--. 2 boincer umatlas 144435081 Jul 25 21:00 ATLAS.root_0
[2025-07-25 22:59:03] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 21:00 start_atlas.sh
[2025-07-25 22:59:03] -rw-r--r--. 2 boincer umatlas    542888 Jul 25 21:00 input.tar.gz
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas 207855277 Jul 25 22:57 HITS.pool.root.1
[2025-07-25 22:59:03] -rw-------. 1 boincer umatlas    911360 Jul 25 22:59 result.tar.gz
22:59:25 (3069960): run_atlas exited; CPU time 37632.842254
22:59:25 (3069960): called boinc_finish(0)

</stderr_txt>
]]>

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