Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:54:23 (2601709): wrapper (7.7.26015): starting
16:54:23 (2601709): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 16:54:23] Arguments: --nthreads 8
[2025-07-25 16:54:23] Threads: 8
[2025-07-25 16:54:23] Checking for CVMFS
[2025-07-25 16:54:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 16:54:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 16:54:24] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 16:54:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 16:54:24] 2.13.0.0 3724680 16572 237236 148752 1 277 24262259 32935937 22794 16776704 0 80004588 99.514 119908293 20241 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 16:54:24] CVMFS is ok
[2025-07-25 16:54:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 16:54:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 16:54:24] Further information can be found at the LHC@home message board.
[2025-07-25 16:54:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 16:54:24] Checking for apptainer binary...
[2025-07-25 16:54:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 16:54:24] Running /usr/bin/apptainer --version
[2025-07-25 16:54:24] apptainer version 1.4.1-1.el9
[2025-07-25 16:54:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 16:54:25] c7-4-31.aglt2.org
[2025-07-25 16:54:25] apptainer works
[2025-07-25 16:54:25] Set ATHENA_PROC_NUMBER=8
[2025-07-25 16:54:25] Set ATHENA_CORE_NUMBER=8
[2025-07-25 16:54:25] Starting ATLAS job with PandaID=6745057529
[2025-07-25 16:54:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 18:36:30]  *** The last 200 lines of the pilot log: ***
[2025-07-25 18:36:30] 2025-07-25 22:35:33,374 | INFO     | PID=2606011 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-25 18:36:30] 2025-07-25 22:35:33,374 | INFO     | .. there are 37 such processes running
[2025-07-25 18:36:30] 2025-07-25 22:35:33,888 | WARNING  | process 2615420 can no longer be monitored (due to stat problems) - aborting
[2025-07-25 18:36:30] 2025-07-25 22:35:33,889 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745057529/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 18:36:30] 2025-07-25 22:35:34,350 | INFO     | number of running child processes to parent process 2615420: 1
[2025-07-25 18:36:30] 2025-07-25 22:35:34,350 | INFO     | maximum number of monitored processes: 6
[2025-07-25 18:36:30] 2025-07-25 22:35:35,496 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 18:36:30] 2025-07-25 22:35:35,578 | INFO     | job 6745057529 has state=finished
[2025-07-25 18:36:30] 2025-07-25 22:35:35,578 | INFO     | preparing for final server update for job 6745057529 in state='finished'
[2025-07-25 18:36:30] 2025-07-25 22:35:35,578 | INFO     | this job has now completed (state=finished)
[2025-07-25 18:36:30] 2025-07-25 22:35:35,578 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 18:36:30] 2025-07-25 22:35:35,578 | INFO     | log transfer has been attempted: DONE
[2025-07-25 18:36:30] 2025-07-25 22:35:35,579 | INFO     | job 6745057529 has finished - writing final server update
[2025-07-25 18:36:30] 2025-07-25 22:35:35,579 | INFO     | total number of processed events: 400 (read)
[2025-07-25 18:36:30] 2025-07-25 22:35:35,592 | INFO     | executing command: lscpu
[2025-07-25 18:36:30] 2025-07-25 22:35:35,779 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 18:36:30] 2025-07-25 22:35:36,855 | INFO     | monitor loop #405: job 0:6745057529 is in state 'finished'
[2025-07-25 18:36:30] 2025-07-25 22:35:36,855 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 18:36:30] 2025-07-25 22:35:39,365 | INFO     | monitor loop #406: job 0:6745057529 is in state 'finished'
[2025-07-25 18:36:30] 2025-07-25 22:35:39,365 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 18:36:30] 2025-07-25 22:35:41,870 | INFO     | monitor loop #407: job 0:6745057529 is in state 'finished'
[2025-07-25 18:36:30] 2025-07-25 22:35:41,870 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 18:36:30] 2025-07-25 22:35:44,375 | INFO     | monitor loop #408: job 0:6745057529 is in state 'finished'
[2025-07-25 18:36:30] 2025-07-25 22:35:44,375 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 18:36:30] 2025-07-25 22:35:44,444 | INFO     | 6060s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-25 18:36:30] 2025-07-25 22:35:46,883 | INFO     | monitor loop #409: job 0:6745057529 is in state 'finished'
[2025-07-25 18:36:30] 2025-07-25 22:35:46,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 18:36:30] 2025-07-25 22:35:49,388 | INFO     | monitor loop #410: job 0:6745057529 is in state 'finished'
[2025-07-25 18:36:30] 2025-07-25 22:35:49,388 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 18:36:30] 2025-07-25 22:35:51,892 | INFO     | monitor loop #411: job 0:6745057529 is in state 'finished'
[2025-07-25 18:36:30] 2025-07-25 22:35:51,892 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 18:36:30] 2025-07-25 22:35:54,397 | INFO     | monitor loop #412: job 0:6745057529 is in state 'finished'
[2025-07-25 18:36:30] 2025-07-25 22:35:54,397 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 18:36:30] 2025-07-25 22:35:55,715 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-25 18:36:30] 2025-07-25 22:35:55,747 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3135.0569166666664
[2025-07-25 18:36:30] 2025-07-25 22:35:55,866 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745057529/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 18:36:30] 2025-07-25 22:35:55,867 | INFO     | extracted standard info from prmon json
[2025-07-25 18:36:30] 2025-07-25 22:35:55,867 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 18:36:30] 2025-07-25 22:35:55,867 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 18:36:30] 2025-07-25 22:35:55,867 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 18:36:30] 2025-07-25 22:35:55,868 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 18:36:30] 2025-07-25 22:35:55,869 | INFO     | fitting pss+swap vs Time
[2025-07-25 18:36:30] 2025-07-25 22:35:55,869 | INFO     | sum of square deviations: 241433120.9891305
[2025-07-25 18:36:30] 2025-07-25 22:35:55,870 | INFO     | sum of deviations: -9396762238.445654
[2025-07-25 18:36:30] 2025-07-25 22:35:55,870 | INFO     | mean x: 1753480028.5108695
[2025-07-25 18:36:30] 2025-07-25 22:35:55,870 | INFO     | mean y: 2221469.945652174
[2025-07-25 18:36:30] 2025-07-25 22:35:55,870 | INFO     | -- intersect: 68249009028.6475
[2025-07-25 18:36:30] 2025-07-25 22:35:55,870 | INFO     | intersect: 68249009028.6475
[2025-07-25 18:36:30] 2025-07-25 22:35:55,870 | INFO     | chi2: 0.2162111755570269
[2025-07-25 18:36:30] 2025-07-25 22:35:55,870 | INFO     | -- intersect: 68249009028.6475
[2025-07-25 18:36:30] 2025-07-25 22:35:55,870 | INFO     | current memory leak: -38.92 B/s (using 92 data points, chi2=0.22)
[2025-07-25 18:36:30] 2025-07-25 22:35:55,894 | INFO     | could have reported an average CPU frequency of 3084 MHz (7 samples)
[2025-07-25 18:36:30] 2025-07-25 22:35:55,894 | INFO     | ..............................
[2025-07-25 18:36:30] 2025-07-25 22:35:55,894 | INFO     | . Timing measurements:
[2025-07-25 18:36:30] 2025-07-25 22:35:55,894 | INFO     | . get job = 0 s
[2025-07-25 18:36:30] 2025-07-25 22:35:55,894 | INFO     | . initial setup = 4 s
[2025-07-25 18:36:30] 2025-07-25 22:35:55,894 | INFO     | . payload setup = 16 s
[2025-07-25 18:36:30] 2025-07-25 22:35:55,894 | INFO     | . stage-in = 0 s
[2025-07-25 18:36:30] 2025-07-25 22:35:55,895 | INFO     | . payload execution = 5989 s
[2025-07-25 18:36:30] 2025-07-25 22:35:55,895 | INFO     | . stage-out = 0 s
[2025-07-25 18:36:30] 2025-07-25 22:35:55,895 | INFO     | . log creation = 0 s
[2025-07-25 18:36:30] 2025-07-25 22:35:55,895 | INFO     | ..............................
[2025-07-25 18:36:30] 2025-07-25 22:35:56,242 | INFO     | 
[2025-07-25 18:36:30] 2025-07-25 22:35:56,242 | INFO     | job summary report
[2025-07-25 18:36:30] 2025-07-25 22:35:56,242 | INFO     | --------------------------------------------------
[2025-07-25 18:36:30] 2025-07-25 22:35:56,242 | INFO     | PanDA job id: 6745057529
[2025-07-25 18:36:30] 2025-07-25 22:35:56,242 | INFO     | task id: 45743349
[2025-07-25 18:36:30] 2025-07-25 22:35:56,242 | INFO     | errors: (none)
[2025-07-25 18:36:30] 2025-07-25 22:35:56,242 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 18:36:30] 2025-07-25 22:35:56,242 | INFO     | pilot state: finished 
[2025-07-25 18:36:30] 2025-07-25 22:35:56,242 | INFO     | transexitcode: 0
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | exeerrorcode: 0
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | exeerrordiag: 
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | exitcode: 0
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | exitmsg: OK
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | cpuconsumptiontime: 33634 s
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | nevents: 400
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | neventsw: 0
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | pid: 2615420
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | pgrp: 2615420
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | corecount: 8
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | event service: False
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | sizes: {0: 2397473, 1: 2397473, 11: 2397501, 13: 2397791, 22: 2397847, 6010: 2424866, 6011: 2433864, 6015: 2433920, 6035: 2434114}
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | --------------------------------------------------
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | 
[2025-07-25 18:36:30] 2025-07-25 22:35:56,243 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 18:36:30] 2025-07-25 22:35:56,333 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,333 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,333 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,333 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,334 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,334 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,334 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,334 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,334 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,334 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,334 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,334 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,334 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,334 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,334 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,335 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,335 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,335 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 18:36:30] 2025-07-25 22:35:56,335 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,335 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 18:36:30] 2025-07-25 22:35:56,335 | INFO     | job 6745057529 has completed (purged errors)
[2025-07-25 18:36:30] 2025-07-25 22:35:56,335 | INFO     | overall cleanup function is called
[2025-07-25 18:36:30] 2025-07-25 22:35:57,183 | INFO     | PID=2606011 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 18:36:30] 2025-07-25 22:35:57,184 | INFO     | .. there are 37 such processes running
[2025-07-25 18:36:30] 2025-07-25 22:35:57,368 | INFO     | --- collectZombieJob: --- 10, [2615420]
[2025-07-25 18:36:30] 2025-07-25 22:35:57,368 | INFO     | zombie collector waiting for pid 2615420
[2025-07-25 18:36:30] 2025-07-25 22:35:57,368 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 18:36:30] 2025-07-25 22:35:57,370 | INFO     | collected zombie processes
[2025-07-25 18:36:30] 2025-07-25 22:35:57,370 | INFO     | will attempt to kill all subprocesses of pid=2615420
[2025-07-25 18:36:30] 2025-07-25 22:35:58,206 | INFO     | process IDs to be killed: [2615420] (in reverse order)
[2025-07-25 18:36:30] 2025-07-25 22:35:58,727 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 18:36:30] 2025-07-25 22:35:58,728 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 18:36:30] 2025-07-25 22:35:58,779 | INFO     | did not find any defunct processes belonging to 2615420
[2025-07-25 18:36:30] 2025-07-25 22:35:58,799 | INFO     | did not find any defunct processes belonging to 2615420
[2025-07-25 18:36:30] 2025-07-25 22:35:58,799 | INFO     | ready for new job
[2025-07-25 18:36:30] 2025-07-25 22:35:58,799 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 18:36:30] 2025-07-25 22:35:58,801 | INFO     | ***************************************
[2025-07-25 18:36:30] 2025-07-25 22:35:58,801 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 18:36:30] 2025-07-25 22:35:58,801 | INFO     | ***************************************
[2025-07-25 18:36:30] 2025-07-25 22:35:58,801 | INFO     | 
[2025-07-25 18:36:30] 2025-07-25 22:35:58,821 | INFO     | architecture information:
[2025-07-25 18:36:30] 2025-07-25 22:35:58,821 | INFO     | executing command: cat /etc/os-release
[2025-07-25 18:36:30] 2025-07-25 22:35:58,844 | INFO     | cat /etc/os-release:
[2025-07-25 18:36:30] NAME="CentOS Linux"
[2025-07-25 18:36:30] VERSION="7 (Core)"
[2025-07-25 18:36:30] ID="centos"
[2025-07-25 18:36:30] ID_LIKE="rhel fedora"
[2025-07-25 18:36:30] VERSION_ID="7"
[2025-07-25 18:36:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 18:36:30] ANSI_COLOR="0;31"
[2025-07-25 18:36:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 18:36:30] HOME_URL="https://www.centos.org/"
[2025-07-25 18:36:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 18:36:30] 
[2025-07-25 18:36:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 18:36:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 18:36:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 18:36:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 18:36:30] 
[2025-07-25 18:36:30] 2025-07-25 22:35:58,844 | INFO     | ***************************************
[2025-07-25 18:36:30] 2025-07-25 22:35:59,349 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 18:36:30] 2025-07-25 22:35:59,395 | INFO     | sufficient remaining disk space (76058460160 B)
[2025-07-25 18:36:30] 2025-07-25 22:35:59,395 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 18:36:30] 2025-07-25 22:35:59,395 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 18:36:30] 2025-07-25 22:35:59,395 | INFO     | update_server=False
[2025-07-25 18:36:30] 2025-07-25 22:35:59,395 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 18:36:30] 2025-07-25 22:35:59,438 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-25 18:36:30] 2025-07-25 22:35:59,438 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-25 18:36:30] 2025-07-25 22:35:59,438 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 18:36:30] 2025-07-25 22:35:59,438 | INFO     | will abort loop
[2025-07-25 18:36:30] 2025-07-25 22:35:59,520 | INFO     | all payload control threads have been joined
[2025-07-25 18:36:30] 2025-07-25 22:35:59,709 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 18:36:30] 2025-07-25 22:36:00,314 | INFO     | all job control threads have been joined
[2025-07-25 18:36:30] 2025-07-25 22:36:00,401 | INFO     | [job] retrieve thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:00,426 | INFO     | all data control threads have been joined
[2025-07-25 18:36:30] 2025-07-25 22:36:00,444 | INFO     | [job] job monitor thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:00,530 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 18:36:30] 2025-07-25 22:36:00,534 | INFO     | [payload] control thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:00,760 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:00,962 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:01,002 | INFO     | [payload] failed_post thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:01,168 | INFO     | [data] copytool_in thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:01,258 | INFO     | [payload] validate_post thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:01,262 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 18:36:30] 2025-07-25 22:36:01,320 | INFO     | [job] control thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:01,383 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:01,431 | INFO     | [data] control thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:01,567 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:01,637 | INFO     | [job] validate thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:02,268 | INFO     | [job] queue monitor thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:02,542 | INFO     | [data] copytool_out thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:03,722 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 18:36:30] 2025-07-25 22:36:05,558 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139907204044608)>', '<ExcThread(monitor, started 139906705762048)>']
[2025-07-25 18:36:30] 2025-07-25 22:36:10,584 | INFO     | all workflow threads have been joined
[2025-07-25 18:36:30] 2025-07-25 22:36:10,584 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 18:36:30] 2025-07-25 22:36:10,584 | INFO     | traces error code: 0
[2025-07-25 18:36:30] 2025-07-25 22:36:10,584 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 18:36:30] 2025-07-25 22:36:29,954 | INFO     | PID=2606011 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 18:36:30] 2025-07-25 22:36:29,956 | INFO     | .. there are 37 such processes running
[2025-07-25 18:36:30] 2025-07-25 22:36:29,957 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 18:36:30] 2025-07-25 22:36:29,957 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 18:36:30] 2025-07-25 22:36:29,957 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 18:36:30] 2025-07-25 22:36:29,957 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 18:36:30] 2025-07-25 22:36:29,957 | INFO     | [monitor] control thread has ended
[2025-07-25 18:36:30] 2025-07-25 22:36:30,088 [wrapper] ==== pilot stdout END ====
[2025-07-25 18:36:30] 2025-07-25 22:36:30,106 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 18:36:30] 2025-07-25 22:36:30,131 [wrapper] pilotpid: 2606011
[2025-07-25 18:36:30] 2025-07-25 22:36:30,175 [wrapper] Pilot exit status: 0
[2025-07-25 18:36:30] 2025-07-25 22:36:30,228 [wrapper] pandaids: 6745057529
[2025-07-25 18:36:30] 2025-07-25 22:36:30,393 [wrapper] cleanup supervisor_pilot 3218862 2606012
[2025-07-25 18:36:30] 2025-07-25 22:36:30,395 [wrapper] Test setup, not cleaning
[2025-07-25 18:36:30] 2025-07-25 22:36:30,398 [wrapper] apfmon messages muted
[2025-07-25 18:36:30] 2025-07-25 22:36:30,401 [wrapper] ==== wrapper stdout END ====
[2025-07-25 18:36:30] 2025-07-25 22:36:30,403 [wrapper] ==== wrapper stderr END ====
[2025-07-25 18:36:30]  *** Error codes and diagnostics ***
[2025-07-25 18:36:30]     "exeErrorCode": 0,
[2025-07-25 18:36:30]     "exeErrorDiag": "",
[2025-07-25 18:36:30]     "pilotErrorCode": 0,
[2025-07-25 18:36:30]     "pilotErrorDiag": "",
[2025-07-25 18:36:30]  *** Listing of results directory ***
[2025-07-25 18:36:30] total 346332
[2025-07-25 18:36:30] -rwx------. 1 boincer umatlas     36292 Jul 25 11:27 runpilot2-wrapper.sh
[2025-07-25 18:36:30] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 11:27 queuedata.json
[2025-07-25 18:36:30] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 11:27 pilot3.tar.gz
[2025-07-25 18:36:30] -rw-r--r--. 1 boincer umatlas       100 Jul 25 16:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 18:36:30] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 16:54 run_atlas
[2025-07-25 18:36:30] -rw-r--r--. 1 boincer umatlas       105 Jul 25 16:54 job.xml
[2025-07-25 18:36:30] -rw-r--r--. 2 boincer umatlas 144704422 Jul 25 16:54 EVNT.45743347._001299.pool.root.1
[2025-07-25 18:36:30] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 16:54 start_atlas.sh
[2025-07-25 18:36:30] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 16:54 shared
[2025-07-25 18:36:30] -rw-r--r--. 2 boincer umatlas    542880 Jul 25 16:54 input.tar.gz
[2025-07-25 18:36:30] -rw-r--r--. 1 boincer umatlas         0 Jul 25 16:54 boinc_lockfile
[2025-07-25 18:36:30] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 16:54 pandaJob.out
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas    979993 Jul 25 16:54 agis_schedconf.cvmfs.json
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas   1593052 Jul 25 16:54 agis_ddmendpoints.agis.ALL.json
[2025-07-25 18:36:30] drwx------. 4 boincer umatlas      4096 Jul 25 16:54 pilot3
[2025-07-25 18:36:30] -rw-r--r--. 1 boincer umatlas      6934 Jul 25 18:28 init_data.xml
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas 204319077 Jul 25 18:34 HITS.45743349._023073.pool.root.1
[2025-07-25 18:36:30] -rw-r--r--. 1 boincer umatlas       529 Jul 25 18:35 boinc_task_state.xml
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas      1033 Jul 25 18:35 memory_monitor_summary.json
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas    315938 Jul 25 18:35 log.45743349._023073.job.log.tgz.1
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas      7771 Jul 25 18:35 heartbeat.json
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas       823 Jul 25 18:36 pilotlog.txt
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas        95 Jul 25 18:36 pilot_heartbeat.json
[2025-07-25 18:36:30] -rw-r--r--. 1 boincer umatlas        27 Jul 25 18:36 wrapper_checkpoint.txt
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas    555236 Jul 25 18:36 log.45743349._023073.job.log.1
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas       357 Jul 25 18:36 output.list
[2025-07-25 18:36:30] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 18:36 boinc_mmap_file
[2025-07-25 18:36:30] -rw-r--r--. 1 boincer umatlas       620 Jul 25 18:36 runtime_log
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas    890880 Jul 25 18:36 result.tar.gz
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas       652 Jul 25 18:36 TyxMDmHVZz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmG9yKDmzKVuwm.diag
[2025-07-25 18:36:30] -rw-r--r--. 1 boincer umatlas      8655 Jul 25 18:36 runtime_log.err
[2025-07-25 18:36:30] -rw-r--r--. 1 boincer umatlas     22471 Jul 25 18:36 stderr.txt
[2025-07-25 18:36:30] HITS file was successfully produced:
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas 204319077 Jul 25 18:34 shared/HITS.pool.root.1
[2025-07-25 18:36:30]  *** Contents of shared directory: ***
[2025-07-25 18:36:30] total 342272
[2025-07-25 18:36:30] -rw-r--r--. 2 boincer umatlas 144704422 Jul 25 16:54 ATLAS.root_0
[2025-07-25 18:36:30] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 16:54 start_atlas.sh
[2025-07-25 18:36:30] -rw-r--r--. 2 boincer umatlas    542880 Jul 25 16:54 input.tar.gz
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas 204319077 Jul 25 18:34 HITS.pool.root.1
[2025-07-25 18:36:30] -rw-------. 1 boincer umatlas    890880 Jul 25 18:36 result.tar.gz
18:36:32 (2601709): run_atlas exited; CPU time 33858.823641
18:36:32 (2601709): called boinc_finish(0)

</stderr_txt>
]]>

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