Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:37:12 (3254306): wrapper (7.7.26015): starting
18:37:12 (3254306): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 18:37:12] Arguments: --nthreads 8
[2025-07-25 18:37:12] Threads: 8
[2025-07-25 18:37:12] Checking for CVMFS
[2025-07-25 18:37:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 18:37:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 18:37:13] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 18:37:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 18:37:13] 2.13.0.0 3724680 16675 242576 148756 2 495 24739377 32935937 24438 16776704 0 80720608 99.516 120030514 20239 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 18:37:13] CVMFS is ok
[2025-07-25 18:37:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 18:37:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 18:37:13] Further information can be found at the LHC@home message board.
[2025-07-25 18:37:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 18:37:13] Checking for apptainer binary...
[2025-07-25 18:37:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 18:37:13] Running /usr/bin/apptainer --version
[2025-07-25 18:37:13] apptainer version 1.4.1-1.el9
[2025-07-25 18:37:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 18:37:14] c7-4-31.aglt2.org
[2025-07-25 18:37:14] apptainer works
[2025-07-25 18:37:14] Set ATHENA_PROC_NUMBER=8
[2025-07-25 18:37:14] Set ATHENA_CORE_NUMBER=8
[2025-07-25 18:37:14] Starting ATLAS job with PandaID=6745058475
[2025-07-25 18:37:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:40:04 (3254306): BOINC client no longer exists - exiting
20:40:04 (3254306): timer handler: client dead, exiting
20:45:11 (3946362): wrapper (7.7.26015): starting
20:45:11 (3946362): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 20:45:12] Arguments: --nthreads 8
[2025-07-25 20:45:12] Threads: 8
[2025-07-25 20:45:12] This job has been restarted, cleaning up previous attempt
[2025-07-25 20:45:12] Checking for CVMFS
[2025-07-25 20:45:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 20:45:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 20:45:12] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 20:45:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 20:45:12] 2.13.0.0 3724680 16803 247016 148758 3 576 26077402 32935937 21678 16776704 0 81265367 99.540 120234571 20199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.230.184:3128 1
[2025-07-25 20:45:12] CVMFS is ok
[2025-07-25 20:45:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 20:45:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 20:45:12] Further information can be found at the LHC@home message board.
[2025-07-25 20:45:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 20:45:12] Checking for apptainer binary...
[2025-07-25 20:45:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 20:45:12] Running /usr/bin/apptainer --version
[2025-07-25 20:45:12] apptainer version 1.4.1-1.el9
[2025-07-25 20:45:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 20:45:12] c7-4-31.aglt2.org
[2025-07-25 20:45:12] apptainer works
[2025-07-25 20:45:12] Set ATHENA_PROC_NUMBER=8
[2025-07-25 20:45:12] Set ATHENA_CORE_NUMBER=8
[2025-07-25 20:45:12] Starting ATLAS job with PandaID=6745058475
[2025-07-25 20:45:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 22:50:52]  *** The last 200 lines of the pilot log: ***
[2025-07-25 22:50:52] 2025-07-26 02:50:18,640 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 22:50:52] 2025-07-26 02:50:18,640 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 22:50:52] 2025-07-26 02:50:18,640 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 22:50:52] 2025-07-26 02:50:18,641 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 22:50:52] 2025-07-26 02:50:18,643 | INFO     | fitting pss+swap vs Time
[2025-07-25 22:50:52] 2025-07-26 02:50:18,643 | INFO     | sum of square deviations: 577002431.3658519
[2025-07-25 22:50:52] 2025-07-26 02:50:18,644 | INFO     | sum of deviations: 2084678814.1463442
[2025-07-25 22:50:52] 2025-07-26 02:50:18,644 | INFO     | mean x: 1753494477.1463416
[2025-07-25 22:50:52] 2025-07-26 02:50:18,644 | INFO     | mean y: 2153521.325203252
[2025-07-25 22:50:52] 2025-07-26 02:50:18,644 | INFO     | -- intersect: -6333127906.478391
[2025-07-25 22:50:52] 2025-07-26 02:50:18,644 | INFO     | intersect: -6333127906.478391
[2025-07-25 22:50:52] 2025-07-26 02:50:18,644 | INFO     | chi2: 2.143746895667179
[2025-07-25 22:50:52] 2025-07-26 02:50:18,645 | INFO     | sum of square deviations: 509462468.75423807
[2025-07-25 22:50:52] 2025-07-26 02:50:18,645 | INFO     | sum of deviations: 9008944517.627127
[2025-07-25 22:50:52] 2025-07-26 02:50:18,645 | INFO     | mean x: 1753494324.6525424
[2025-07-25 22:50:52] 2025-07-26 02:50:18,645 | INFO     | mean y: 2168647.5762711866
[2025-07-25 22:50:52] 2025-07-26 02:50:18,645 | INFO     | -- intersect: -31005283425.187218
[2025-07-25 22:50:52] 2025-07-26 02:50:18,646 | INFO     | intersect: -31005283425.187218
[2025-07-25 22:50:52] 2025-07-26 02:50:18,646 | INFO     | chi2: 1.4933489461113831
[2025-07-25 22:50:52] 2025-07-26 02:50:18,646 | INFO     | current chi2=1.4933489461113831 (change=30.339306886943774 %)
[2025-07-25 22:50:52] 2025-07-26 02:50:18,646 | INFO     | sum of square deviations: 447404026.4424771
[2025-07-25 22:50:52] 2025-07-26 02:50:18,647 | INFO     | sum of deviations: 8625348662.78761
[2025-07-25 22:50:52] 2025-07-26 02:50:18,647 | INFO     | mean x: 1753494172.1504424
[2025-07-25 22:50:52] 2025-07-26 02:50:18,647 | INFO     | mean y: 2167698.2477876106
[2025-07-25 22:50:52] 2025-07-26 02:50:18,647 | INFO     | -- intersect: -33802844592.82565
[2025-07-25 22:50:52] 2025-07-26 02:50:18,647 | INFO     | intersect: -33802844592.82565
[2025-07-25 22:50:52] 2025-07-26 02:50:18,647 | INFO     | chi2: 1.4954193129580045
[2025-07-25 22:50:52] 2025-07-26 02:50:18,647 | INFO     | current chi2=1.4954193129580045 (change=-0.1386391875798664 %)
[2025-07-25 22:50:52] 2025-07-26 02:50:18,647 | INFO     | right removable region: 112
[2025-07-25 22:50:52] 2025-07-26 02:50:18,647 | INFO     | sum of square deviations: 509451488.75423807
[2025-07-25 22:50:52] 2025-07-26 02:50:18,648 | INFO     | sum of deviations: -13772926117.635592
[2025-07-25 22:50:52] 2025-07-26 02:50:18,648 | INFO     | mean x: 1753494629.6525424
[2025-07-25 22:50:52] 2025-07-26 02:50:18,648 | INFO     | mean y: 2188657.618644068
[2025-07-25 22:50:52] 2025-07-26 02:50:18,648 | INFO     | -- intersect: 47407589397.40467
[2025-07-25 22:50:52] 2025-07-26 02:50:18,648 | INFO     | intersect: 47407589397.40467
[2025-07-25 22:50:52] 2025-07-26 02:50:18,648 | INFO     | chi2: 0.7246466689090189
[2025-07-25 22:50:52] 2025-07-26 02:50:18,649 | INFO     | current chi2=0.7246466689090189 (change=66.19719098492298 %)
[2025-07-25 22:50:52] 2025-07-26 02:50:18,649 | INFO     | sum of square deviations: 447389021.13274336
[2025-07-25 22:50:52] 2025-07-26 02:50:18,649 | INFO     | sum of deviations: -13418291303.601772
[2025-07-25 22:50:52] 2025-07-26 02:50:18,649 | INFO     | mean x: 1753494782.159292
[2025-07-25 22:50:52] 2025-07-26 02:50:18,649 | INFO     | mean y: 2187749.4778761063
[2025-07-25 22:50:52] 2025-07-26 02:50:18,649 | INFO     | -- intersect: 52593786279.96109
[2025-07-25 22:50:52] 2025-07-26 02:50:18,650 | INFO     | intersect: 52593786279.96109
[2025-07-25 22:50:52] 2025-07-26 02:50:18,650 | INFO     | chi2: 0.7195365361873689
[2025-07-25 22:50:52] 2025-07-26 02:50:18,650 | INFO     | current chi2=0.7195365361873689 (change=0.705189569054866 %)
[2025-07-25 22:50:52] 2025-07-26 02:50:18,650 | INFO     | left removable region: 20
[2025-07-25 22:50:52] 2025-07-26 02:50:18,650 | INFO     | sum of square deviations: 241430693.85869613
[2025-07-25 22:50:52] 2025-07-26 02:50:18,651 | INFO     | sum of deviations: -3651193451.217391
[2025-07-25 22:50:52] 2025-07-26 02:50:18,651 | INFO     | mean x: 1753494751.6847825
[2025-07-25 22:50:52] 2025-07-26 02:50:18,651 | INFO     | mean y: 2198025.1304347827
[2025-07-25 22:50:52] 2025-07-26 02:50:18,651 | INFO     | -- intersect: 26520568377.17313
[2025-07-25 22:50:52] 2025-07-26 02:50:18,651 | INFO     | intersect: 26520568377.17313
[2025-07-25 22:50:52] 2025-07-26 02:50:18,651 | INFO     | chi2: 0.03536662938585434
[2025-07-25 22:50:52] 2025-07-26 02:50:18,651 | INFO     | -- intersect: 26520568377.17313
[2025-07-25 22:50:52] 2025-07-26 02:50:18,651 | INFO     | current memory leak: -15.12 B/s (using 92 data points, chi2=0.04)
[2025-07-25 22:50:52] 2025-07-26 02:50:18,652 | INFO     | could have reported an average CPU frequency of 3081 MHz (8 samples)
[2025-07-25 22:50:52] 2025-07-26 02:50:18,652 | INFO     | ..............................
[2025-07-25 22:50:52] 2025-07-26 02:50:18,652 | INFO     | . Timing measurements:
[2025-07-25 22:50:52] 2025-07-26 02:50:18,652 | INFO     | . get job = 0 s
[2025-07-25 22:50:52] 2025-07-26 02:50:18,652 | INFO     | . initial setup = 1 s
[2025-07-25 22:50:52] 2025-07-26 02:50:18,652 | INFO     | . payload setup = 8 s
[2025-07-25 22:50:52] 2025-07-26 02:50:18,652 | INFO     | . stage-in = 0 s
[2025-07-25 22:50:52] 2025-07-26 02:50:18,652 | INFO     | . payload execution = 7448 s
[2025-07-25 22:50:52] 2025-07-26 02:50:18,652 | INFO     | . stage-out = 2 s
[2025-07-25 22:50:52] 2025-07-26 02:50:18,652 | INFO     | . log creation = 0 s
[2025-07-25 22:50:52] 2025-07-26 02:50:18,653 | INFO     | ..............................
[2025-07-25 22:50:52] 2025-07-26 02:50:18,860 | INFO     | 
[2025-07-25 22:50:52] 2025-07-26 02:50:18,860 | INFO     | job summary report
[2025-07-25 22:50:52] 2025-07-26 02:50:18,860 | INFO     | --------------------------------------------------
[2025-07-25 22:50:52] 2025-07-26 02:50:18,861 | INFO     | PanDA job id: 6745058475
[2025-07-25 22:50:52] 2025-07-26 02:50:18,861 | INFO     | task id: 45743349
[2025-07-25 22:50:52] 2025-07-26 02:50:18,861 | INFO     | errors: (none)
[2025-07-25 22:50:52] 2025-07-26 02:50:18,861 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 22:50:52] 2025-07-26 02:50:18,861 | INFO     | pilot state: finished 
[2025-07-25 22:50:52] 2025-07-26 02:50:18,861 | INFO     | transexitcode: 0
[2025-07-25 22:50:52] 2025-07-26 02:50:18,861 | INFO     | exeerrorcode: 0
[2025-07-25 22:50:52] 2025-07-26 02:50:18,861 | INFO     | exeerrordiag: 
[2025-07-25 22:50:52] 2025-07-26 02:50:18,861 | INFO     | exitcode: 0
[2025-07-25 22:50:52] 2025-07-26 02:50:18,861 | INFO     | exitmsg: OK
[2025-07-25 22:50:52] 2025-07-26 02:50:18,861 | INFO     | cpuconsumptiontime: 37279 s
[2025-07-25 22:50:52] 2025-07-26 02:50:18,862 | INFO     | nevents: 400
[2025-07-25 22:50:52] 2025-07-26 02:50:18,862 | INFO     | neventsw: 0
[2025-07-25 22:50:52] 2025-07-26 02:50:18,862 | INFO     | pid: 3978471
[2025-07-25 22:50:52] 2025-07-26 02:50:18,862 | INFO     | pgrp: 3978471
[2025-07-25 22:50:52] 2025-07-26 02:50:18,862 | INFO     | corecount: 8
[2025-07-25 22:50:52] 2025-07-26 02:50:18,862 | INFO     | event service: False
[2025-07-25 22:50:52] 2025-07-26 02:50:18,862 | INFO     | sizes: {0: 2397473, 6: 2397735, 11: 2397763, 7461: 2425311, 7462: 2425310, 7465: 2434548, 7478: 2434686}
[2025-07-25 22:50:52] 2025-07-26 02:50:18,862 | INFO     | --------------------------------------------------
[2025-07-25 22:50:52] 2025-07-26 02:50:18,862 | INFO     | 
[2025-07-25 22:50:52] 2025-07-26 02:50:18,862 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 22:50:52] 2025-07-26 02:50:18,898 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,899 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,899 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,899 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,899 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,899 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,899 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,899 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,899 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,899 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,899 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,899 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,899 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,900 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,900 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,900 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,900 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,900 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 22:50:52] 2025-07-26 02:50:18,900 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,900 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 22:50:52] 2025-07-26 02:50:18,900 | INFO     | job 6745058475 has completed (purged errors)
[2025-07-25 22:50:52] 2025-07-26 02:50:18,900 | INFO     | overall cleanup function is called
[2025-07-25 22:50:52] 2025-07-26 02:50:19,914 | INFO     | --- collectZombieJob: --- 10, [3978471]
[2025-07-25 22:50:52] 2025-07-26 02:50:19,916 | INFO     | zombie collector waiting for pid 3978471
[2025-07-25 22:50:52] 2025-07-26 02:50:19,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 22:50:52] 2025-07-26 02:50:19,916 | INFO     | collected zombie processes
[2025-07-25 22:50:52] 2025-07-26 02:50:19,917 | INFO     | will attempt to kill all subprocesses of pid=3978471
[2025-07-25 22:50:52] 2025-07-26 02:50:21,165 | INFO     | process IDs to be killed: [3978471] (in reverse order)
[2025-07-25 22:50:52] 2025-07-26 02:50:21,353 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 22:50:52] 2025-07-26 02:50:21,353 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 22:50:52] 2025-07-26 02:50:21,379 | INFO     | did not find any defunct processes belonging to 3978471
[2025-07-25 22:50:52] 2025-07-26 02:50:21,407 | INFO     | did not find any defunct processes belonging to 3978471
[2025-07-25 22:50:52] 2025-07-26 02:50:21,409 | INFO     | ready for new job
[2025-07-25 22:50:52] 2025-07-26 02:50:21,409 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 22:50:52] 2025-07-26 02:50:21,411 | INFO     | ***************************************
[2025-07-25 22:50:52] 2025-07-26 02:50:21,411 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 22:50:52] 2025-07-26 02:50:21,411 | INFO     | ***************************************
[2025-07-25 22:50:52] 2025-07-26 02:50:21,411 | INFO     | 
[2025-07-25 22:50:52] 2025-07-26 02:50:21,433 | INFO     | architecture information:
[2025-07-25 22:50:52] 2025-07-26 02:50:21,437 | INFO     | executing command: cat /etc/os-release
[2025-07-25 22:50:52] 2025-07-26 02:50:21,469 | INFO     | cat /etc/os-release:
[2025-07-25 22:50:52] NAME="CentOS Linux"
[2025-07-25 22:50:52] VERSION="7 (Core)"
[2025-07-25 22:50:52] ID="centos"
[2025-07-25 22:50:52] ID_LIKE="rhel fedora"
[2025-07-25 22:50:52] VERSION_ID="7"
[2025-07-25 22:50:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 22:50:52] ANSI_COLOR="0;31"
[2025-07-25 22:50:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 22:50:52] HOME_URL="https://www.centos.org/"
[2025-07-25 22:50:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 22:50:52] 
[2025-07-25 22:50:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 22:50:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 22:50:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 22:50:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 22:50:52] 
[2025-07-25 22:50:52] 2025-07-26 02:50:21,470 | INFO     | ***************************************
[2025-07-25 22:50:52] 2025-07-26 02:50:21,976 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 22:50:52] 2025-07-26 02:50:22,000 | INFO     | sufficient remaining disk space (75134664704 B)
[2025-07-25 22:50:52] 2025-07-26 02:50:22,000 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 22:50:52] 2025-07-26 02:50:22,000 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 22:50:52] 2025-07-26 02:50:22,000 | INFO     | update_server=False
[2025-07-25 22:50:52] 2025-07-26 02:50:22,000 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 22:50:52] 2025-07-26 02:50:22,006 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 22:50:52] 2025-07-26 02:50:22,006 | INFO     | aborting loop
[2025-07-25 22:50:52] 2025-07-26 02:50:22,006 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 22:50:52] 2025-07-26 02:50:22,006 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 22:50:52] 2025-07-26 02:50:22,143 | INFO     | all payload control threads have been joined
[2025-07-25 22:50:52] 2025-07-26 02:50:22,269 | INFO     | all job control threads have been joined
[2025-07-25 22:50:52] 2025-07-26 02:50:22,724 | INFO     | all data control threads have been joined
[2025-07-25 22:50:52] 2025-07-26 02:50:23,011 | INFO     | [job] retrieve thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:23,012 | INFO     | [job] job monitor thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:23,149 | INFO     | [payload] control thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:23,259 | INFO     | [data] copytool_in thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:23,275 | INFO     | [job] control thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:23,403 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:23,732 | INFO     | [data] control thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:23,746 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:23,764 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:23,881 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 22:50:52] 2025-07-26 02:50:24,013 | INFO     | [data] copytool_out thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:24,163 | INFO     | [job] validate thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:24,416 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:24,467 | INFO     | [payload] failed_post thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:24,488 | INFO     | [payload] validate_post thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:24,887 | INFO     | [job] queue monitor thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:26,016 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 22:50:52] 2025-07-26 02:50:26,934 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139708218931008)>', '<ExcThread(monitor, started 139707862198016)>']
[2025-07-25 22:50:52] 2025-07-26 02:50:31,961 | INFO     | all workflow threads have been joined
[2025-07-25 22:50:52] 2025-07-26 02:50:31,961 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 22:50:52] 2025-07-26 02:50:31,961 | INFO     | traces error code: 0
[2025-07-25 22:50:52] 2025-07-26 02:50:31,961 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 22:50:52] 2025-07-26 02:50:51,611 | INFO     | PID=3957231 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 22:50:52] 2025-07-26 02:50:51,611 | INFO     | .. there are 37 such processes running
[2025-07-25 22:50:52] 2025-07-26 02:50:51,612 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 22:50:52] 2025-07-26 02:50:51,612 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 22:50:52] 2025-07-26 02:50:51,612 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 22:50:52] 2025-07-26 02:50:51,612 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 22:50:52] 2025-07-26 02:50:51,613 | INFO     | [monitor] control thread has ended
[2025-07-25 22:50:52] 2025-07-26 02:50:51,913 [wrapper] ==== pilot stdout END ====
[2025-07-25 22:50:52] 2025-07-26 02:50:51,941 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 22:50:52] 2025-07-26 02:50:51,961 [wrapper] pilotpid: 3957231
[2025-07-25 22:50:52] 2025-07-26 02:50:51,980 [wrapper] Pilot exit status: 0
[2025-07-25 22:50:52] 2025-07-26 02:50:52,129 [wrapper] pandaids: 6745058475 6745058475
[2025-07-25 22:50:52] 2025-07-26 02:50:52,260 [wrapper] cleanup supervisor_pilot  412972 3957232
[2025-07-25 22:50:52] 2025-07-26 02:50:52,299 [wrapper] Test setup, not cleaning
[2025-07-25 22:50:52] 2025-07-26 02:50:52,308 [wrapper] apfmon messages muted
[2025-07-25 22:50:52] 2025-07-26 02:50:52,311 [wrapper] ==== wrapper stdout END ====
[2025-07-25 22:50:52] 2025-07-26 02:50:52,319 [wrapper] ==== wrapper stderr END ====
[2025-07-25 22:50:52]  *** Error codes and diagnostics ***
[2025-07-25 22:50:52]     "exeErrorCode": 0,
[2025-07-25 22:50:52]     "exeErrorDiag": "",
[2025-07-25 22:50:52]     "pilotErrorCode": 0,
[2025-07-25 22:50:52]     "pilotErrorDiag": "",
[2025-07-25 22:50:52]  *** Listing of results directory ***
[2025-07-25 22:50:52] total 500880
[2025-07-25 22:50:52] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-25 22:50:52] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 12:23 pilot3.tar.gz
[2025-07-25 22:50:52] -rwx------. 1 boincer umatlas     36292 Jul 25 12:42 runpilot2-wrapper.sh
[2025-07-25 22:50:52] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 12:42 queuedata.json
[2025-07-25 22:50:52] -rw-r--r--. 1 boincer umatlas       100 Jul 25 18:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 22:50:52] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 18:37 run_atlas
[2025-07-25 22:50:52] -rw-r--r--. 1 boincer umatlas       105 Jul 25 18:37 job.xml
[2025-07-25 22:50:52] -rw-r--r--. 3 boincer umatlas 148364926 Jul 25 18:37 EVNT.45743347._001355.pool.root.1
[2025-07-25 22:50:52] -rw-r--r--. 3 boincer umatlas 148364926 Jul 25 18:37 ATLAS.root_0
[2025-07-25 22:50:52] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 18:37 start_atlas.sh
[2025-07-25 22:50:52] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 18:37 shared
[2025-07-25 22:50:52] -rw-r--r--. 2 boincer umatlas    542888 Jul 25 18:37 input.tar.gz
[2025-07-25 22:50:52] -rw-r--r--. 1 boincer umatlas         0 Jul 25 18:37 boinc_lockfile
[2025-07-25 22:50:52] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 20:45 pandaJob.out
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas    979993 Jul 25 20:45 agis_schedconf.cvmfs.json
[2025-07-25 22:50:52] -rw-r--r--. 1 boincer umatlas      6935 Jul 25 22:45 init_data.xml
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas 210325096 Jul 25 22:49 HITS.45743349._023920.pool.root.1
[2025-07-25 22:50:52] -rw-r--r--. 1 boincer umatlas       531 Jul 25 22:49 boinc_task_state.xml
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas      1041 Jul 25 22:49 memory_monitor_summary.json
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas   1593052 Jul 25 22:50 agis_ddmendpoints.agis.ALL.json
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas    322725 Jul 25 22:50 log.45743349._023920.job.log.tgz.1
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas      7792 Jul 25 22:50 heartbeat.json
[2025-07-25 22:50:52] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 22:50 boinc_mmap_file
[2025-07-25 22:50:52] -rw-r--r--. 1 boincer umatlas        28 Jul 25 22:50 wrapper_checkpoint.txt
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas        96 Jul 25 22:50 pilot_heartbeat.json
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas       823 Jul 25 22:50 pilotlog.txt
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas    662477 Jul 25 22:50 log.45743349._023920.job.log.1
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas       357 Jul 25 22:50 output.list
[2025-07-25 22:50:52] -rw-r--r--. 1 boincer umatlas       620 Jul 25 22:50 runtime_log
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas   1003520 Jul 25 22:50 result.tar.gz
[2025-07-25 22:50:52] -rw-r--r--. 1 boincer umatlas      8740 Jul 25 22:50 runtime_log.err
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas       780 Jul 25 22:50 CtKODmjgaz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTyPLDm074Ynn.diag
[2025-07-25 22:50:52] -rw-r--r--. 1 boincer umatlas     23266 Jul 25 22:50 stderr.txt
[2025-07-25 22:50:52] HITS file was successfully produced:
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas 210325096 Jul 25 22:49 shared/HITS.pool.root.1
[2025-07-25 22:50:52]  *** Contents of shared directory: ***
[2025-07-25 22:50:52] total 351820
[2025-07-25 22:50:52] -rw-r--r--. 3 boincer umatlas 148364926 Jul 25 18:37 ATLAS.root_0
[2025-07-25 22:50:52] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 18:37 start_atlas.sh
[2025-07-25 22:50:52] -rw-r--r--. 2 boincer umatlas    542888 Jul 25 18:37 input.tar.gz
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas 210325096 Jul 25 22:49 HITS.pool.root.1
[2025-07-25 22:50:52] -rw-------. 1 boincer umatlas   1003520 Jul 25 22:50 result.tar.gz
22:50:54 (3946362): run_atlas exited; CPU time 37579.307103
22:50:54 (3946362): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN