Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-26 04:12:42 (11024): Detected: vboxwrapper 26206
2025-07-26 04:12:42 (11024): Detected: BOINC client v7.22.2
2025-07-26 04:12:43 (11024): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-07-26 04:12:43 (11024): Successfully copied 'init_data.xml' to the shared directory.
2025-07-26 04:12:44 (11024): Create VM. (boinc_8ab721b3e51a3cdf, slot#14)
2025-07-26 04:12:44 (11024): Setting Memory Size for VM. (4800MB)
2025-07-26 04:12:45 (11024): Setting CPU Count for VM. (8)
2025-07-26 04:12:45 (11024): Setting Chipset Options for VM.
2025-07-26 04:12:45 (11024): Setting Graphics Controller Options for VM.
2025-07-26 04:12:45 (11024): Setting Boot Options for VM.
2025-07-26 04:12:46 (11024): Setting Network Configuration for NAT.
2025-07-26 04:12:46 (11024): Enabling VM Network Access.
2025-07-26 04:12:46 (11024): Disabling USB Support for VM.
2025-07-26 04:12:46 (11024): Disabling COM Port Support for VM.
2025-07-26 04:12:47 (11024): Disabling LPT Port Support for VM.
2025-07-26 04:12:47 (11024): Disabling Audio Support for VM.
2025-07-26 04:12:47 (11024): Disabling Clipboard Support for VM.
2025-07-26 04:12:48 (11024): Disabling Drag and Drop Support for VM.
2025-07-26 04:12:48 (11024): Adding storage controller(s) to VM.
2025-07-26 04:12:48 (11024): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-26 04:12:49 (11024): Adding VirtualBox Guest Additions to VM.
2025-07-26 04:12:49 (11024): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-26 04:12:50 (11024): forwarding host port 54614 to guest port 80
2025-07-26 04:12:50 (11024): Enabling remote desktop for VM.
2025-07-26 04:12:50 (11024): Required extension pack not installed, remote desktop not enabled.
2025-07-26 04:12:50 (11024): Enabling shared directory for VM.
2025-07-26 04:12:51 (11024): Starting VM using VBoxManage interface. (boinc_8ab721b3e51a3cdf, slot#14)
2025-07-26 04:12:54 (11024): Successfully started VM. (PID = '10252')
2025-07-26 04:12:54 (11024): Reporting VM Process ID to BOINC.
2025-07-26 04:12:54 (11024): Guest Log: BIOS: VirtualBox 6.1.34
2025-07-26 04:12:54 (11024): Guest Log: CPUID EDX: 0x178bfbff
2025-07-26 04:12:54 (11024): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-26 04:12:54 (11024): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-26 04:12:54 (11024): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-26 04:12:54 (11024): Detected: Web Application Enabled (http://localhost:54614)
2025-07-26 04:12:54 (11024): Preference change detected
2025-07-26 04:12:54 (11024): Setting CPU throttle for VM. (100%)
2025-07-26 04:12:55 (11024): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 04:12:56 (11024): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-26 04:12:56 (11024): Guest Log: BIOS: Booting from Hard Disk...
2025-07-26 04:12:59 (11024): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-26 04:12:59 (11024): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-26 04:12:59 (11024): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-26 04:13:05 (11024): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-26 04:13:05 (11024): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-26 04:13:11 (11024): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-26 04:13:11 (11024): Guest Log: 00:00:00.000120 main     Log opened 2025-07-26T04:13:09.257021000Z
2025-07-26 04:13:11 (11024): Guest Log: 00:00:00.000192 main     OS Product: Linux
2025-07-26 04:13:11 (11024): Guest Log: 00:00:00.000216 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-26 04:13:11 (11024): Guest Log: 00:00:00.000237 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-26 04:13:11 (11024): Guest Log: 00:00:00.000256 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-26 04:13:11 (11024): Guest Log: 00:00:00.000256 main     Process ID: 1367
2025-07-26 04:13:11 (11024): Guest Log: 00:00:00.000257 main     Package type: LINUX_64BITS_GENERIC
2025-07-26 04:13:11 (11024): Guest Log: 00:00:00.000712 main     5.2.32 r132073 started. Verbose level = 0
2025-07-26 04:13:11 (11024): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-26 04:13:11 (11024): Guest Log: [INFO] Mounting shared directory
2025-07-26 04:13:11 (11024): Guest Log: [INFO] Checking for init_data.xml
2025-07-26 04:13:17 (11024): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-26 04:13:17 (11024): Guest Log: [INFO] Detected branch: prod
2025-07-26 04:13:17 (11024): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-26 04:13:17 (11024): Guest Log: Copying input files
2025-07-26 04:13:18 (11024): Guest Log: Copied input files into RunAtlas.
2025-07-26 04:13:18 (11024): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-26 04:13:18 (11024): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-26 04:13:18 (11024): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-26 04:13:18 (11024): Guest Log: Further information can be found at the LHC@home message board.
2025-07-26 04:13:21 (11024): Guest Log: 00:00:10.015158 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 287 781 000ns (GuestNow=1 753 496 000 970 616 000 ns GuestLast=1 753 503 189 258 397 000 ns fSetTimeLastLoop=true )
2025-07-26 04:13:29 (11024): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-26 04:13:29 (11024): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-26 04:13:29 (11024): Guest Log: 2.6.3.0 1645 0 32192 148761 4 1 3117619 4096000 0 65024 0 0 n/a 1 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-26 04:13:34 (11024): Guest Log: copied the webapp to /var/www
2025-07-26 04:13:34 (11024): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-26 04:13:34 (11024): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-26 04:13:34 (11024): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-26 04:13:34 (11024): Guest Log:  *** Starting ATLAS job. (PandaID=6741891504 taskID=45697490) ***
2025-07-26 05:53:27 (11024): Status Report: Elapsed Time: '6000.000000'
2025-07-26 05:53:27 (11024): Status Report: CPU Time: '44900.531250'
2025-07-26 06:05:12 (11024): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 07:11:31 (11024): Preference change detected
2025-07-26 07:11:31 (11024): Setting CPU throttle for VM. (100%)
2025-07-26 07:11:31 (11024): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 07:11:31 (11024): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 07:11:36 (11024): Guest Log: 01:52:02.765571 timesync vgsvcTimeSyncWorker: Radical host time change: 3 984 993 000 000ns (HostNow=1 753 506 687 741 000 000 ns HostLast=1 753 502 702 748 000 000 ns)
2025-07-26 07:11:46 (11024): Guest Log: 01:52:12.766937 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 984 021 333 000ns (GuestNow=1 753 506 697 742 210 000 ns GuestLast=1 753 502 713 720 877 000 ns fSetTimeLastLoop=true )
2025-07-26 07:19:52 (11024): Preference change detected
2025-07-26 07:19:52 (11024): Setting CPU throttle for VM. (100%)
2025-07-26 07:19:52 (11024): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 07:31:30 (11024): Preference change detected
2025-07-26 07:31:30 (11024): Setting CPU throttle for VM. (100%)
2025-07-26 07:31:30 (11024): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 07:35:15 (11024): Preference change detected
2025-07-26 07:35:15 (11024): Setting CPU throttle for VM. (100%)
2025-07-26 07:35:15 (11024): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 07:45:44 (11024): Guest Log:  *** Job finished ***
2025-07-26 07:45:44 (11024): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:24,595 | INFO     | [data] copytool_in thread has finished
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:24,794 | INFO     | [job] control thread has finished
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:26,496 | INFO     | [data] queue_monitor thread has finished
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:28,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139964652656448)>', '<ExcThread(monitor, started 139963857368832)>']
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:29,521 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:29,521 | INFO     | [monitor] control thread has ended
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,658 | INFO     | all workflow threads have been joined
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,658 | INFO     | end of generic workflow (traces error code: 0)
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,659 | INFO     | traces error code: 0
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,659 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,800 [wrapper] ==== pilot stdout END ====
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,806 [wrapper] ==== wrapper stdout RESUME ====
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,812 [wrapper] pilotpid: 6005
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,816 [wrapper] Pilot exit status: 0
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,877 [wrapper] pandaids: 6741891504
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,911 [wrapper] cleanup supervisor_pilot  6515 6006
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,917 [wrapper] Test setup, not cleaning
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,922 [wrapper] apfmon messages muted
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,928 [wrapper] ==== wrapper stdout END ====
2025-07-26 07:45:44 (11024): Guest Log: 2025-07-26 05:45:33,934 [wrapper] ==== wrapper stderr END ====
2025-07-26 07:45:44 (11024): Guest Log:  *** Error codes and diagnostics ***
2025-07-26 07:45:44 (11024): Guest Log:     "exeErrorCode": 0,
2025-07-26 07:45:44 (11024): Guest Log:     "exeErrorDiag": "",
2025-07-26 07:45:44 (11024): Guest Log:     "pilotErrorCode": 0,
2025-07-26 07:45:44 (11024): Guest Log:     "pilotErrorDiag": "",
2025-07-26 07:45:44 (11024): Guest Log:  *** Listing of results directory ***
2025-07-26 07:45:44 (11024): Guest Log: total 298560
2025-07-26 07:45:44 (11024): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 23 09:49 pilot3.tar.gz
2025-07-26 07:45:44 (11024): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 23 10:00 queuedata.json
2025-07-26 07:45:44 (11024): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 23 10:02 runpilot2-wrapper.sh
2025-07-26 07:45:44 (11024): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 26 02:13 start_atlas.sh
2025-07-26 07:45:44 (11024): Guest Log: -rwxr-xr-x. 1 atlas atlas    542907 Jul 26 02:13 input.tar.gz
2025-07-26 07:45:44 (11024): Guest Log: -rwxr-xr-x. 1 atlas atlas      9456 Jul 26 02:13 init_data.xml
2025-07-26 07:45:44 (11024): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 26 02:13 EVNT.45697488._000229.pool.root.1 -> /data/./ATLAS.root_0
2025-07-26 07:45:44 (11024): Guest Log: -rw-r--r--. 1 atlas atlas      2590 Jul 26 02:13 pandaJob.out
2025-07-26 07:45:44 (11024): Guest Log: -rw-------. 1 atlas atlas    979977 Jul 26 02:14 agis_schedconf.cvmfs.json
2025-07-26 07:45:44 (11024): Guest Log: drwx------. 4 atlas atlas      4096 Jul 26 02:14 pilot3
2025-07-26 07:45:44 (11024): Guest Log: -rw-------. 1 atlas atlas 299702550 Jul 26 05:44 HITS.45697490._005198.pool.root.1
2025-07-26 07:45:44 (11024): Guest Log: -rw-------. 1 atlas atlas        97 Jul 26 05:44 pilot_heartbeat.json
2025-07-26 07:45:44 (11024): Guest Log: -rw-------. 1 atlas atlas      1026 Jul 26 05:44 memory_monitor_summary.json
2025-07-26 07:45:44 (11024): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 26 05:44 agis_ddmendpoints.agis.ALL.json
2025-07-26 07:45:44 (11024): Guest Log: -rw-------. 1 atlas atlas    350572 Jul 26 05:44 log.45697490._005198.job.log.tgz.1
2025-07-26 07:45:44 (11024): Guest Log: -rw-------. 1 atlas atlas      7789 Jul 26 05:45 heartbeat.json
2025-07-26 07:45:44 (11024): Guest Log: -rw-------. 1 atlas atlas      4540 Jul 26 05:45 pilotlog.txt
2025-07-26 07:45:44 (11024): Guest Log: -rw-------. 1 atlas atlas    756573 Jul 26 05:45 log.45697490._005198.job.log.1
2025-07-26 07:45:44 (11024): Guest Log: -rw-------. 1 atlas atlas       357 Jul 26 05:45 output.list
2025-07-26 07:45:44 (11024): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 26 05:45 runtime_log
2025-07-26 07:45:44 (11024): Guest Log: -rw-------. 1 atlas atlas   1126400 Jul 26 05:45 result.tar.gz
2025-07-26 07:45:44 (11024): Guest Log: -rw-r--r--. 1 atlas atlas      8609 Jul 26 05:45 runtime_log.err
2025-07-26 07:45:44 (11024): Guest Log: -rw-------. 1 atlas atlas       661 Jul 26 05:45 m9MODmsTly7n9Rq4apOajLDm4fhM0noT9bVof3QYDmw4vKDmZ6wFdn.diag
2025-07-26 07:45:44 (11024): Guest Log: Looking for outputfile HITS.45697490._005198.pool.root.1
2025-07-26 07:45:44 (11024): Guest Log: HITS file was successfully produced
2025-07-26 07:45:44 (11024): Guest Log: -rw-------. 1 atlas atlas 299702550 Jul 26 05:44 /home/atlas/RunAtlas/HITS.45697490._005198.pool.root.1
2025-07-26 07:45:45 (11024): Guest Log: Successfully finished the ATLAS job!
2025-07-26 07:45:45 (11024): Guest Log: Copying the results back to the shared directory!
2025-07-26 07:45:46 (11024): Guest Log:  *** Contents of shared directory: ***
2025-07-26 07:45:46 (11024): Guest Log: total 633912
2025-07-26 07:45:46 (11024): Guest Log: -rwxrwxrwx. 1 root root 347718230 Jul 26 02:12 ATLAS.root_0
2025-07-26 07:45:46 (11024): Guest Log: -rwxrwxrwx. 1 root root 299702550 Jul 26  2025 HITS.pool.root.1
2025-07-26 07:45:46 (11024): Guest Log: -rwxrwxrwx. 1 root root      9456 Jul 26 02:12 init_data.xml
2025-07-26 07:45:46 (11024): Guest Log: -rwxrwxrwx. 1 root root    542907 Jul 25 22:29 input.tar.gz
2025-07-26 07:45:46 (11024): Guest Log: -rwxrwxrwx. 1 root root   1126400 Jul 26  2025 result.tar.gz
2025-07-26 07:45:46 (11024): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 25 22:29 start_atlas.sh
2025-07-26 07:45:46 (11024): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-26 07:45:46 (11024): VM Completion File Detected.
2025-07-26 07:45:46 (11024): Powering off VM.
2025-07-26 07:45:47 (11024): Successfully stopped VM.
2025-07-26 07:45:47 (11024): Deregistering VM. (boinc_8ab721b3e51a3cdf, slot#14)
2025-07-26 07:45:47 (11024): Removing network bandwidth throttle group from VM.
2025-07-26 07:45:47 (11024): Removing VM from VirtualBox.
07:45:53 (11024): called boinc_finish(0)

</stderr_txt>
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