Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:33:44 (3523890): wrapper (7.7.26015): starting
19:33:44 (3523890): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 19:33:44] Arguments: --nthreads 8
[2025-07-25 19:33:44] Threads: 8
[2025-07-25 19:33:44] Checking for CVMFS
[2025-07-25 19:33:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 19:33:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 19:33:45] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 19:33:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 19:33:45] 2.13.0.0 3724680 16731 239928 148757 2 429 24762294 32935937 22569 16776704 0 80946429 99.526 120032010 20239 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 19:33:45] CVMFS is ok
[2025-07-25 19:33:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 19:33:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 19:33:45] Further information can be found at the LHC@home message board.
[2025-07-25 19:33:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 19:33:45] Checking for apptainer binary...
[2025-07-25 19:33:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 19:33:45] Running /usr/bin/apptainer --version
[2025-07-25 19:33:45] apptainer version 1.4.1-1.el9
[2025-07-25 19:33:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 19:33:46] c7-4-31.aglt2.org
[2025-07-25 19:33:46] apptainer works
[2025-07-25 19:33:46] Set ATHENA_PROC_NUMBER=8
[2025-07-25 19:33:46] Set ATHENA_CORE_NUMBER=8
[2025-07-25 19:33:46] Starting ATLAS job with PandaID=6741919643
[2025-07-25 19:33:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:40:10 (3523890): BOINC client no longer exists - exiting
20:40:10 (3523890): timer handler: client dead, exiting
20:45:11 (3946363): wrapper (7.7.26015): starting
20:45:11 (3946363): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 20:45:12] Arguments: --nthreads 8
[2025-07-25 20:45:12] Threads: 8
[2025-07-25 20:45:12] This job has been restarted, cleaning up previous attempt
[2025-07-25 20:45:12] Checking for CVMFS
[2025-07-25 20:45:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 20:45:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 20:45:12] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 20:45:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 20:45:12] 2.13.0.0 3724680 16803 247016 148758 3 576 26077402 32935937 21678 16776704 0 81265367 99.540 120234571 20199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.230.184:3128 1
[2025-07-25 20:45:12] CVMFS is ok
[2025-07-25 20:45:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 20:45:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 20:45:12] Further information can be found at the LHC@home message board.
[2025-07-25 20:45:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 20:45:12] Checking for apptainer binary...
[2025-07-25 20:45:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 20:45:12] Running /usr/bin/apptainer --version
[2025-07-25 20:45:12] apptainer version 1.4.1-1.el9
[2025-07-25 20:45:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 20:45:12] c7-4-31.aglt2.org
[2025-07-25 20:45:12] apptainer works
[2025-07-25 20:45:12] Set ATHENA_PROC_NUMBER=8
[2025-07-25 20:45:12] Set ATHENA_CORE_NUMBER=8
[2025-07-25 20:45:12] Starting ATLAS job with PandaID=6741919643
[2025-07-25 20:45:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 23:01:55]  *** The last 200 lines of the pilot log: ***
[2025-07-25 23:01:55] 2025-07-26 03:01:18,489 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 23:01:55] 2025-07-26 03:01:20,996 | INFO     | monitor loop #527: job 0:6741919643 is in state 'finished'
[2025-07-25 23:01:55] 2025-07-26 03:01:20,996 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 23:01:55] 2025-07-26 03:01:22,393 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-25 23:01:55] 2025-07-26 03:01:22,409 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3090.5561562500006
[2025-07-25 23:01:55] 2025-07-26 03:01:22,432 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6741919643/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 23:01:55] 2025-07-26 03:01:22,432 | INFO     | extracted standard info from prmon json
[2025-07-25 23:01:55] 2025-07-26 03:01:22,432 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 23:01:55] 2025-07-26 03:01:22,432 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 23:01:55] 2025-07-26 03:01:22,433 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 23:01:55] 2025-07-26 03:01:22,433 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 23:01:55] 2025-07-26 03:01:22,435 | INFO     | fitting pss+swap vs Time
[2025-07-25 23:01:55] 2025-07-26 03:01:22,435 | INFO     | sum of square deviations: 729490720.0751848
[2025-07-25 23:01:55] 2025-07-26 03:01:22,435 | INFO     | sum of deviations: 13091468644.684206
[2025-07-25 23:01:55] 2025-07-26 03:01:22,435 | INFO     | mean x: 1753494782.1203008
[2025-07-25 23:01:55] 2025-07-26 03:01:22,435 | INFO     | mean y: 2221766.8947368423
[2025-07-25 23:01:55] 2025-07-26 03:01:22,436 | INFO     | -- intersect: -31466063335.319233
[2025-07-25 23:01:55] 2025-07-26 03:01:22,436 | INFO     | intersect: -31466063335.319233
[2025-07-25 23:01:55] 2025-07-26 03:01:22,436 | INFO     | chi2: 1.5704271480288299
[2025-07-25 23:01:55] 2025-07-26 03:01:22,436 | INFO     | sum of square deviations: 650267640.2421875
[2025-07-25 23:01:55] 2025-07-26 03:01:22,436 | INFO     | sum of deviations: 12436994499.15625
[2025-07-25 23:01:55] 2025-07-26 03:01:22,436 | INFO     | mean x: 1753494629.6171875
[2025-07-25 23:01:55] 2025-07-26 03:01:22,437 | INFO     | mean y: 2220484.65625
[2025-07-25 23:01:55] 2025-07-26 03:01:22,437 | INFO     | -- intersect: -33535052037.049854
[2025-07-25 23:01:55] 2025-07-26 03:01:22,437 | INFO     | intersect: -33535052037.049854
[2025-07-25 23:01:55] 2025-07-26 03:01:22,437 | INFO     | chi2: 1.5711538848385074
[2025-07-25 23:01:55] 2025-07-26 03:01:22,437 | INFO     | current chi2=1.5711538848385074 (change=-0.046276378410146785 %)
[2025-07-25 23:01:55] 2025-07-26 03:01:22,437 | INFO     | right removable region: 127
[2025-07-25 23:01:55] 2025-07-26 03:01:22,437 | INFO     | sum of square deviations: 650265750.0
[2025-07-25 23:01:55] 2025-07-26 03:01:22,438 | INFO     | sum of deviations: -6892806549.125
[2025-07-25 23:01:55] 2025-07-26 03:01:22,438 | INFO     | mean x: 1753494934.625
[2025-07-25 23:01:55] 2025-07-26 03:01:22,438 | INFO     | mean y: 2259767.0390625
[2025-07-25 23:01:55] 2025-07-26 03:01:22,438 | INFO     | -- intersect: 18589278027.25147
[2025-07-25 23:01:55] 2025-07-26 03:01:22,438 | INFO     | intersect: 18589278027.25147
[2025-07-25 23:01:55] 2025-07-26 03:01:22,438 | INFO     | chi2: 0.06944326905954869
[2025-07-25 23:01:55] 2025-07-26 03:01:22,438 | INFO     | current chi2=0.06944326905954869 (change=95.57806491394952 %)
[2025-07-25 23:01:55] 2025-07-26 03:01:22,438 | INFO     | sum of square deviations: 576994379.918698
[2025-07-25 23:01:55] 2025-07-26 03:01:22,439 | INFO     | sum of deviations: -7315062241.813007
[2025-07-25 23:01:55] 2025-07-26 03:01:22,439 | INFO     | mean x: 1753495087.1300814
[2025-07-25 23:01:55] 2025-07-26 03:01:22,439 | INFO     | mean y: 2260613.300813008
[2025-07-25 23:01:55] 2025-07-26 03:01:22,439 | INFO     | -- intersect: 22232850978.6303
[2025-07-25 23:01:55] 2025-07-26 03:01:22,439 | INFO     | intersect: 22232850978.6303
[2025-07-25 23:01:55] 2025-07-26 03:01:22,440 | INFO     | chi2: 0.060559256126288236
[2025-07-25 23:01:55] 2025-07-26 03:01:22,440 | INFO     | current chi2=0.060559256126288236 (change=12.793195155663353 %)
[2025-07-25 23:01:55] 2025-07-26 03:01:22,440 | INFO     | left removable region: 20
[2025-07-25 23:01:55] 2025-07-26 03:01:22,440 | INFO     | sum of square deviations: 379844571.8691581
[2025-07-25 23:01:55] 2025-07-26 03:01:22,440 | INFO     | sum of deviations: -4091087248.2523365
[2025-07-25 23:01:55] 2025-07-26 03:01:22,440 | INFO     | mean x: 1753495209.1028037
[2025-07-25 23:01:55] 2025-07-26 03:01:22,440 | INFO     | mean y: 2252280.8411214952
[2025-07-25 23:01:55] 2025-07-26 03:01:22,440 | INFO     | -- intersect: 18888139880.94907
[2025-07-25 23:01:55] 2025-07-26 03:01:22,440 | INFO     | intersect: 18888139880.94907
[2025-07-25 23:01:55] 2025-07-26 03:01:22,441 | INFO     | chi2: 0.048345078692545444
[2025-07-25 23:01:55] 2025-07-26 03:01:22,441 | INFO     | -- intersect: 18888139880.94907
[2025-07-25 23:01:55] 2025-07-26 03:01:22,441 | INFO     | current memory leak: -10.77 B/s (using 107 data points, chi2=0.05)
[2025-07-25 23:01:55] 2025-07-26 03:01:22,441 | INFO     | could have reported an average CPU frequency of 3062 MHz (8 samples)
[2025-07-25 23:01:55] 2025-07-26 03:01:22,441 | INFO     | ..............................
[2025-07-25 23:01:55] 2025-07-26 03:01:22,441 | INFO     | . Timing measurements:
[2025-07-25 23:01:55] 2025-07-26 03:01:22,441 | INFO     | . get job = 0 s
[2025-07-25 23:01:55] 2025-07-26 03:01:22,441 | INFO     | . initial setup = 1 s
[2025-07-25 23:01:55] 2025-07-26 03:01:22,441 | INFO     | . payload setup = 8 s
[2025-07-25 23:01:55] 2025-07-26 03:01:22,442 | INFO     | . stage-in = 0 s
[2025-07-25 23:01:55] 2025-07-26 03:01:22,442 | INFO     | . payload execution = 8105 s
[2025-07-25 23:01:55] 2025-07-26 03:01:22,442 | INFO     | . stage-out = 2 s
[2025-07-25 23:01:55] 2025-07-26 03:01:22,442 | INFO     | . log creation = 0 s
[2025-07-25 23:01:55] 2025-07-26 03:01:22,442 | INFO     | ..............................
[2025-07-25 23:01:55] 2025-07-26 03:01:22,511 | INFO     | 
[2025-07-25 23:01:55] 2025-07-26 03:01:22,511 | INFO     | job summary report
[2025-07-25 23:01:55] 2025-07-26 03:01:22,511 | INFO     | --------------------------------------------------
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | PanDA job id: 6741919643
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | task id: 45697472
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | errors: (none)
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | pilot state: finished 
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | transexitcode: 0
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | exeerrorcode: 0
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | exeerrordiag: 
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | exitcode: 0
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | exitmsg: OK
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | cpuconsumptiontime: 46178 s
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | nevents: 400
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | neventsw: 0
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | pid: 3978479
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | pgrp: 3978479
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | corecount: 8
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | event service: False
[2025-07-25 23:01:55] 2025-07-26 03:01:22,512 | INFO     | sizes: {0: 2397543, 6: 2397805, 11: 2397833, 8118: 2425609, 8121: 2434607, 8124: 2434663, 8141: 2434985}
[2025-07-25 23:01:55] 2025-07-26 03:01:22,513 | INFO     | --------------------------------------------------
[2025-07-25 23:01:55] 2025-07-26 03:01:22,513 | INFO     | 
[2025-07-25 23:01:55] 2025-07-26 03:01:22,513 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-25 23:01:55] 2025-07-26 03:01:22,533 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,534 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,534 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,534 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,534 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,534 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,534 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,534 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,534 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,534 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,534 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,534 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,535 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,535 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,535 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,535 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,535 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,535 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 23:01:55] 2025-07-26 03:01:22,535 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,535 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 23:01:55] 2025-07-26 03:01:22,535 | INFO     | job 6741919643 has completed (purged errors)
[2025-07-25 23:01:55] 2025-07-26 03:01:22,535 | INFO     | overall cleanup function is called
[2025-07-25 23:01:55] 2025-07-26 03:01:23,548 | INFO     | --- collectZombieJob: --- 10, [3978479]
[2025-07-25 23:01:55] 2025-07-26 03:01:23,548 | INFO     | zombie collector waiting for pid 3978479
[2025-07-25 23:01:55] 2025-07-26 03:01:23,548 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 23:01:55] 2025-07-26 03:01:23,548 | INFO     | collected zombie processes
[2025-07-25 23:01:55] 2025-07-26 03:01:23,548 | INFO     | will attempt to kill all subprocesses of pid=3978479
[2025-07-25 23:01:55] 2025-07-26 03:01:24,282 | INFO     | process IDs to be killed: [3978479] (in reverse order)
[2025-07-25 23:01:55] 2025-07-26 03:01:24,497 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 23:01:55] 2025-07-26 03:01:24,498 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 23:01:55] 2025-07-26 03:01:24,594 | INFO     | did not find any defunct processes belonging to 3978479
[2025-07-25 23:01:55] 2025-07-26 03:01:24,622 | INFO     | did not find any defunct processes belonging to 3978479
[2025-07-25 23:01:55] 2025-07-26 03:01:24,622 | INFO     | ready for new job
[2025-07-25 23:01:55] 2025-07-26 03:01:24,622 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 23:01:55] 2025-07-26 03:01:24,624 | INFO     | ***************************************
[2025-07-25 23:01:55] 2025-07-26 03:01:24,625 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 23:01:55] 2025-07-26 03:01:24,625 | INFO     | ***************************************
[2025-07-25 23:01:55] 2025-07-26 03:01:24,625 | INFO     | 
[2025-07-25 23:01:55] 2025-07-26 03:01:24,651 | INFO     | architecture information:
[2025-07-25 23:01:55] 2025-07-26 03:01:24,652 | INFO     | executing command: cat /etc/os-release
[2025-07-25 23:01:55] 2025-07-26 03:01:24,678 | INFO     | cat /etc/os-release:
[2025-07-25 23:01:55] NAME="CentOS Linux"
[2025-07-25 23:01:55] VERSION="7 (Core)"
[2025-07-25 23:01:55] ID="centos"
[2025-07-25 23:01:55] ID_LIKE="rhel fedora"
[2025-07-25 23:01:55] VERSION_ID="7"
[2025-07-25 23:01:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 23:01:55] ANSI_COLOR="0;31"
[2025-07-25 23:01:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 23:01:55] HOME_URL="https://www.centos.org/"
[2025-07-25 23:01:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 23:01:55] 
[2025-07-25 23:01:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 23:01:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 23:01:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 23:01:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 23:01:55] 
[2025-07-25 23:01:55] 2025-07-26 03:01:24,678 | INFO     | ***************************************
[2025-07-25 23:01:55] 2025-07-26 03:01:25,182 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-25 23:01:55] 2025-07-26 03:01:25,222 | INFO     | sufficient remaining disk space (75144101888 B)
[2025-07-25 23:01:55] 2025-07-26 03:01:25,222 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 23:01:55] 2025-07-26 03:01:25,223 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 23:01:55] 2025-07-26 03:01:25,223 | INFO     | update_server=False
[2025-07-25 23:01:55] 2025-07-26 03:01:25,223 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 23:01:55] 2025-07-26 03:01:25,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 23:01:55] 2025-07-26 03:01:25,226 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 23:01:55] 2025-07-26 03:01:25,226 | INFO     | aborting loop
[2025-07-25 23:01:55] 2025-07-26 03:01:25,244 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 23:01:55] 2025-07-26 03:01:25,809 | INFO     | all job control threads have been joined
[2025-07-25 23:01:55] 2025-07-26 03:01:25,949 | INFO     | all data control threads have been joined
[2025-07-25 23:01:55] 2025-07-26 03:01:26,229 | INFO     | [job] retrieve thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:26,232 | INFO     | [job] job monitor thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:26,571 | INFO     | [payload] failed_post thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:26,613 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:26,701 | INFO     | all payload control threads have been joined
[2025-07-25 23:01:55] 2025-07-26 03:01:26,810 | INFO     | [job] control thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:26,955 | INFO     | [data] control thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:26,975 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:27,205 | INFO     | [data] copytool_in thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:27,246 | INFO     | [job] validate thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:27,252 | INFO     | [data] copytool_out thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:27,489 | INFO     | [payload] validate_post thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:27,532 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 23:01:55] 2025-07-26 03:01:27,590 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:27,712 | INFO     | [payload] control thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:28,538 | INFO     | [job] queue monitor thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:29,232 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:35,767 | INFO     | job.realtimelogging is not enabled
[2025-07-25 23:01:55] 2025-07-26 03:01:36,774 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 23:01:55] 2025-07-26 03:01:38,779 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139866012616512)>', '<ExcThread(monitor, started 139865517704960)>']
[2025-07-25 23:01:55] 2025-07-26 03:01:43,805 | INFO     | all workflow threads have been joined
[2025-07-25 23:01:55] 2025-07-26 03:01:43,805 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 23:01:55] 2025-07-26 03:01:43,805 | INFO     | traces error code: 0
[2025-07-25 23:01:55] 2025-07-26 03:01:43,805 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 23:01:55] 2025-07-26 03:01:55,091 | INFO     | PID=3957235 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 23:01:55] 2025-07-26 03:01:55,091 | INFO     | .. there are 36 such processes running
[2025-07-25 23:01:55] 2025-07-26 03:01:55,092 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 23:01:55] 2025-07-26 03:01:55,092 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 23:01:55] 2025-07-26 03:01:55,092 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 23:01:55] 2025-07-26 03:01:55,092 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 23:01:55] 2025-07-26 03:01:55,093 | INFO     | [monitor] control thread has ended
[2025-07-25 23:01:55] 2025-07-26 03:01:55,264 [wrapper] ==== pilot stdout END ====
[2025-07-25 23:01:55] 2025-07-26 03:01:55,268 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 23:01:55] 2025-07-26 03:01:55,273 [wrapper] pilotpid: 3957235
[2025-07-25 23:01:55] 2025-07-26 03:01:55,275 [wrapper] Pilot exit status: 0
[2025-07-25 23:01:55] 2025-07-26 03:01:55,352 [wrapper] pandaids: 6741919643 6741919643
[2025-07-25 23:01:55] 2025-07-26 03:01:55,560 [wrapper] cleanup supervisor_pilot  543391 3957236
[2025-07-25 23:01:55] 2025-07-26 03:01:55,576 [wrapper] Test setup, not cleaning
[2025-07-25 23:01:55] 2025-07-26 03:01:55,582 [wrapper] apfmon messages muted
[2025-07-25 23:01:55] 2025-07-26 03:01:55,590 [wrapper] ==== wrapper stdout END ====
[2025-07-25 23:01:55] 2025-07-26 03:01:55,593 [wrapper] ==== wrapper stderr END ====
[2025-07-25 23:01:55]  *** Error codes and diagnostics ***
[2025-07-25 23:01:55]     "exeErrorCode": 0,
[2025-07-25 23:01:55]     "exeErrorDiag": "",
[2025-07-25 23:01:55]     "pilotErrorCode": 0,
[2025-07-25 23:01:55]     "pilotErrorDiag": "",
[2025-07-25 23:01:55]  *** Listing of results directory ***
[2025-07-25 23:01:55] total 928988
[2025-07-25 23:01:55] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-25 23:01:55] -rw-r--r--. 1 boincer umatlas    530466 Jul 23 06:29 pilot3.tar.gz
[2025-07-25 23:01:55] -rwx------. 1 boincer umatlas     36292 Jul 23 06:36 runpilot2-wrapper.sh
[2025-07-25 23:01:55] -rw-r--r--. 1 boincer umatlas      5112 Jul 23 06:36 queuedata.json
[2025-07-25 23:01:55] -rw-r--r--. 1 boincer umatlas       100 Jul 25 19:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 23:01:55] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 19:33 run_atlas
[2025-07-25 23:01:55] -rw-r--r--. 1 boincer umatlas       105 Jul 25 19:33 job.xml
[2025-07-25 23:01:55] -rw-r--r--. 3 boincer umatlas 333292518 Jul 25 19:33 EVNT.45697470._000073.pool.root.1
[2025-07-25 23:01:55] -rw-r--r--. 3 boincer umatlas 333292518 Jul 25 19:33 ATLAS.root_0
[2025-07-25 23:01:55] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 19:33 shared
[2025-07-25 23:01:55] -rw-r--r--. 2 boincer umatlas    542903 Jul 25 19:33 input.tar.gz
[2025-07-25 23:01:55] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 19:33 start_atlas.sh
[2025-07-25 23:01:55] -rw-r--r--. 1 boincer umatlas         0 Jul 25 19:33 boinc_lockfile
[2025-07-25 23:01:55] -rw-r--r--. 1 boincer umatlas      2611 Jul 25 20:45 pandaJob.out
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas    979993 Jul 25 20:45 agis_schedconf.cvmfs.json
[2025-07-25 23:01:55] -rw-r--r--. 1 boincer umatlas      6935 Jul 25 22:58 init_data.xml
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas 278688314 Jul 25 23:00 HITS.45697472._005249.pool.root.1
[2025-07-25 23:01:55] -rw-r--r--. 1 boincer umatlas       532 Jul 25 23:00 boinc_task_state.xml
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas      1037 Jul 25 23:00 memory_monitor_summary.json
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas   1593052 Jul 25 23:01 agis_ddmendpoints.agis.ALL.json
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas    352168 Jul 25 23:01 log.45697472._005249.job.log.tgz.1
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas      7782 Jul 25 23:01 heartbeat.json
[2025-07-25 23:01:55] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 23:01 boinc_mmap_file
[2025-07-25 23:01:55] -rw-r--r--. 1 boincer umatlas        28 Jul 25 23:01 wrapper_checkpoint.txt
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas       823 Jul 25 23:01 pilotlog.txt
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas        96 Jul 25 23:01 pilot_heartbeat.json
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas    714404 Jul 25 23:01 log.45697472._005249.job.log.1
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas       357 Jul 25 23:01 output.list
[2025-07-25 23:01:55] -rw-r--r--. 1 boincer umatlas       620 Jul 25 23:01 runtime_log
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas   1085440 Jul 25 23:01 result.tar.gz
[2025-07-25 23:01:55] -rw-r--r--. 1 boincer umatlas      8740 Jul 25 23:01 runtime_log.err
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas       778 Jul 25 23:01 6f8NDmE1ly7n9Rq4apOajLDm4fhM0noT9bVof3QYDmW8vKDmbRHI0m.diag
[2025-07-25 23:01:55] -rw-r--r--. 1 boincer umatlas     23482 Jul 25 23:01 stderr.txt
[2025-07-25 23:01:55] HITS file was successfully produced:
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas 278688314 Jul 25 23:00 shared/HITS.pool.root.1
[2025-07-25 23:01:55]  *** Contents of shared directory: ***
[2025-07-25 23:01:55] total 599256
[2025-07-25 23:01:55] -rw-r--r--. 3 boincer umatlas 333292518 Jul 25 19:33 ATLAS.root_0
[2025-07-25 23:01:55] -rw-r--r--. 2 boincer umatlas    542903 Jul 25 19:33 input.tar.gz
[2025-07-25 23:01:55] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 19:33 start_atlas.sh
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas 278688314 Jul 25 23:00 HITS.pool.root.1
[2025-07-25 23:01:55] -rw-------. 1 boincer umatlas   1085440 Jul 25 23:01 result.tar.gz
23:01:57 (3946363): run_atlas exited; CPU time 46436.476544
23:01:57 (3946363): called boinc_finish(0)

</stderr_txt>
]]>

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