Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:23:38 (63545): wrapper (7.7.26015): starting
14:23:38 (63545): wrapper: running run_atlas (--nthreads 3)
[2025-07-26 14:23:38] Arguments: --nthreads 3
[2025-07-26 14:23:38] Threads: 3
[2025-07-26 14:23:38] Checking for CVMFS
[2025-07-26 14:23:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 14:23:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 14:23:38] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 14:23:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 14:23:38] 2.9.2.0 3466416 2760 79436 148777 1 56 34844142 36864001 0 130560 0 2113003 99.990 100993 4258 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-26 14:23:38] CVMFS is ok
[2025-07-26 14:23:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 14:23:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 14:23:38] Further information can be found at the LHC@home message board.
[2025-07-26 14:23:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 14:23:38] Checking for apptainer binary...
[2025-07-26 14:23:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 14:23:38] Running /usr/bin/apptainer --version
[2025-07-26 14:23:38] apptainer version 1.4.1-1.1
[2025-07-26 14:23:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 14:23:38] magicA252
[2025-07-26 14:23:38] apptainer works
[2025-07-26 14:23:38] Set ATHENA_PROC_NUMBER=3
[2025-07-26 14:23:38] Set ATHENA_CORE_NUMBER=3
[2025-07-26 14:23:38] Starting ATLAS job with PandaID=6745059218
[2025-07-26 14:23:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 15:56:24]  *** The last 200 lines of the pilot log: ***
[2025-07-26 15:56:24] 2025-07-26 13:55:44,523 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 15:56:24] 2025-07-26 13:55:44,523 | INFO     | summary of transferred files:
[2025-07-26 15:56:24] 2025-07-26 13:55:44,523 | INFO     |  -- lfn=log.45743349._024568.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 15:56:24] 2025-07-26 13:55:44,523 | INFO     | stage-out finished correctly
[2025-07-26 15:56:24] 2025-07-26 13:55:46,100 | WARNING  | process 73674 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 15:56:24] 2025-07-26 13:55:46,100 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745059218/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 15:56:24] 2025-07-26 13:55:46,100 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745059218/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 15:56:24] 2025-07-26 13:55:46,101 | INFO     | reaping zombies for max 20 seconds
[2025-07-26 15:56:24] 2025-07-26 13:55:46,106 | INFO     | checking for looping job (in state=finished)
[2025-07-26 15:56:24] 2025-07-26 13:55:46,106 | INFO     | using looping job limit: 7200 s
[2025-07-26 15:56:24] 2025-07-26 13:55:46,106 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2377884 B
[2025-07-26 15:56:24] 2025-07-26 13:55:46,106 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16757 B
[2025-07-26 15:56:24] 2025-07-26 13:55:46,106 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-26 15:56:24] 2025-07-26 13:55:46,116 | INFO     | sufficient remaining disk space (365375258624 B)
[2025-07-26 15:56:24] 2025-07-26 13:55:46,116 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-26 15:56:24] 2025-07-26 13:55:46,116 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6745059218: 2681355 B (within 2537553920 B limit)
[2025-07-26 15:56:24] 2025-07-26 13:55:46,116 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6745059218/HITS.45743349._024568.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-26 15:56:24] 2025-07-26 13:55:46,116 | INFO     | total size of present files: 0 B (workdir size: 2681355 B)
[2025-07-26 15:56:24] 2025-07-26 13:55:46,116 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6745059218/HITS.45743349._024568.pool.root.1 since it does not exist
[2025-07-26 15:56:24] 2025-07-26 13:55:46,151 | INFO     | number of running child processes to parent process 73674: 1
[2025-07-26 15:56:24] 2025-07-26 13:55:46,152 | INFO     | maximum number of monitored processes: 6
[2025-07-26 15:56:24] 2025-07-26 13:55:46,891 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 15:56:24] 2025-07-26 13:55:48,656 | INFO     | monitor loop #425: job 0:6745059218 is in state 'finished'
[2025-07-26 15:56:24] 2025-07-26 13:55:48,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:56:24] 2025-07-26 13:55:49,656 | INFO     | job 6745059218 has state=finished
[2025-07-26 15:56:24] 2025-07-26 13:55:49,657 | INFO     | preparing for final server update for job 6745059218 in state='finished'
[2025-07-26 15:56:24] 2025-07-26 13:55:49,657 | INFO     | this job has now completed (state=finished)
[2025-07-26 15:56:24] 2025-07-26 13:55:49,657 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 15:56:24] 2025-07-26 13:55:49,657 | INFO     | log transfer has been attempted: DONE
[2025-07-26 15:56:24] 2025-07-26 13:55:49,657 | INFO     | job 6745059218 has finished - writing final server update
[2025-07-26 15:56:24] 2025-07-26 13:55:49,657 | INFO     | total number of processed events: 400 (read)
[2025-07-26 15:56:24] 2025-07-26 13:55:49,658 | INFO     | executing command: lscpu
[2025-07-26 15:56:24] 2025-07-26 13:55:49,673 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 15:56:24] 2025-07-26 13:55:50,169 | INFO     | PID=67182 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 15:56:24] 2025-07-26 13:55:51,159 | INFO     | monitor loop #426: job 0:6745059218 is in state 'finished'
[2025-07-26 15:56:24] 2025-07-26 13:55:51,159 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:56:24] 2025-07-26 13:55:52,010 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 15:56:24] 2025-07-26 13:55:52,011 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3689.2116666666657
[2025-07-26 15:56:24] 2025-07-26 13:55:52,012 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745059218/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 15:56:24] 2025-07-26 13:55:52,012 | INFO     | extracted standard info from prmon json
[2025-07-26 15:56:24] 2025-07-26 13:55:52,012 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 15:56:24] 2025-07-26 13:55:52,012 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 15:56:24] 2025-07-26 13:55:52,012 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 15:56:24] 2025-07-26 13:55:52,012 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 15:56:24] 2025-07-26 13:55:52,013 | INFO     | fitting pss+swap vs Time
[2025-07-26 15:56:24] 2025-07-26 13:55:52,013 | INFO     | sum of square deviations: 183761585.0
[2025-07-26 15:56:24] 2025-07-26 13:55:52,013 | INFO     | sum of deviations: -11919662666.0
[2025-07-26 15:56:24] 2025-07-26 13:55:52,013 | INFO     | mean x: 1753535480.5
[2025-07-26 15:56:24] 2025-07-26 13:55:52,013 | INFO     | mean y: 2490824.3095238097
[2025-07-26 15:56:24] 2025-07-26 13:55:52,013 | INFO     | -- intersect: 113745259207.71361
[2025-07-26 15:56:24] 2025-07-26 13:55:52,013 | INFO     | intersect: 113745259207.71361
[2025-07-26 15:56:24] 2025-07-26 13:55:52,013 | INFO     | chi2: 0.04769852303137177
[2025-07-26 15:56:24] 2025-07-26 13:55:52,013 | INFO     | -- intersect: 113745259207.71361
[2025-07-26 15:56:24] 2025-07-26 13:55:52,013 | INFO     | current memory leak: -64.86 B/s (using 84 data points, chi2=0.05)
[2025-07-26 15:56:24] 2025-07-26 13:55:52,013 | INFO     | could have reported an average CPU frequency of 3977 MHz (7 samples)
[2025-07-26 15:56:24] 2025-07-26 13:55:52,013 | INFO     | ..............................
[2025-07-26 15:56:24] 2025-07-26 13:55:52,014 | INFO     | . Timing measurements:
[2025-07-26 15:56:24] 2025-07-26 13:55:52,014 | INFO     | . get job = 0 s
[2025-07-26 15:56:24] 2025-07-26 13:55:52,014 | INFO     | . initial setup = 1 s
[2025-07-26 15:56:24] 2025-07-26 13:55:52,014 | INFO     | . payload setup = 3 s
[2025-07-26 15:56:24] 2025-07-26 13:55:52,014 | INFO     | . stage-in = 0 s
[2025-07-26 15:56:24] 2025-07-26 13:55:52,014 | INFO     | . payload execution = 5500 s
[2025-07-26 15:56:24] 2025-07-26 13:55:52,014 | INFO     | . stage-out = 0 s
[2025-07-26 15:56:24] 2025-07-26 13:55:52,014 | INFO     | . log creation = 0 s
[2025-07-26 15:56:24] 2025-07-26 13:55:52,014 | INFO     | ..............................
[2025-07-26 15:56:24] 2025-07-26 13:55:52,504 | INFO     | 
[2025-07-26 15:56:24] 2025-07-26 13:55:52,504 | INFO     | job summary report
[2025-07-26 15:56:24] 2025-07-26 13:55:52,504 | INFO     | --------------------------------------------------
[2025-07-26 15:56:24] 2025-07-26 13:55:52,504 | INFO     | PanDA job id: 6745059218
[2025-07-26 15:56:24] 2025-07-26 13:55:52,504 | INFO     | task id: 45743349
[2025-07-26 15:56:24] 2025-07-26 13:55:52,504 | INFO     | errors: (none)
[2025-07-26 15:56:24] 2025-07-26 13:55:52,504 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 15:56:24] 2025-07-26 13:55:52,504 | INFO     | pilot state: finished 
[2025-07-26 15:56:24] 2025-07-26 13:55:52,504 | INFO     | transexitcode: 0
[2025-07-26 15:56:24] 2025-07-26 13:55:52,504 | INFO     | exeerrorcode: 0
[2025-07-26 15:56:24] 2025-07-26 13:55:52,504 | INFO     | exeerrordiag: 
[2025-07-26 15:56:24] 2025-07-26 13:55:52,504 | INFO     | exitcode: 0
[2025-07-26 15:56:24] 2025-07-26 13:55:52,504 | INFO     | exitmsg: OK
[2025-07-26 15:56:24] 2025-07-26 13:55:52,505 | INFO     | cpuconsumptiontime: 15897 s
[2025-07-26 15:56:24] 2025-07-26 13:55:52,505 | INFO     | nevents: 400
[2025-07-26 15:56:24] 2025-07-26 13:55:52,505 | INFO     | neventsw: 0
[2025-07-26 15:56:24] 2025-07-26 13:55:52,505 | INFO     | pid: 73674
[2025-07-26 15:56:24] 2025-07-26 13:55:52,505 | INFO     | pgrp: 73674
[2025-07-26 15:56:24] 2025-07-26 13:55:52,505 | INFO     | corecount: 3
[2025-07-26 15:56:24] 2025-07-26 13:55:52,505 | INFO     | event service: False
[2025-07-26 15:56:24] 2025-07-26 13:55:52,505 | INFO     | sizes: {0: 2397425, 2: 2397687, 10: 2397715, 5506: 2424436, 5507: 2433440, 5509: 2433524, 5514: 2433846}
[2025-07-26 15:56:24] 2025-07-26 13:55:52,505 | INFO     | --------------------------------------------------
[2025-07-26 15:56:24] 2025-07-26 13:55:52,505 | INFO     | 
[2025-07-26 15:56:24] 2025-07-26 13:55:52,505 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-26 15:56:24] 2025-07-26 13:55:52,519 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,519 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,519 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,519 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,519 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,519 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | job 6745059218 has completed (purged errors)
[2025-07-26 15:56:24] 2025-07-26 13:55:52,520 | INFO     | overall cleanup function is called
[2025-07-26 15:56:24] 2025-07-26 13:55:53,527 | INFO     | --- collectZombieJob: --- 10, [73674]
[2025-07-26 15:56:24] 2025-07-26 13:55:53,527 | INFO     | zombie collector waiting for pid 73674
[2025-07-26 15:56:24] 2025-07-26 13:55:53,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 15:56:24] 2025-07-26 13:55:53,527 | INFO     | collected zombie processes
[2025-07-26 15:56:24] 2025-07-26 13:55:53,527 | INFO     | will attempt to kill all subprocesses of pid=73674
[2025-07-26 15:56:24] 2025-07-26 13:55:53,565 | INFO     | process IDs to be killed: [73674] (in reverse order)
[2025-07-26 15:56:24] 2025-07-26 13:55:53,589 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 15:56:24] 2025-07-26 13:55:53,590 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 15:56:24] 2025-07-26 13:55:53,591 | INFO     | did not find any defunct processes belonging to 73674
[2025-07-26 15:56:24] 2025-07-26 13:55:53,591 | INFO     | did not find any defunct processes belonging to 73674
[2025-07-26 15:56:24] 2025-07-26 13:55:53,592 | INFO     | ready for new job
[2025-07-26 15:56:24] 2025-07-26 13:55:53,592 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 15:56:24] 2025-07-26 13:55:53,592 | INFO     | ***************************************
[2025-07-26 15:56:24] 2025-07-26 13:55:53,592 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 15:56:24] 2025-07-26 13:55:53,592 | INFO     | ***************************************
[2025-07-26 15:56:24] 2025-07-26 13:55:53,592 | INFO     | 
[2025-07-26 15:56:24] 2025-07-26 13:55:53,593 | INFO     | architecture information:
[2025-07-26 15:56:24] 2025-07-26 13:55:53,593 | INFO     | executing command: cat /etc/os-release
[2025-07-26 15:56:24] 2025-07-26 13:55:53,601 | INFO     | cat /etc/os-release:
[2025-07-26 15:56:24] NAME="CentOS Linux"
[2025-07-26 15:56:24] VERSION="7 (Core)"
[2025-07-26 15:56:24] ID="centos"
[2025-07-26 15:56:24] ID_LIKE="rhel fedora"
[2025-07-26 15:56:24] VERSION_ID="7"
[2025-07-26 15:56:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 15:56:24] ANSI_COLOR="0;31"
[2025-07-26 15:56:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 15:56:24] HOME_URL="https://www.centos.org/"
[2025-07-26 15:56:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 15:56:24] 
[2025-07-26 15:56:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 15:56:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 15:56:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 15:56:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 15:56:24] 
[2025-07-26 15:56:24] 2025-07-26 13:55:53,602 | INFO     | ***************************************
[2025-07-26 15:56:24] 2025-07-26 13:55:54,105 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-26 15:56:24] 2025-07-26 13:55:54,116 | INFO     | sufficient remaining disk space (365378404352 B)
[2025-07-26 15:56:24] 2025-07-26 13:55:54,117 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 15:56:24] 2025-07-26 13:55:54,117 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 15:56:24] 2025-07-26 13:55:54,117 | INFO     | update_server=False
[2025-07-26 15:56:24] 2025-07-26 13:55:54,117 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 15:56:24] 2025-07-26 13:55:54,206 | INFO     | all job control threads have been joined
[2025-07-26 15:56:24] 2025-07-26 13:55:54,668 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:56:24] 2025-07-26 13:55:54,668 | INFO     | aborting loop
[2025-07-26 15:56:24] 2025-07-26 13:55:54,761 | INFO     | all payload control threads have been joined
[2025-07-26 15:56:24] 2025-07-26 13:55:55,003 | INFO     | all data control threads have been joined
[2025-07-26 15:56:24] 2025-07-26 13:55:55,071 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 15:56:24] 2025-07-26 13:55:55,123 | INFO     | [job] retrieve thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:55:55,212 | INFO     | [job] control thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:55:55,619 | INFO     | [payload] failed_post thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:55:55,674 | INFO     | [job] job monitor thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:55:55,727 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:55:55,766 | INFO     | [payload] control thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:55:56,009 | INFO     | [data] control thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:55:56,083 | INFO     | [data] copytool_in thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:55:56,452 | INFO     | [payload] validate_post thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:55:56,488 | INFO     | [job] validate thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:55:56,596 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:55:56,601 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:55:57,056 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:56:24] 2025-07-26 13:55:57,073 | INFO     | [data] copytool_out thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:55:57,434 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 15:56:24] 2025-07-26 13:55:58,061 | INFO     | [job] queue monitor thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:56:01,440 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:56:04,292 | INFO     | job.realtimelogging is not enabled
[2025-07-26 15:56:24] 2025-07-26 13:56:05,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 15:56:24] 2025-07-26 13:56:07,254 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955688625984)>', '<ExcThread(monitor, started 139955015751424)>']
[2025-07-26 15:56:24] 2025-07-26 13:56:12,266 | INFO     | all workflow threads have been joined
[2025-07-26 15:56:24] 2025-07-26 13:56:12,266 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 15:56:24] 2025-07-26 13:56:12,266 | INFO     | traces error code: 0
[2025-07-26 15:56:24] 2025-07-26 13:56:12,266 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 15:56:24] 2025-07-26 13:56:24,281 | INFO     | PID=67182 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 15:56:24] 2025-07-26 13:56:24,281 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 15:56:24] 2025-07-26 13:56:24,281 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 15:56:24] 2025-07-26 13:56:24,281 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 15:56:24] 2025-07-26 13:56:24,281 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 15:56:24] 2025-07-26 13:56:24,281 | CRITICAL | thread 'MainThread' is not alive
[2025-07-26 15:56:24] 2025-07-26 13:56:24,281 | INFO     | [monitor] control thread has ended
[2025-07-26 15:56:24] 2025-07-26 13:56:24,326 [wrapper] ==== pilot stdout END ====
[2025-07-26 15:56:24] 2025-07-26 13:56:24,329 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 15:56:24] 2025-07-26 13:56:24,331 [wrapper] pilotpid: 67182
[2025-07-26 15:56:24] 2025-07-26 13:56:24,334 [wrapper] Pilot exit status: 0
[2025-07-26 15:56:24] 2025-07-26 13:56:24,341 [wrapper] pandaids: 6745059218
[2025-07-26 15:56:24] 2025-07-26 13:56:24,357 [wrapper] cleanup supervisor_pilot   85684 67183
[2025-07-26 15:56:24] 2025-07-26 13:56:24,360 [wrapper] Test setup, not cleaning
[2025-07-26 15:56:24] 2025-07-26 13:56:24,362 [wrapper] apfmon messages muted
[2025-07-26 15:56:24] 2025-07-26 13:56:24,365 [wrapper] ==== wrapper stdout END ====
[2025-07-26 15:56:24] 2025-07-26 13:56:24,367 [wrapper] ==== wrapper stderr END ====
[2025-07-26 15:56:24]  *** Error codes and diagnostics ***
[2025-07-26 15:56:24]     "exeErrorCode": 0,
[2025-07-26 15:56:24]     "exeErrorDiag": "",
[2025-07-26 15:56:24]     "pilotErrorCode": 0,
[2025-07-26 15:56:24]     "pilotErrorDiag": "",
[2025-07-26 15:56:24]  *** Listing of results directory ***
[2025-07-26 15:56:24] total 435568
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc    530466 Jul 25 19:32 pilot3.tar.gz
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc      5112 Jul 25 19:33 queuedata.json
[2025-07-26 15:56:24] -rwx------ 1 boinc boinc     36292 Jul 25 19:34 runpilot2-wrapper.sh
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc       100 Jul 26 14:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 15:56:24] -rwxr-xr-x 1 boinc boinc      7986 Jul 26 14:23 run_atlas
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc       105 Jul 26 14:23 job.xml
[2025-07-26 15:56:24] -rw-r--r-- 2 boinc boinc 228444253 Jul 26 14:23 EVNT.45743347._001397.pool.root.1
[2025-07-26 15:56:24] drwxrwx--x 2 boinc boinc      4096 Jul 26 14:23 shared
[2025-07-26 15:56:24] -rw-r--r-- 2 boinc boinc    542894 Jul 26 14:23 input.tar.gz
[2025-07-26 15:56:24] -rw-r--r-- 2 boinc boinc     15095 Jul 26 14:23 start_atlas.sh
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc         0 Jul 26 14:23 boinc_setup_complete
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc      6526 Jul 26 14:23 init_data.xml
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc         0 Jul 26 14:23 boinc_lockfile
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc      2561 Jul 26 14:23 pandaJob.out
[2025-07-26 15:56:24] -rw------- 1 boinc boinc    980117 Jul 26 14:23 agis_schedconf.cvmfs.json
[2025-07-26 15:56:24] -rw------- 1 boinc boinc   1593052 Jul 26 14:23 agis_ddmendpoints.agis.ALL.json
[2025-07-26 15:56:24] drwx------ 4 boinc boinc      4096 Jul 26 14:23 pilot3
[2025-07-26 15:56:24] -rw------- 1 boinc boinc 212141414 Jul 26 15:55 HITS.45743349._024568.pool.root.1
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc       529 Jul 26 15:55 boinc_task_state.xml
[2025-07-26 15:56:24] -rw------- 1 boinc boinc      1031 Jul 26 15:55 memory_monitor_summary.json
[2025-07-26 15:56:24] -rw------- 1 boinc boinc    245227 Jul 26 15:55 log.45743349._024568.job.log.tgz.1
[2025-07-26 15:56:24] -rw------- 1 boinc boinc      7760 Jul 26 15:55 heartbeat.json
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc      8192 Jul 26 15:56 boinc_mmap_file
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc        27 Jul 26 15:56 wrapper_checkpoint.txt
[2025-07-26 15:56:24] -rw------- 1 boinc boinc       815 Jul 26 15:56 pilotlog.txt
[2025-07-26 15:56:24] -rw------- 1 boinc boinc        95 Jul 26 15:56 pilot_heartbeat.json
[2025-07-26 15:56:24] -rw------- 1 boinc boinc    532917 Jul 26 15:56 log.45743349._024568.job.log.1
[2025-07-26 15:56:24] -rw------- 1 boinc boinc       357 Jul 26 15:56 output.list
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc       620 Jul 26 15:56 runtime_log
[2025-07-26 15:56:24] -rw------- 1 boinc boinc    798720 Jul 26 15:56 result.tar.gz
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc      8749 Jul 26 15:56 runtime_log.err
[2025-07-26 15:56:24] -rw------- 1 boinc boinc       661 Jul 26 15:56 CmONDmrUbz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmM4PLDmBwsAan.diag
[2025-07-26 15:56:24] -rw-r--r-- 1 boinc boinc     22442 Jul 26 15:56 stderr.txt
[2025-07-26 15:56:24] HITS file was successfully produced:
[2025-07-26 15:56:24] -rw------- 1 boinc boinc 212141414 Jul 26 15:55 shared/HITS.pool.root.1
[2025-07-26 15:56:24]  *** Contents of shared directory: ***
[2025-07-26 15:56:24] total 431600
[2025-07-26 15:56:24] -rw-r--r-- 2 boinc boinc 228444253 Jul 26 14:23 ATLAS.root_0
[2025-07-26 15:56:24] -rw-r--r-- 2 boinc boinc    542894 Jul 26 14:23 input.tar.gz
[2025-07-26 15:56:24] -rw-r--r-- 2 boinc boinc     15095 Jul 26 14:23 start_atlas.sh
[2025-07-26 15:56:24] -rw------- 1 boinc boinc 212141414 Jul 26 15:55 HITS.pool.root.1
[2025-07-26 15:56:24] -rw------- 1 boinc boinc    798720 Jul 26 15:56 result.tar.gz
15:56:25 (63545): run_atlas exited; CPU time 15905.379957
15:56:25 (63545): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN