Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:09:25 (3092885): wrapper (7.7.26015): starting
18:09:25 (3092885): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 18:09:25] Arguments: --nthreads 8
[2025-07-25 18:09:25] Threads: 8
[2025-07-25 18:09:25] Checking for CVMFS
[2025-07-25 18:09:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 18:09:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 18:09:25] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 18:09:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 18:09:25] 2.13.0.0 3724680 16647 230428 148755 2 109 24636463 32935936 23622 16776704 0 80541839 99.516 120023649 20239 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 18:09:25] CVMFS is ok
[2025-07-25 18:09:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 18:09:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 18:09:25] Further information can be found at the LHC@home message board.
[2025-07-25 18:09:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 18:09:25] Checking for apptainer binary...
[2025-07-25 18:09:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 18:09:25] Running /usr/bin/apptainer --version
[2025-07-25 18:09:25] apptainer version 1.4.1-1.el9
[2025-07-25 18:09:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 18:09:26] c7-4-31.aglt2.org
[2025-07-25 18:09:26] apptainer works
[2025-07-25 18:09:26] Set ATHENA_PROC_NUMBER=8
[2025-07-25 18:09:26] Set ATHENA_CORE_NUMBER=8
[2025-07-25 18:09:26] Starting ATLAS job with PandaID=6745058040
[2025-07-25 18:09:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:45:11 (3946361): wrapper (7.7.26015): starting
20:45:11 (3946361): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 20:45:12] Arguments: --nthreads 8
[2025-07-25 20:45:12] Threads: 8
[2025-07-25 20:45:12] This job has been restarted, cleaning up previous attempt
[2025-07-25 20:45:12] Checking for CVMFS
[2025-07-25 20:45:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 20:45:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 20:45:12] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 20:45:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 20:45:12] 2.13.0.0 3724680 16803 247016 148758 3 576 26077402 32935937 21678 16776704 0 81265367 99.540 120234571 20199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.230.184:3128 1
[2025-07-25 20:45:12] CVMFS is ok
[2025-07-25 20:45:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 20:45:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 20:45:12] Further information can be found at the LHC@home message board.
[2025-07-25 20:45:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 20:45:12] Checking for apptainer binary...
[2025-07-25 20:45:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 20:45:12] Running /usr/bin/apptainer --version
[2025-07-25 20:45:12] apptainer version 1.4.1-1.el9
[2025-07-25 20:45:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 20:45:12] c7-4-31.aglt2.org
[2025-07-25 20:45:12] apptainer works
[2025-07-25 20:45:12] Set ATHENA_PROC_NUMBER=8
[2025-07-25 20:45:12] Set ATHENA_CORE_NUMBER=8
[2025-07-25 20:45:12] Starting ATLAS job with PandaID=6745058040
[2025-07-25 20:45:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 23:21:33]  *** The last 200 lines of the pilot log: ***
[2025-07-25 23:21:33] 2025-07-26 03:21:00,597 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 23:21:33] 2025-07-26 03:21:00,597 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 23:21:33] 2025-07-26 03:21:00,597 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 23:21:33] 2025-07-26 03:21:00,600 | INFO     | fitting pss+swap vs Time
[2025-07-25 23:21:33] 2025-07-26 03:21:00,600 | INFO     | sum of square deviations: 1110511722.7189567
[2025-07-25 23:21:33] 2025-07-26 03:21:00,601 | INFO     | sum of deviations: 3228809813.1764603
[2025-07-25 23:21:33] 2025-07-26 03:21:00,601 | INFO     | mean x: 1753495392.0915034
[2025-07-25 23:21:33] 2025-07-26 03:21:00,601 | INFO     | mean y: 2283922.0588235296
[2025-07-25 23:21:33] 2025-07-26 03:21:00,601 | INFO     | -- intersect: -5095999160.8813
[2025-07-25 23:21:33] 2025-07-26 03:21:00,602 | INFO     | intersect: -5095999160.8813
[2025-07-25 23:21:33] 2025-07-26 03:21:00,602 | INFO     | chi2: 2.009902968270712
[2025-07-25 23:21:33] 2025-07-26 03:21:00,602 | INFO     | sum of square deviations: 1005155877.675672
[2025-07-25 23:21:33] 2025-07-26 03:21:00,603 | INFO     | sum of deviations: 11754317933.405405
[2025-07-25 23:21:33] 2025-07-26 03:21:00,603 | INFO     | mean x: 1753495239.5945945
[2025-07-25 23:21:33] 2025-07-26 03:21:00,603 | INFO     | mean y: 2295920.756756757
[2025-07-25 23:21:33] 2025-07-26 03:21:00,603 | INFO     | -- intersect: -20503121197.799088
[2025-07-25 23:21:33] 2025-07-26 03:21:00,603 | INFO     | intersect: -20503121197.799088
[2025-07-25 23:21:33] 2025-07-26 03:21:00,603 | INFO     | chi2: 1.3313551318805583
[2025-07-25 23:21:33] 2025-07-26 03:21:00,603 | INFO     | current chi2=1.3313551318805583 (change=33.76022858327162 %)
[2025-07-25 23:21:33] 2025-07-26 03:21:00,604 | INFO     | sum of square deviations: 906683882.6293671
[2025-07-25 23:21:33] 2025-07-26 03:21:00,604 | INFO     | sum of deviations: 11304461895.678318
[2025-07-25 23:21:33] 2025-07-26 03:21:00,604 | INFO     | mean x: 1753495087.097902
[2025-07-25 23:21:33] 2025-07-26 03:21:00,605 | INFO     | mean y: 2295228.5944055943
[2025-07-25 23:21:33] 2025-07-26 03:21:00,605 | INFO     | -- intersect: -21860140815.678265
[2025-07-25 23:21:33] 2025-07-26 03:21:00,605 | INFO     | intersect: -21860140815.678265
[2025-07-25 23:21:33] 2025-07-26 03:21:00,605 | INFO     | chi2: 1.3324767992359339
[2025-07-25 23:21:33] 2025-07-26 03:21:00,605 | INFO     | current chi2=1.3324767992359339 (change=-0.08425004933065333 %)
[2025-07-25 23:21:33] 2025-07-26 03:21:00,605 | INFO     | right removable region: 142
[2025-07-25 23:21:33] 2025-07-26 03:21:00,605 | INFO     | sum of square deviations: 1005147337.675672
[2025-07-25 23:21:33] 2025-07-26 03:21:00,606 | INFO     | sum of deviations: -16590899860.567568
[2025-07-25 23:21:33] 2025-07-26 03:21:00,606 | INFO     | mean x: 1753495544.5945945
[2025-07-25 23:21:33] 2025-07-26 03:21:00,606 | INFO     | mean y: 2312212.2905405406
[2025-07-25 23:21:33] 2025-07-26 03:21:00,606 | INFO     | -- intersect: 28945401345.465324
[2025-07-25 23:21:33] 2025-07-26 03:21:00,606 | INFO     | intersect: 28945401345.465324
[2025-07-25 23:21:33] 2025-07-26 03:21:00,607 | INFO     | chi2: 0.7400614658229737
[2025-07-25 23:21:33] 2025-07-26 03:21:00,607 | INFO     | current chi2=0.7400614658229737 (change=63.17924409755409 %)
[2025-07-25 23:21:33] 2025-07-26 03:21:00,607 | INFO     | sum of square deviations: 906666802.6293671
[2025-07-25 23:21:33] 2025-07-26 03:21:00,608 | INFO     | sum of deviations: -15975017939.272732
[2025-07-25 23:21:33] 2025-07-26 03:21:00,608 | INFO     | mean x: 1753495697.097902
[2025-07-25 23:21:33] 2025-07-26 03:21:00,608 | INFO     | mean y: 2311243.090909091
[2025-07-25 23:21:33] 2025-07-26 03:21:00,608 | INFO     | -- intersect: 30898032952.91897
[2025-07-25 23:21:33] 2025-07-26 03:21:00,608 | INFO     | intersect: 30898032952.91897
[2025-07-25 23:21:33] 2025-07-26 03:21:00,608 | INFO     | chi2: 0.7394664360102916
[2025-07-25 23:21:33] 2025-07-26 03:21:00,608 | INFO     | current chi2=0.7394664360102916 (change=0.08040275573873035 %)
[2025-07-25 23:21:33] 2025-07-26 03:21:00,608 | INFO     | left removable region: 20
[2025-07-25 23:21:33] 2025-07-26 03:21:00,609 | INFO     | sum of square deviations: 562998871.114752
[2025-07-25 23:21:33] 2025-07-26 03:21:00,609 | INFO     | sum of deviations: -3734389501.590166
[2025-07-25 23:21:33] 2025-07-26 03:21:00,609 | INFO     | mean x: 1753495666.6065574
[2025-07-25 23:21:33] 2025-07-26 03:21:00,609 | INFO     | mean y: 2318399.7377049183
[2025-07-25 23:21:33] 2025-07-26 03:21:00,609 | INFO     | -- intersect: 11633311185.733358
[2025-07-25 23:21:33] 2025-07-26 03:21:00,609 | INFO     | intersect: 11633311185.733358
[2025-07-25 23:21:33] 2025-07-26 03:21:00,610 | INFO     | chi2: 0.0309075003105197
[2025-07-25 23:21:33] 2025-07-26 03:21:00,614 | INFO     | -- intersect: 11633311185.733358
[2025-07-25 23:21:33] 2025-07-26 03:21:00,614 | INFO     | current memory leak: -6.63 B/s (using 122 data points, chi2=0.03)
[2025-07-25 23:21:33] 2025-07-26 03:21:00,614 | INFO     | could have reported an average CPU frequency of 3078 MHz (9 samples)
[2025-07-25 23:21:33] 2025-07-26 03:21:00,615 | INFO     | ..............................
[2025-07-25 23:21:33] 2025-07-26 03:21:00,615 | INFO     | . Timing measurements:
[2025-07-25 23:21:33] 2025-07-26 03:21:00,615 | INFO     | . get job = 0 s
[2025-07-25 23:21:33] 2025-07-26 03:21:00,615 | INFO     | . initial setup = 1 s
[2025-07-25 23:21:33] 2025-07-26 03:21:00,615 | INFO     | . payload setup = 8 s
[2025-07-25 23:21:33] 2025-07-26 03:21:00,615 | INFO     | . stage-in = 0 s
[2025-07-25 23:21:33] 2025-07-26 03:21:00,615 | INFO     | . payload execution = 9292 s
[2025-07-25 23:21:33] 2025-07-26 03:21:00,615 | INFO     | . stage-out = 2 s
[2025-07-25 23:21:33] 2025-07-26 03:21:00,615 | INFO     | . log creation = 0 s
[2025-07-25 23:21:33] 2025-07-26 03:21:00,615 | INFO     | ..............................
[2025-07-25 23:21:33] 2025-07-26 03:21:00,744 | INFO     | 
[2025-07-25 23:21:33] 2025-07-26 03:21:00,744 | INFO     | job summary report
[2025-07-25 23:21:33] 2025-07-26 03:21:00,744 | INFO     | --------------------------------------------------
[2025-07-25 23:21:33] 2025-07-26 03:21:00,744 | INFO     | PanDA job id: 6745058040
[2025-07-25 23:21:33] 2025-07-26 03:21:00,744 | INFO     | task id: 45743349
[2025-07-25 23:21:33] 2025-07-26 03:21:00,744 | INFO     | errors: (none)
[2025-07-25 23:21:33] 2025-07-26 03:21:00,744 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 23:21:33] 2025-07-26 03:21:00,744 | INFO     | pilot state: finished 
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | transexitcode: 0
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | exeerrorcode: 0
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | exeerrordiag: 
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | exitcode: 0
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | exitmsg: OK
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | cpuconsumptiontime: 38104 s
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | nevents: 400
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | neventsw: 0
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | pid: 3978472
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | pgrp: 3978472
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | corecount: 8
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | event service: False
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | sizes: {0: 2397473, 6: 2397735, 11: 2397763, 9305: 2426082, 9308: 2435080, 9311: 2435136, 9320: 2435522}
[2025-07-25 23:21:33] 2025-07-26 03:21:00,745 | INFO     | --------------------------------------------------
[2025-07-25 23:21:33] 2025-07-26 03:21:00,746 | INFO     | 
[2025-07-25 23:21:33] 2025-07-26 03:21:00,746 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-25 23:21:33] 2025-07-26 03:21:00,774 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,774 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,774 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,774 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 23:21:33] 2025-07-26 03:21:00,775 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,776 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 23:21:33] 2025-07-26 03:21:00,776 | INFO     | job 6745058040 has completed (purged errors)
[2025-07-25 23:21:33] 2025-07-26 03:21:00,776 | INFO     | overall cleanup function is called
[2025-07-25 23:21:33] 2025-07-26 03:21:01,792 | INFO     | --- collectZombieJob: --- 10, [3978472]
[2025-07-25 23:21:33] 2025-07-26 03:21:01,792 | INFO     | zombie collector waiting for pid 3978472
[2025-07-25 23:21:33] 2025-07-26 03:21:01,792 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 23:21:33] 2025-07-26 03:21:01,792 | INFO     | collected zombie processes
[2025-07-25 23:21:33] 2025-07-26 03:21:01,792 | INFO     | will attempt to kill all subprocesses of pid=3978472
[2025-07-25 23:21:33] 2025-07-26 03:21:02,522 | INFO     | process IDs to be killed: [3978472] (in reverse order)
[2025-07-25 23:21:33] 2025-07-26 03:21:02,700 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 23:21:33] 2025-07-26 03:21:02,702 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 23:21:33] 2025-07-26 03:21:02,725 | INFO     | did not find any defunct processes belonging to 3978472
[2025-07-25 23:21:33] 2025-07-26 03:21:02,748 | INFO     | did not find any defunct processes belonging to 3978472
[2025-07-25 23:21:33] 2025-07-26 03:21:02,748 | INFO     | ready for new job
[2025-07-25 23:21:33] 2025-07-26 03:21:02,749 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 23:21:33] 2025-07-26 03:21:02,750 | INFO     | ***************************************
[2025-07-25 23:21:33] 2025-07-26 03:21:02,750 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 23:21:33] 2025-07-26 03:21:02,750 | INFO     | ***************************************
[2025-07-25 23:21:33] 2025-07-26 03:21:02,751 | INFO     | 
[2025-07-25 23:21:33] 2025-07-26 03:21:02,757 | INFO     | architecture information:
[2025-07-25 23:21:33] 2025-07-26 03:21:02,757 | INFO     | executing command: cat /etc/os-release
[2025-07-25 23:21:33] 2025-07-26 03:21:02,776 | INFO     | cat /etc/os-release:
[2025-07-25 23:21:33] NAME="CentOS Linux"
[2025-07-25 23:21:33] VERSION="7 (Core)"
[2025-07-25 23:21:33] ID="centos"
[2025-07-25 23:21:33] ID_LIKE="rhel fedora"
[2025-07-25 23:21:33] VERSION_ID="7"
[2025-07-25 23:21:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 23:21:33] ANSI_COLOR="0;31"
[2025-07-25 23:21:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 23:21:33] HOME_URL="https://www.centos.org/"
[2025-07-25 23:21:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 23:21:33] 
[2025-07-25 23:21:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 23:21:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 23:21:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 23:21:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 23:21:33] 
[2025-07-25 23:21:33] 2025-07-26 03:21:02,777 | INFO     | ***************************************
[2025-07-25 23:21:33] 2025-07-26 03:21:03,280 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-25 23:21:33] 2025-07-26 03:21:03,326 | INFO     | sufficient remaining disk space (75927388160 B)
[2025-07-25 23:21:33] 2025-07-26 03:21:03,326 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 23:21:33] 2025-07-26 03:21:03,326 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 23:21:33] 2025-07-26 03:21:03,326 | INFO     | update_server=False
[2025-07-25 23:21:33] 2025-07-26 03:21:03,326 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 23:21:33] 2025-07-26 03:21:03,327 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 23:21:33] 2025-07-26 03:21:03,327 | INFO     | aborting loop
[2025-07-25 23:21:33] 2025-07-26 03:21:03,327 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 23:21:33] 2025-07-26 03:21:03,328 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 23:21:33] 2025-07-26 03:21:03,570 | INFO     | all payload control threads have been joined
[2025-07-25 23:21:33] 2025-07-26 03:21:04,333 | INFO     | [job] retrieve thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:04,345 | INFO     | [job] job monitor thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:04,363 | INFO     | all data control threads have been joined
[2025-07-25 23:21:33] 2025-07-26 03:21:04,577 | INFO     | [payload] control thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:04,828 | INFO     | all job control threads have been joined
[2025-07-25 23:21:33] 2025-07-26 03:21:05,002 | INFO     | [job] validate thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:05,234 | INFO     | [data] copytool_in thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:05,240 | INFO     | [payload] validate_post thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:05,258 | INFO     | [payload] failed_post thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:05,335 | INFO     | [data] copytool_out thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:05,369 | INFO     | [data] control thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:05,501 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:05,732 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:05,748 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:05,771 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 23:21:33] 2025-07-26 03:21:05,842 | INFO     | [job] control thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:06,778 | INFO     | [job] queue monitor thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:07,340 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:13,395 | INFO     | job.realtimelogging is not enabled
[2025-07-25 23:21:33] 2025-07-26 03:21:14,403 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 23:21:33] 2025-07-26 03:21:15,924 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140300444305216)>', '<ExcThread(monitor, started 140300089530112)>']
[2025-07-25 23:21:33] 2025-07-26 03:21:20,950 | INFO     | all workflow threads have been joined
[2025-07-25 23:21:33] 2025-07-26 03:21:20,950 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 23:21:33] 2025-07-26 03:21:20,950 | INFO     | traces error code: 0
[2025-07-25 23:21:33] 2025-07-26 03:21:20,951 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 23:21:33] 2025-07-26 03:21:32,934 | INFO     | PID=3957271 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 23:21:33] 2025-07-26 03:21:32,935 | INFO     | .. there are 37 such processes running
[2025-07-25 23:21:33] 2025-07-26 03:21:32,936 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 23:21:33] 2025-07-26 03:21:32,937 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 23:21:33] 2025-07-26 03:21:32,937 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 23:21:33] 2025-07-26 03:21:32,937 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 23:21:33] 2025-07-26 03:21:32,937 | INFO     | [monitor] control thread has ended
[2025-07-25 23:21:33] 2025-07-26 03:21:33,139 [wrapper] ==== pilot stdout END ====
[2025-07-25 23:21:33] 2025-07-26 03:21:33,142 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 23:21:33] 2025-07-26 03:21:33,146 [wrapper] pilotpid: 3957271
[2025-07-25 23:21:33] 2025-07-26 03:21:33,150 [wrapper] Pilot exit status: 0
[2025-07-25 23:21:33] 2025-07-26 03:21:33,163 [wrapper] pandaids: 6745058040 6745058040
[2025-07-25 23:21:33] 2025-07-26 03:21:33,281 [wrapper] cleanup supervisor_pilot  650410 3957272
[2025-07-25 23:21:33] 2025-07-26 03:21:33,285 [wrapper] Test setup, not cleaning
[2025-07-25 23:21:33] 2025-07-26 03:21:33,289 [wrapper] apfmon messages muted
[2025-07-25 23:21:33] 2025-07-26 03:21:33,292 [wrapper] ==== wrapper stdout END ====
[2025-07-25 23:21:33] 2025-07-26 03:21:33,295 [wrapper] ==== wrapper stderr END ====
[2025-07-25 23:21:33]  *** Error codes and diagnostics ***
[2025-07-25 23:21:33]     "exeErrorCode": 0,
[2025-07-25 23:21:33]     "exeErrorDiag": "",
[2025-07-25 23:21:33]     "pilotErrorCode": 0,
[2025-07-25 23:21:33]     "pilotErrorDiag": "",
[2025-07-25 23:21:33]  *** Listing of results directory ***
[2025-07-25 23:21:33] total 494404
[2025-07-25 23:21:33] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-25 23:21:33] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 11:55 pilot3.tar.gz
[2025-07-25 23:21:33] -rwx------. 1 boincer umatlas     36292 Jul 25 12:13 runpilot2-wrapper.sh
[2025-07-25 23:21:33] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 12:13 queuedata.json
[2025-07-25 23:21:33] -rw-r--r--. 1 boincer umatlas       100 Jul 25 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 23:21:33] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 18:09 run_atlas
[2025-07-25 23:21:33] -rw-r--r--. 1 boincer umatlas       105 Jul 25 18:09 job.xml
[2025-07-25 23:21:33] -rw-r--r--. 3 boincer umatlas 145926507 Jul 25 18:09 EVNT.45743347._001330.pool.root.1
[2025-07-25 23:21:33] -rw-r--r--. 3 boincer umatlas 145926507 Jul 25 18:09 ATLAS.root_0
[2025-07-25 23:21:33] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 18:09 start_atlas.sh
[2025-07-25 23:21:33] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 18:09 shared
[2025-07-25 23:21:33] -rw-r--r--. 2 boincer umatlas    542884 Jul 25 18:09 input.tar.gz
[2025-07-25 23:21:33] -rw-r--r--. 1 boincer umatlas         0 Jul 25 18:09 boinc_lockfile
[2025-07-25 23:21:33] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 20:45 pandaJob.out
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas    979993 Jul 25 20:45 agis_schedconf.cvmfs.json
[2025-07-25 23:21:33] -rw-r--r--. 1 boincer umatlas      6935 Jul 25 23:19 init_data.xml
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas 208239119 Jul 25 23:20 HITS.45743349._023546.pool.root.1
[2025-07-25 23:21:33] -rw-r--r--. 1 boincer umatlas       531 Jul 25 23:20 boinc_task_state.xml
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas      1043 Jul 25 23:20 memory_monitor_summary.json
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas   1593052 Jul 25 23:20 agis_ddmendpoints.agis.ALL.json
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas    346803 Jul 25 23:20 log.45743349._023546.job.log.tgz.1
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas      7791 Jul 25 23:21 heartbeat.json
[2025-07-25 23:21:33] -rw-r--r--. 1 boincer umatlas        28 Jul 25 23:21 wrapper_checkpoint.txt
[2025-07-25 23:21:33] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 23:21 boinc_mmap_file
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas        96 Jul 25 23:21 pilot_heartbeat.json
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas       823 Jul 25 23:21 pilotlog.txt
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas    800864 Jul 25 23:21 log.45743349._023546.job.log.1
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas       357 Jul 25 23:21 output.list
[2025-07-25 23:21:33] -rw-r--r--. 1 boincer umatlas       620 Jul 25 23:21 runtime_log
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas   1167360 Jul 25 23:21 result.tar.gz
[2025-07-25 23:21:33] -rw-r--r--. 1 boincer umatlas      8740 Jul 25 23:21 runtime_log.err
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas       780 Jul 25 23:21 RT9MDm9Daz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJvPLDmtGLYVo.diag
[2025-07-25 23:21:33] -rw-r--r--. 1 boincer umatlas     23138 Jul 25 23:21 stderr.txt
[2025-07-25 23:21:33] HITS file was successfully produced:
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas 208239119 Jul 25 23:20 shared/HITS.pool.root.1
[2025-07-25 23:21:33]  *** Contents of shared directory: ***
[2025-07-25 23:21:33] total 347564
[2025-07-25 23:21:33] -rw-r--r--. 3 boincer umatlas 145926507 Jul 25 18:09 ATLAS.root_0
[2025-07-25 23:21:33] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 18:09 start_atlas.sh
[2025-07-25 23:21:33] -rw-r--r--. 2 boincer umatlas    542884 Jul 25 18:09 input.tar.gz
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas 208239119 Jul 25 23:20 HITS.pool.root.1
[2025-07-25 23:21:33] -rw-------. 1 boincer umatlas   1167360 Jul 25 23:21 result.tar.gz
23:21:34 (3946361): run_atlas exited; CPU time 38471.167845
23:21:34 (3946361): called boinc_finish(0)

</stderr_txt>
]]>

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