Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:47:01 (2763790): wrapper (7.7.26015): starting
18:47:01 (2763790): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 18:47:01] Arguments: --nthreads 12
[2025-07-25 18:47:01] Threads: 12
[2025-07-25 18:47:01] Checking for CVMFS
[2025-07-25 18:47:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 18:47:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 18:47:01] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 18:47:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 18:47:02] 2.13.0.0 842134 16103 345200 148756 1 157 25750501 32935936 12380 16776704 0 37481046 99.667 69288434 33048 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 18:47:02] CVMFS is ok
[2025-07-25 18:47:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 18:47:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 18:47:02] Further information can be found at the LHC@home message board.
[2025-07-25 18:47:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 18:47:02] Checking for apptainer binary...
[2025-07-25 18:47:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 18:47:02] Running /usr/bin/apptainer --version
[2025-07-25 18:47:02] apptainer version 1.4.1-1.el9
[2025-07-25 18:47:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 18:47:02] c6-5-37-2.aglt2.org
[2025-07-25 18:47:02] apptainer works
[2025-07-25 18:47:02] Set ATHENA_PROC_NUMBER=12
[2025-07-25 18:47:02] Set ATHENA_CORE_NUMBER=12
[2025-07-25 18:47:02] Starting ATLAS job with PandaID=6744083306
[2025-07-25 18:47:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:11:23 (2828052): wrapper (7.7.26015): starting
19:11:23 (2828052): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 19:11:23] Arguments: --nthreads 12
[2025-07-25 19:11:23] Threads: 12
[2025-07-25 19:11:23] This job has been restarted, cleaning up previous attempt
[2025-07-25 19:11:23] Checking for CVMFS
[2025-07-25 19:11:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 19:11:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 19:11:23] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 19:11:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 19:11:24] 2.13.0.0 842134 16127 350612 148756 0 303 25755404 32935937 12892 16776704 0 37560859 99.667 69288489 33048 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 19:11:24] CVMFS is ok
[2025-07-25 19:11:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 19:11:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 19:11:24] Further information can be found at the LHC@home message board.
[2025-07-25 19:11:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 19:11:24] Checking for apptainer binary...
[2025-07-25 19:11:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 19:11:24] Running /usr/bin/apptainer --version
[2025-07-25 19:11:24] apptainer version 1.4.1-1.el9
[2025-07-25 19:11:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 19:11:24] c6-5-37-2.aglt2.org
[2025-07-25 19:11:24] apptainer works
[2025-07-25 19:11:24] Set ATHENA_PROC_NUMBER=12
[2025-07-25 19:11:24] Set ATHENA_CORE_NUMBER=12
[2025-07-25 19:11:24] Starting ATLAS job with PandaID=6744083306
[2025-07-25 19:11:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 21:15:04]  *** The last 200 lines of the pilot log: ***
[2025-07-25 21:15:04] 2025-07-26 01:14:30,967 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 21:15:04] 2025-07-26 01:14:30,967 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 21:15:04] 2025-07-26 01:14:30,967 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 21:15:04] 2025-07-26 01:14:30,967 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 21:15:04] 2025-07-26 01:14:30,970 | INFO     | fitting pss+swap vs Time
[2025-07-25 21:15:04] 2025-07-26 01:14:30,970 | INFO     | sum of square deviations: 549344314.0000015
[2025-07-25 21:15:04] 2025-07-26 01:14:30,971 | INFO     | sum of deviations: 14613822822.0
[2025-07-25 21:15:04] 2025-07-26 01:14:30,971 | INFO     | mean x: 1753488788.4545455
[2025-07-25 21:15:04] 2025-07-26 01:14:30,971 | INFO     | mean y: 2409551.1818181816
[2025-07-25 21:15:04] 2025-07-26 01:14:30,971 | INFO     | -- intersect: -46644427089.85074
[2025-07-25 21:15:04] 2025-07-26 01:14:30,971 | INFO     | intersect: -46644427089.85074
[2025-07-25 21:15:04] 2025-07-26 01:14:30,971 | INFO     | chi2: 2.0846949493448745
[2025-07-25 21:15:04] 2025-07-26 01:14:30,971 | INFO     | sum of square deviations: 484038932.92241406
[2025-07-25 21:15:04] 2025-07-26 01:14:30,972 | INFO     | sum of deviations: 22138204379.50863
[2025-07-25 21:15:04] 2025-07-26 01:14:30,972 | INFO     | mean x: 1753488635.974138
[2025-07-25 21:15:04] 2025-07-26 01:14:30,972 | INFO     | mean y: 2426554.8362068967
[2025-07-25 21:15:04] 2025-07-26 01:14:30,972 | INFO     | -- intersect: -80195853294.20132
[2025-07-25 21:15:04] 2025-07-26 01:14:30,972 | INFO     | intersect: -80195853294.20132
[2025-07-25 21:15:04] 2025-07-26 01:14:30,972 | INFO     | chi2: 1.388905713270333
[2025-07-25 21:15:04] 2025-07-26 01:14:30,972 | INFO     | current chi2=1.388905713270333 (change=33.376069544045116 %)
[2025-07-25 21:15:04] 2025-07-26 01:14:30,972 | INFO     | sum of square deviations: 424115215.6936936
[2025-07-25 21:15:04] 2025-07-26 01:14:30,973 | INFO     | sum of deviations: 20715208101.05405
[2025-07-25 21:15:04] 2025-07-26 01:14:30,973 | INFO     | mean x: 1753488483.4774776
[2025-07-25 21:15:04] 2025-07-26 01:14:30,973 | INFO     | mean y: 2422918.621621622
[2025-07-25 21:15:04] 2025-07-26 01:14:30,973 | INFO     | -- intersect: -85643829547.52809
[2025-07-25 21:15:04] 2025-07-26 01:14:30,973 | INFO     | intersect: -85643829547.52809
[2025-07-25 21:15:04] 2025-07-26 01:14:30,973 | INFO     | chi2: 1.389811110083935
[2025-07-25 21:15:04] 2025-07-26 01:14:30,973 | INFO     | current chi2=1.389811110083935 (change=-0.06518778092359152 %)
[2025-07-25 21:15:04] 2025-07-26 01:14:30,973 | INFO     | right removable region: 110
[2025-07-25 21:15:04] 2025-07-26 01:14:30,974 | INFO     | sum of square deviations: 484005382.92241406
[2025-07-25 21:15:04] 2025-07-26 01:14:30,974 | INFO     | sum of deviations: -2792638418.8448267
[2025-07-25 21:15:04] 2025-07-26 01:14:30,974 | INFO     | mean x: 1753488940.974138
[2025-07-25 21:15:04] 2025-07-26 01:14:30,974 | INFO     | mean y: 2449468.0517241377
[2025-07-25 21:15:04] 2025-07-26 01:14:30,974 | INFO     | -- intersect: 10119817489.904636
[2025-07-25 21:15:04] 2025-07-26 01:14:30,974 | INFO     | intersect: 10119817489.904636
[2025-07-25 21:15:04] 2025-07-26 01:14:30,975 | INFO     | chi2: 0.7631913596086831
[2025-07-25 21:15:04] 2025-07-26 01:14:30,975 | INFO     | current chi2=0.7631913596086831 (change=63.39074165989994 %)
[2025-07-25 21:15:04] 2025-07-26 01:14:30,975 | INFO     | sum of square deviations: 424075931.6936936
[2025-07-25 21:15:04] 2025-07-26 01:14:30,975 | INFO     | sum of deviations: -3409067543.513513
[2025-07-25 21:15:04] 2025-07-26 01:14:30,975 | INFO     | mean x: 1753489093.4774776
[2025-07-25 21:15:04] 2025-07-26 01:14:30,975 | INFO     | mean y: 2451057.5945945946
[2025-07-25 21:15:04] 2025-07-26 01:14:30,975 | INFO     | -- intersect: 14098423759.00385
[2025-07-25 21:15:04] 2025-07-26 01:14:30,975 | INFO     | intersect: 14098423759.00385
[2025-07-25 21:15:04] 2025-07-26 01:14:30,976 | INFO     | chi2: 0.7370385434687488
[2025-07-25 21:15:04] 2025-07-26 01:14:30,976 | INFO     | current chi2=0.7370385434687488 (change=3.4267704699046773 %)
[2025-07-25 21:15:04] 2025-07-26 01:14:30,976 | INFO     | left removable region: 20
[2025-07-25 21:15:04] 2025-07-26 01:14:30,976 | INFO     | sum of square deviations: 226045373.60000023
[2025-07-25 21:15:04] 2025-07-26 01:14:30,976 | INFO     | sum of deviations: 1197578336.8000004
[2025-07-25 21:15:04] 2025-07-26 01:14:30,976 | INFO     | mean x: 1753489063.0666666
[2025-07-25 21:15:04] 2025-07-26 01:14:30,976 | INFO     | mean y: 2477953.533333333
[2025-07-25 21:15:04] 2025-07-26 01:14:30,976 | INFO     | -- intersect: -9287429122.646559
[2025-07-25 21:15:04] 2025-07-26 01:14:30,977 | INFO     | intersect: -9287429122.646559
[2025-07-25 21:15:04] 2025-07-26 01:14:30,977 | INFO     | chi2: 0.013023749733135317
[2025-07-25 21:15:04] 2025-07-26 01:14:30,977 | INFO     | -- intersect: -9287429122.646559
[2025-07-25 21:15:04] 2025-07-26 01:14:30,977 | INFO     | current memory leak: 5.30 B/s (using 90 data points, chi2=0.01)
[2025-07-25 21:15:04] 2025-07-26 01:14:30,977 | INFO     | could have reported an average CPU frequency of 2782 MHz (8 samples)
[2025-07-25 21:15:04] 2025-07-26 01:14:30,977 | INFO     | ..............................
[2025-07-25 21:15:04] 2025-07-26 01:14:30,978 | INFO     | . Timing measurements:
[2025-07-25 21:15:04] 2025-07-26 01:14:30,978 | INFO     | . get job = 0 s
[2025-07-25 21:15:04] 2025-07-26 01:14:30,978 | INFO     | . initial setup = 1 s
[2025-07-25 21:15:04] 2025-07-26 01:14:30,978 | INFO     | . payload setup = 8 s
[2025-07-25 21:15:04] 2025-07-26 01:14:30,978 | INFO     | . stage-in = 0 s
[2025-07-25 21:15:04] 2025-07-26 01:14:30,978 | INFO     | . payload execution = 7339 s
[2025-07-25 21:15:04] 2025-07-26 01:14:30,978 | INFO     | . stage-out = 1 s
[2025-07-25 21:15:04] 2025-07-26 01:14:30,978 | INFO     | . log creation = 0 s
[2025-07-25 21:15:04] 2025-07-26 01:14:30,978 | INFO     | ..............................
[2025-07-25 21:15:04] 2025-07-26 01:14:31,150 | INFO     | 
[2025-07-25 21:15:04] 2025-07-26 01:14:31,151 | INFO     | job summary report
[2025-07-25 21:15:04] 2025-07-26 01:14:31,151 | INFO     | --------------------------------------------------
[2025-07-25 21:15:04] 2025-07-26 01:14:31,151 | INFO     | PanDA job id: 6744083306
[2025-07-25 21:15:04] 2025-07-26 01:14:31,151 | INFO     | task id: 45697472
[2025-07-25 21:15:04] 2025-07-26 01:14:31,151 | INFO     | errors: (none)
[2025-07-25 21:15:04] 2025-07-26 01:14:31,151 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 21:15:04] 2025-07-26 01:14:31,151 | INFO     | pilot state: finished 
[2025-07-25 21:15:04] 2025-07-26 01:14:31,151 | INFO     | transexitcode: 0
[2025-07-25 21:15:04] 2025-07-26 01:14:31,151 | INFO     | exeerrorcode: 0
[2025-07-25 21:15:04] 2025-07-26 01:14:31,151 | INFO     | exeerrordiag: 
[2025-07-25 21:15:04] 2025-07-26 01:14:31,151 | INFO     | exitcode: 0
[2025-07-25 21:15:04] 2025-07-26 01:14:31,152 | INFO     | exitmsg: OK
[2025-07-25 21:15:04] 2025-07-26 01:14:31,152 | INFO     | cpuconsumptiontime: 60899 s
[2025-07-25 21:15:04] 2025-07-26 01:14:31,152 | INFO     | nevents: 400
[2025-07-25 21:15:04] 2025-07-26 01:14:31,152 | INFO     | neventsw: 0
[2025-07-25 21:15:04] 2025-07-26 01:14:31,152 | INFO     | pid: 2838506
[2025-07-25 21:15:04] 2025-07-26 01:14:31,152 | INFO     | pgrp: 2838506
[2025-07-25 21:15:04] 2025-07-26 01:14:31,152 | INFO     | corecount: 12
[2025-07-25 21:15:04] 2025-07-26 01:14:31,152 | INFO     | event service: False
[2025-07-25 21:15:04] 2025-07-26 01:14:31,152 | INFO     | sizes: {0: 2397496, 6: 2397758, 11: 2397786, 7352: 2425121, 7353: 2434175, 7359: 2434313}
[2025-07-25 21:15:04] 2025-07-26 01:14:31,152 | INFO     | --------------------------------------------------
[2025-07-25 21:15:04] 2025-07-26 01:14:31,152 | INFO     | 
[2025-07-25 21:15:04] 2025-07-26 01:14:31,152 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 21:15:04] 2025-07-26 01:14:31,173 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,173 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,173 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,173 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,173 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,173 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,174 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,174 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,174 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,174 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,174 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,174 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,174 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,174 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,174 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,174 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,174 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 21:15:04] 2025-07-26 01:14:31,175 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,175 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 21:15:04] 2025-07-26 01:14:31,175 | INFO     | job 6744083306 has completed (purged errors)
[2025-07-25 21:15:04] 2025-07-26 01:14:31,175 | INFO     | overall cleanup function is called
[2025-07-25 21:15:04] 2025-07-26 01:14:32,183 | INFO     | --- collectZombieJob: --- 10, [2838506]
[2025-07-25 21:15:04] 2025-07-26 01:14:32,183 | INFO     | zombie collector waiting for pid 2838506
[2025-07-25 21:15:04] 2025-07-26 01:14:32,184 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 21:15:04] 2025-07-26 01:14:32,184 | INFO     | collected zombie processes
[2025-07-25 21:15:04] 2025-07-26 01:14:32,184 | INFO     | will attempt to kill all subprocesses of pid=2838506
[2025-07-25 21:15:04] 2025-07-26 01:14:32,440 | INFO     | process IDs to be killed: [2838506] (in reverse order)
[2025-07-25 21:15:04] 2025-07-26 01:14:32,538 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 21:15:04] 2025-07-26 01:14:32,539 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 21:15:04] 2025-07-26 01:14:32,553 | INFO     | did not find any defunct processes belonging to 2838506
[2025-07-25 21:15:04] 2025-07-26 01:14:32,567 | INFO     | did not find any defunct processes belonging to 2838506
[2025-07-25 21:15:04] 2025-07-26 01:14:32,567 | INFO     | ready for new job
[2025-07-25 21:15:04] 2025-07-26 01:14:32,568 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 21:15:04] 2025-07-26 01:14:32,570 | INFO     | ***************************************
[2025-07-25 21:15:04] 2025-07-26 01:14:32,571 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 21:15:04] 2025-07-26 01:14:32,571 | INFO     | ***************************************
[2025-07-25 21:15:04] 2025-07-26 01:14:32,571 | INFO     | 
[2025-07-25 21:15:04] 2025-07-26 01:14:32,587 | INFO     | architecture information:
[2025-07-25 21:15:04] 2025-07-26 01:14:32,588 | INFO     | executing command: cat /etc/os-release
[2025-07-25 21:15:04] 2025-07-26 01:14:32,606 | INFO     | cat /etc/os-release:
[2025-07-25 21:15:04] NAME="CentOS Linux"
[2025-07-25 21:15:04] VERSION="7 (Core)"
[2025-07-25 21:15:04] ID="centos"
[2025-07-25 21:15:04] ID_LIKE="rhel fedora"
[2025-07-25 21:15:04] VERSION_ID="7"
[2025-07-25 21:15:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 21:15:04] ANSI_COLOR="0;31"
[2025-07-25 21:15:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 21:15:04] HOME_URL="https://www.centos.org/"
[2025-07-25 21:15:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 21:15:04] 
[2025-07-25 21:15:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 21:15:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 21:15:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 21:15:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 21:15:04] 
[2025-07-25 21:15:04] 2025-07-26 01:14:32,606 | INFO     | ***************************************
[2025-07-25 21:15:04] 2025-07-26 01:14:33,109 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 21:15:04] 2025-07-26 01:14:33,128 | INFO     | sufficient remaining disk space (76095160320 B)
[2025-07-25 21:15:04] 2025-07-26 01:14:33,128 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 21:15:04] 2025-07-26 01:14:33,128 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 21:15:04] 2025-07-26 01:14:33,128 | INFO     | update_server=False
[2025-07-25 21:15:04] 2025-07-26 01:14:33,129 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 21:15:04] 2025-07-26 01:14:33,129 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 21:15:04] 2025-07-26 01:14:33,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 21:15:04] 2025-07-26 01:14:33,129 | INFO     | aborting loop
[2025-07-25 21:15:04] 2025-07-26 01:14:33,719 | INFO     | all data control threads have been joined
[2025-07-25 21:15:04] 2025-07-26 01:14:33,954 | INFO     | all job control threads have been joined
[2025-07-25 21:15:04] 2025-07-26 01:14:34,133 | INFO     | [job] retrieve thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:34,135 | INFO     | [job] job monitor thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:34,211 | INFO     | all payload control threads have been joined
[2025-07-25 21:15:04] 2025-07-26 01:14:34,220 | INFO     | [job] validate thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:34,319 | INFO     | [payload] validate_post thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:34,610 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:34,685 | INFO     | [data] copytool_in thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:34,724 | INFO     | [data] control thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:34,960 | INFO     | [job] control thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:35,121 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:35,123 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:35,135 | INFO     | [data] copytool_out thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:35,216 | INFO     | [payload] control thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:35,485 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:35,525 | INFO     | [payload] failed_post thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:35,675 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 21:15:04] 2025-07-26 01:14:36,081 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 21:15:04] 2025-07-26 01:14:37,087 | INFO     | [job] queue monitor thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:39,682 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 21:15:04] 2025-07-26 01:14:41,448 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140403086440256)>', '<ExcThread(monitor, started 140402464118528)>']
[2025-07-25 21:15:04] 2025-07-26 01:14:46,472 | INFO     | all workflow threads have been joined
[2025-07-25 21:15:04] 2025-07-26 01:14:46,473 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 21:15:04] 2025-07-26 01:14:46,473 | INFO     | traces error code: 0
[2025-07-25 21:15:04] 2025-07-26 01:14:46,474 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 21:15:04] 2025-07-26 01:15:04,138 | INFO     | PID=2831624 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 21:15:04] 2025-07-26 01:15:04,139 | INFO     | .. there are 15 such processes running
[2025-07-25 21:15:04] 2025-07-26 01:15:04,139 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 21:15:04] 2025-07-26 01:15:04,140 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 21:15:04] 2025-07-26 01:15:04,140 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 21:15:04] 2025-07-26 01:15:04,140 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 21:15:04] 2025-07-26 01:15:04,140 | INFO     | [monitor] control thread has ended
[2025-07-25 21:15:04] 2025-07-26 01:15:04,315 [wrapper] ==== pilot stdout END ====
[2025-07-25 21:15:04] 2025-07-26 01:15:04,319 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 21:15:04] 2025-07-26 01:15:04,323 [wrapper] pilotpid: 2831624
[2025-07-25 21:15:04] 2025-07-26 01:15:04,326 [wrapper] Pilot exit status: 0
[2025-07-25 21:15:04] 2025-07-26 01:15:04,339 [wrapper] pandaids: 6744083306 6744083306
[2025-07-25 21:15:04] 2025-07-26 01:15:04,408 [wrapper] cleanup supervisor_pilot 3084012 2831625
[2025-07-25 21:15:04] 2025-07-26 01:15:04,413 [wrapper] Test setup, not cleaning
[2025-07-25 21:15:04] 2025-07-26 01:15:04,418 [wrapper] apfmon messages muted
[2025-07-25 21:15:04] 2025-07-26 01:15:04,423 [wrapper] ==== wrapper stdout END ====
[2025-07-25 21:15:04] 2025-07-26 01:15:04,425 [wrapper] ==== wrapper stderr END ====
[2025-07-25 21:15:04]  *** Error codes and diagnostics ***
[2025-07-25 21:15:04]     "exeErrorCode": 0,
[2025-07-25 21:15:04]     "exeErrorDiag": "",
[2025-07-25 21:15:04]     "pilotErrorCode": 0,
[2025-07-25 21:15:04]     "pilotErrorDiag": "",
[2025-07-25 21:15:04]  *** Listing of results directory ***
[2025-07-25 21:15:04] total 930664
[2025-07-25 21:15:04] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-25 21:15:04] -rw-r--r--. 1 boincer umatlas    530466 Jul 23 19:42 pilot3.tar.gz
[2025-07-25 21:15:04] -rw-r--r--. 1 boincer umatlas      5112 Jul 23 20:14 queuedata.json
[2025-07-25 21:15:04] -rwx------. 1 boincer umatlas     36292 Jul 23 20:14 runpilot2-wrapper.sh
[2025-07-25 21:15:04] -rw-r--r--. 1 boincer umatlas       100 Jul 25 18:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 21:15:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 18:47 run_atlas
[2025-07-25 21:15:04] -rw-r--r--. 1 boincer umatlas       105 Jul 25 18:47 job.xml
[2025-07-25 21:15:04] -rw-r--r--. 3 boincer umatlas 332119061 Jul 25 18:47 EVNT.45697470._000159.pool.root.1
[2025-07-25 21:15:04] -rw-r--r--. 3 boincer umatlas 332119061 Jul 25 18:47 ATLAS.root_0
[2025-07-25 21:15:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 18:47 start_atlas.sh
[2025-07-25 21:15:04] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 18:47 shared
[2025-07-25 21:15:04] -rw-r--r--. 2 boincer umatlas    542909 Jul 25 18:47 input.tar.gz
[2025-07-25 21:15:04] -rw-r--r--. 1 boincer umatlas         0 Jul 25 18:47 boinc_lockfile
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas   1593052 Jul 25 18:47 agis_ddmendpoints.agis.ALL.json
[2025-07-25 21:15:04] -rw-r--r--. 1 boincer umatlas      2613 Jul 25 19:11 pandaJob.out
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas    980001 Jul 25 19:11 agis_schedconf.cvmfs.json
[2025-07-25 21:15:04] -rw-r--r--. 1 boincer umatlas      6843 Jul 25 21:10 init_data.xml
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas 282839535 Jul 25 21:13 HITS.45697472._006373.pool.root.1
[2025-07-25 21:15:04] -rw-r--r--. 1 boincer umatlas       530 Jul 25 21:13 boinc_task_state.xml
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas      1038 Jul 25 21:14 memory_monitor_summary.json
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas    393320 Jul 25 21:14 log.45697472._006373.job.log.tgz.1
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas      7815 Jul 25 21:14 heartbeat.json
[2025-07-25 21:15:04] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 21:14 boinc_mmap_file
[2025-07-25 21:15:04] -rw-r--r--. 1 boincer umatlas        27 Jul 25 21:14 wrapper_checkpoint.txt
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas       823 Jul 25 21:15 pilotlog.txt
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas        96 Jul 25 21:15 pilot_heartbeat.json
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas    629038 Jul 25 21:15 log.45697472._006373.job.log.1
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas       357 Jul 25 21:15 output.list
[2025-07-25 21:15:04] -rw-r--r--. 1 boincer umatlas       620 Jul 25 21:15 runtime_log
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas   1044480 Jul 25 21:15 result.tar.gz
[2025-07-25 21:15:04] -rw-r--r--. 1 boincer umatlas      8752 Jul 25 21:15 runtime_log.err
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas       778 Jul 25 21:15 iIALDmcmyy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmTYwKDm6vyYIn.diag
[2025-07-25 21:15:04] -rw-r--r--. 1 boincer umatlas     23140 Jul 25 21:15 stderr.txt
[2025-07-25 21:15:04] HITS file was successfully produced:
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas 282839535 Jul 25 21:13 shared/HITS.pool.root.1
[2025-07-25 21:15:04]  *** Contents of shared directory: ***
[2025-07-25 21:15:04] total 602120
[2025-07-25 21:15:04] -rw-r--r--. 3 boincer umatlas 332119061 Jul 25 18:47 ATLAS.root_0
[2025-07-25 21:15:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 18:47 start_atlas.sh
[2025-07-25 21:15:04] -rw-r--r--. 2 boincer umatlas    542909 Jul 25 18:47 input.tar.gz
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas 282839535 Jul 25 21:13 HITS.pool.root.1
[2025-07-25 21:15:04] -rw-------. 1 boincer umatlas   1044480 Jul 25 21:15 result.tar.gz
21:15:05 (2828052): run_atlas exited; CPU time 61021.908179
21:15:05 (2828052): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN