Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
02:07:20 (4039): wrapper (7.7.26015): starting
02:07:20 (4039): wrapper: running run_atlas (--nthreads 4)
[2025-07-26 02:07:20] Arguments: --nthreads 4
[2025-07-26 02:07:20] Threads: 4
[2025-07-26 02:07:20] Checking for CVMFS
[2025-07-26 02:08:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 02:08:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 02:08:18] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 02:08:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 02:08:18] 2.11.5.0 4260 0 25200 148758 3 1 2763923 4194304 0 130560 0 0 0.000 1291 102 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2025-07-26 02:08:18] CVMFS is ok
[2025-07-26 02:08:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 02:08:18] Checking for apptainer binary...
[2025-07-26 02:08:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 02:08:18] Running /usr/bin/apptainer --version
[2025-07-26 02:08:18] apptainer version 1.0.3
[2025-07-26 02:08:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 02:08:19] TeeC22
[2025-07-26 02:08:19] apptainer works
[2025-07-26 02:08:19] Set ATHENA_PROC_NUMBER=4
[2025-07-26 02:08:19] Set ATHENA_CORE_NUMBER=4
[2025-07-26 02:08:19] Starting ATLAS job with PandaID=6745060033
[2025-07-26 02:08:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 02:14:09]  *** The last 200 lines of the pilot log: ***
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | extracted standard info from prmon json
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | WARNING  | wrong length of table data, x=[1753492228.0, 1753492289.0], y=[829.0, 0.0] (must be same and length>=4)
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | could have reported an average CPU frequency of 3341 MHz (4 samples)
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | ..............................
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | . Timing measurements:
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | . get job = 0 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . initial setup = 22 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . payload setup = 28 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . stage-in = 0 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . payload execution = 64 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . stage-out = 0 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . log creation = 0 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | ..............................
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | executing command: tail -n 20 /home/m/BOINC/slots/1/PanDA_Pilot-6745060033/pilotlog.txt
[2025-07-26 02:14:09] 2025-07-26 01:13:37,211 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-26 02:14:09] - Log from pilotlog.txt -
[2025-07-26 02:14:09] 2025-07-26 01:13:37,204 | INFO     | using path: /home/m/BOINC/slots/1/PanDA_Pilot-6745060033/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | extracted standard info from prmon json
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | WARNING  | wrong length of table data, x=[1753492228.0, 1753492289.0], y=[829.0, 0.0] (must be same and length>=4)
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | could have reported an average CPU frequency of 3341 MHz (4 samples)
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | ..............................
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | . Timing measurements:
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | . get job = 0 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . initial setup = 22 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . payload setup = 28 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . stage-in = 0 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . payload execution = 64 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . stage-out = 0 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . log creation = 0 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | ..............................
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | executing command: tail -n 20 /home/m/BOINC/slots/1/PanDA_Pilot-6745060033/pilotlog.txt
[2025-07-26 02:14:09] 2025-07-26 01:13:37,212 | WARNING  | 
[2025-07-26 02:14:09] [begin log extracts]
[2025-07-26 02:14:09] - Log from pilotlog.txt -
[2025-07-26 02:14:09] 2025-07-26 01:13:37,204 | INFO     | using path: /home/m/BOINC/slots/1/PanDA_Pilot-6745060033/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | extracted standard info from prmon json
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | WARNING  | wrong length of table data, x=[1753492228.0, 1753492289.0], y=[829.0, 0.0] (must be same and length>=4)
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | could have reported an average CPU frequency of 3341 MHz (4 samples)
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | ..............................
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | . Timing measurements:
[2025-07-26 02:14:09] 2025-07-26 01:13:37,205 | INFO     | . get job = 0 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . initial setup = 22 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . payload setup = 28 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . stage-in = 0 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . payload execution = 64 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . stage-out = 0 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | . log creation = 0 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | ..............................
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 02:14:09] 2025-07-26 01:13:37,206 | INFO     | executing command: tail -n 20 /home/m/BOINC/slots/1/PanDA_Pilot-6745060033/pilotlog.txt
[2025-07-26 02:14:09] [end log extracts]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,212 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-26 02:14:09] 2025-07-26 01:13:37,212 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-26 02:14:09] 2025-07-26 01:13:37,256 | INFO     | 
[2025-07-26 02:14:09] 2025-07-26 01:13:37,256 | INFO     | job summary report
[2025-07-26 02:14:09] 2025-07-26 01:13:37,256 | INFO     | --------------------------------------------------
[2025-07-26 02:14:09] 2025-07-26 01:13:37,256 | INFO     | PanDA job id: 6745060033
[2025-07-26 02:14:09] 2025-07-26 01:13:37,256 | INFO     | task id: 45743349
[2025-07-26 02:14:09] 2025-07-26 01:13:37,256 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-26 02:11:25,562 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-26 02:14:09] 2025-07-26 01:13:37,256 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 02:14:09] 2025-07-26 01:13:37,256 | INFO     | pilot state: failed 
[2025-07-26 02:14:09] 2025-07-26 01:13:37,256 | INFO     | transexitcode: 65
[2025-07-26 02:14:09] 2025-07-26 01:13:37,256 | INFO     | exeerrorcode: 65
[2025-07-26 02:14:09] 2025-07-26 01:13:37,256 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "ClassIDSvc                                                       FATAL in
[2025-07-26 02:14:09] 2025-07-26 01:13:37,256 | INFO     | exitcode: 65
[2025-07-26 02:14:09] 2025-07-26 01:13:37,257 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "ClassIDSvc                                                       FATAL in sysI
[2025-07-26 02:14:09] 2025-07-26 01:13:37,257 | INFO     | cpuconsumptiontime: 26 s
[2025-07-26 02:14:09] 2025-07-26 01:13:37,257 | INFO     | nevents: 0
[2025-07-26 02:14:09] 2025-07-26 01:13:37,257 | INFO     | neventsw: 0
[2025-07-26 02:14:09] 2025-07-26 01:13:37,257 | INFO     | pid: 14710
[2025-07-26 02:14:09] 2025-07-26 01:13:37,257 | INFO     | pgrp: 14710
[2025-07-26 02:14:09] 2025-07-26 01:13:37,257 | INFO     | corecount: 4
[2025-07-26 02:14:09] 2025-07-26 01:13:37,257 | INFO     | event service: False
[2025-07-26 02:14:09] 2025-07-26 01:13:37,257 | INFO     | sizes: {0: 2397473, 2: 2397735, 11: 2397763, 97: 2430805, 98: 2430805, 221: 2430971}
[2025-07-26 02:14:09] 2025-07-26 01:13:37,257 | INFO     | --------------------------------------------------
[2025-07-26 02:14:09] 2025-07-26 01:13:37,257 | INFO     | 
[2025-07-26 02:14:09] 2025-07-26 01:13:37,257 | INFO     | executing command: ls -lF /home/m/BOINC/slots/1
[2025-07-26 02:14:09] 2025-07-26 01:13:37,264 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,264 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,264 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,264 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,264 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,264 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,264 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,264 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,264 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,264 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,265 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,265 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,265 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,265 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,265 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,265 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,265 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,265 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 02:14:09] 2025-07-26 01:13:37,265 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,265 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 02:14:09] 2025-07-26 01:13:37,265 | INFO     | job 6745060033 has completed (purged errors)
[2025-07-26 02:14:09] 2025-07-26 01:13:37,265 | INFO     | overall cleanup function is called
[2025-07-26 02:14:09] 2025-07-26 01:13:38,271 | INFO     | --- collectZombieJob: --- 10, [14710]
[2025-07-26 02:14:09] 2025-07-26 01:13:38,271 | INFO     | zombie collector waiting for pid 14710
[2025-07-26 02:14:09] 2025-07-26 01:13:38,272 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 02:14:09] 2025-07-26 01:13:38,272 | INFO     | collected zombie processes
[2025-07-26 02:14:09] 2025-07-26 01:13:38,272 | INFO     | will attempt to kill all subprocesses of pid=14710
[2025-07-26 02:14:09] 2025-07-26 01:13:38,321 | INFO     | process IDs to be killed: [14710] (in reverse order)
[2025-07-26 02:14:09] 2025-07-26 01:13:38,340 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 02:14:09] 2025-07-26 01:13:38,340 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 02:14:09] 2025-07-26 01:13:38,342 | INFO     | did not find any defunct processes belonging to 14710
[2025-07-26 02:14:09] 2025-07-26 01:13:38,343 | INFO     | did not find any defunct processes belonging to 14710
[2025-07-26 02:14:09] 2025-07-26 01:13:38,343 | INFO     | ready for new job
[2025-07-26 02:14:09] 2025-07-26 01:13:38,343 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 02:14:09] 2025-07-26 01:13:38,344 | INFO     | ***************************************
[2025-07-26 02:14:09] 2025-07-26 01:13:38,344 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 02:14:09] 2025-07-26 01:13:38,344 | INFO     | ***************************************
[2025-07-26 02:14:09] 2025-07-26 01:13:38,344 | INFO     | 
[2025-07-26 02:14:09] 2025-07-26 01:13:38,361 | INFO     | architecture information:
[2025-07-26 02:14:09] 2025-07-26 01:13:38,361 | INFO     | executing command: cat /etc/os-release
[2025-07-26 02:14:09] 2025-07-26 01:13:38,369 | INFO     | cat /etc/os-release:
[2025-07-26 02:14:09] NAME="CentOS Linux"
[2025-07-26 02:14:09] VERSION="7 (Core)"
[2025-07-26 02:14:09] ID="centos"
[2025-07-26 02:14:09] ID_LIKE="rhel fedora"
[2025-07-26 02:14:09] VERSION_ID="7"
[2025-07-26 02:14:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 02:14:09] ANSI_COLOR="0;31"
[2025-07-26 02:14:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 02:14:09] HOME_URL="https://www.centos.org/"
[2025-07-26 02:14:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 02:14:09] 
[2025-07-26 02:14:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 02:14:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 02:14:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 02:14:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 02:14:09] 
[2025-07-26 02:14:09] 2025-07-26 01:13:38,369 | INFO     | ***************************************
[2025-07-26 02:14:09] 2025-07-26 01:13:38,872 | INFO     | executing command: df -mP /home/m/BOINC/slots/1
[2025-07-26 02:14:09] 2025-07-26 01:13:38,886 | INFO     | sufficient remaining disk space (417915207680 B)
[2025-07-26 02:14:09] 2025-07-26 01:13:38,886 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 02:14:09] 2025-07-26 01:13:38,886 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 02:14:09] 2025-07-26 01:13:38,886 | INFO     | update_server=False
[2025-07-26 02:14:09] 2025-07-26 01:13:38,886 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 02:14:09] 2025-07-26 01:13:38,887 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 02:14:09] 2025-07-26 01:13:38,887 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 02:14:09] 2025-07-26 01:13:38,887 | INFO     | aborting loop
[2025-07-26 02:14:09] 2025-07-26 01:13:39,199 | INFO     | all job control threads have been joined
[2025-07-26 02:14:09] 2025-07-26 01:13:39,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 02:14:09] 2025-07-26 01:13:39,892 | INFO     | [job] retrieve thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:39,893 | INFO     | [job] job monitor thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:39,893 | INFO     | [job] queue monitor thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:39,956 | INFO     | all data control threads have been joined
[2025-07-26 02:14:09] 2025-07-26 01:13:40,084 | INFO     | all payload control threads have been joined
[2025-07-26 02:14:09] 2025-07-26 01:13:40,181 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:40,205 | INFO     | [job] control thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:40,212 | INFO     | [payload] validate_post thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:40,272 | INFO     | [data] copytool_in thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:40,624 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:40,962 | INFO     | [data] control thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:41,083 | INFO     | [payload] failed_post thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:41,088 | INFO     | [payload] control thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:41,156 | INFO     | [job] validate thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:41,265 | INFO     | [data] copytool_out thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:41,297 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:41,384 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:41,759 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 02:14:09] 2025-07-26 01:13:45,765 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 02:14:09] 2025-07-26 01:13:47,469 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140136312784704)>', '<ExcThread(monitor, started 140135580559104)>']
[2025-07-26 02:14:09] 2025-07-26 01:13:52,495 | INFO     | all workflow threads have been joined
[2025-07-26 02:14:09] 2025-07-26 01:13:52,495 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 02:14:09] 2025-07-26 01:13:52,496 | INFO     | traces error code: 0
[2025-07-26 02:14:09] 2025-07-26 01:13:52,496 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 02:14:09] 2025-07-26 01:14:09,636 | INFO     | PID=8288 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-26 02:14:09] 2025-07-26 01:14:09,636 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 02:14:09] 2025-07-26 01:14:09,636 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 02:14:09] 2025-07-26 01:14:09,636 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 02:14:09] 2025-07-26 01:14:09,636 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 02:14:09] 2025-07-26 01:14:09,636 | INFO     | [monitor] control thread has ended
[2025-07-26 02:14:09] 2025-07-26 01:14:09,701 [wrapper] ==== pilot stdout END ====
[2025-07-26 02:14:09] 2025-07-26 01:14:09,702 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 02:14:09] 2025-07-26 01:14:09,703 [wrapper] pilotpid: 8288
[2025-07-26 02:14:09] 2025-07-26 01:14:09,704 [wrapper] Pilot exit status: 0
[2025-07-26 02:14:09] 2025-07-26 01:14:09,717 [wrapper] pandaids: 6745060033
[2025-07-26 02:14:09] 2025-07-26 01:14:09,726 [wrapper] cleanup supervisor_pilot  8294 8289
[2025-07-26 02:14:09] 2025-07-26 01:14:09,727 [wrapper] Test setup, not cleaning
[2025-07-26 02:14:09] 2025-07-26 01:14:09,729 [wrapper] apfmon messages muted
[2025-07-26 02:14:09] 2025-07-26 01:14:09,730 [wrapper] ==== wrapper stdout END ====
[2025-07-26 02:14:09] 2025-07-26 01:14:09,731 [wrapper] ==== wrapper stderr END ====
[2025-07-26 02:14:09]  *** Error codes and diagnostics ***
[2025-07-26 02:14:09]     "exeErrorCode": 65,
[2025-07-26 02:14:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"ClassIDSvc                                                       FATAL in sysInitialize(): standard std::exception is caught\"",
[2025-07-26 02:14:09]     "pilotErrorCode": 1305,
[2025-07-26 02:14:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"ClassIDSvc                                                       FATAL in sysInitia",
[2025-07-26 02:14:09]  *** Listing of results directory ***
[2025-07-26 02:14:09] total 228108
[2025-07-26 02:14:09] -rw-r--r-- 1 m m    530466 Jul 25 19:32 pilot3.tar.gz
[2025-07-26 02:14:09] -rwx------ 1 m m     36292 Jul 25 19:44 runpilot2-wrapper.sh
[2025-07-26 02:14:09] -rw-r--r-- 1 m m      5112 Jul 25 19:44 queuedata.json
[2025-07-26 02:14:09] -rw-rw-r-- 1 m m       100 Jul 26 02:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 02:14:09] -rwxr-xr-x 1 m m      7986 Jul 26 02:07 run_atlas
[2025-07-26 02:14:09] -rw-rw-r-- 1 m m       105 Jul 26 02:07 job.xml
[2025-07-26 02:14:09] -rw-r--r-- 2 m m     15095 Jul 26 02:07 start_atlas.sh
[2025-07-26 02:14:09] drwxrwx--x 2 m m      4096 Jul 26 02:07 shared
[2025-07-26 02:14:09] -rw-r--r-- 2 m m    542889 Jul 26 02:07 input.tar.gz
[2025-07-26 02:14:09] -rw-rw-r-- 1 m m      5882 Jul 26 02:07 init_data.xml
[2025-07-26 02:14:09] -rw-r--r-- 2 m m 229461302 Jul 26 02:07 EVNT.45743347._001425.pool.root.1
[2025-07-26 02:14:09] -rw-rw-r-- 1 m m         0 Jul 26 02:07 boinc_lockfile
[2025-07-26 02:14:09] -rw-rw-r-- 1 m m      2562 Jul 26 02:08 pandaJob.out
[2025-07-26 02:14:09] -rw------- 1 m m    979993 Jul 26 02:09 agis_schedconf.cvmfs.json
[2025-07-26 02:14:09] -rw------- 1 m m   1593052 Jul 26 02:09 agis_ddmendpoints.agis.ALL.json
[2025-07-26 02:14:09] drwx------ 4 m m      4096 Jul 26 02:09 pilot3
[2025-07-26 02:14:09] -rw------- 1 m m       963 Jul 26 02:11 memory_monitor_summary.json
[2025-07-26 02:14:09] -rw-rw-r-- 1 m m       524 Jul 26 02:11 boinc_task_state.xml
[2025-07-26 02:14:09] -rw------- 1 m m     42900 Jul 26 02:11 log.45743349._025257.job.log.tgz.1
[2025-07-26 02:14:09] -rw------- 1 m m        95 Jul 26 02:13 pilot_heartbeat.json
[2025-07-26 02:14:09] -rw------- 1 m m     11770 Jul 26 02:13 heartbeat.json
[2025-07-26 02:14:09] -rw-rw-r-- 1 m m        23 Jul 26 02:13 wrapper_checkpoint.txt
[2025-07-26 02:14:09] -rw-rw-r-- 1 m m      8192 Jul 26 02:13 boinc_mmap_file
[2025-07-26 02:14:09] -rw------- 1 m m       744 Jul 26 02:14 pilotlog.txt
[2025-07-26 02:14:09] -rw------- 1 m m     81084 Jul 26 02:14 log.45743349._025257.job.log.1
[2025-07-26 02:14:09] -rw------- 1 m m       188 Jul 26 02:14 output.list
[2025-07-26 02:14:09] -rw-rw-r-- 1 m m       620 Jul 26 02:14 runtime_log
[2025-07-26 02:14:09] -rw------- 1 m m    143360 Jul 26 02:14 result.tar.gz
[2025-07-26 02:14:09] -rw------- 1 m m       629 Jul 26 02:14 SOfNDmcacz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0BQLDm7cwoFm.diag
[2025-07-26 02:14:09] -rw-rw-r-- 1 m m      8421 Jul 26 02:14 runtime_log.err
[2025-07-26 02:14:09] -rw-rw-r-- 1 m m     21975 Jul 26 02:14 stderr.txt
[2025-07-26 02:14:09] No HITS result produced
[2025-07-26 02:14:09]  *** Contents of shared directory: ***
[2025-07-26 02:14:09] total 224776
[2025-07-26 02:14:09] -rw-r--r-- 2 m m     15095 Jul 26 02:07 start_atlas.sh
[2025-07-26 02:14:09] -rw-r--r-- 2 m m    542889 Jul 26 02:07 input.tar.gz
[2025-07-26 02:14:09] -rw-r--r-- 2 m m 229461302 Jul 26 02:07 ATLAS.root_0
[2025-07-26 02:14:09] -rw------- 1 m m    143360 Jul 26 02:14 result.tar.gz
02:14:11 (4039): run_atlas exited; CPU time 33.401170
02:14:11 (4039): called boinc_finish(0)

</stderr_txt>
]]>

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