Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:10:16 (3857171): wrapper (7.7.26015): starting
19:10:16 (3857171): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 19:10:16] Arguments: --nthreads 4
[2025-07-27 19:10:16] Threads: 4
[2025-07-27 19:10:16] Checking for CVMFS
[2025-07-27 19:10:16] No cvmfs_config command found, will try listing directly
[2025-07-27 19:10:16] CVMFS is ok
[2025-07-27 19:10:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:10:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:10:16] Further information can be found at the LHC@home message board.
[2025-07-27 19:10:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:10:16] Checking for apptainer binary...
[2025-07-27 19:10:16] which: no apptainer in ((null))
[2025-07-27 19:10:16] apptainer is not installed, using version from CVMFS
[2025-07-27 19:10:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:10:16] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-07-27 19:10:16] apptainer works
[2025-07-27 19:10:16] Set ATHENA_PROC_NUMBER=4
[2025-07-27 19:10:16] Set ATHENA_CORE_NUMBER=4
[2025-07-27 19:10:16] Starting ATLAS job with PandaID=6745015445
[2025-07-27 19:10:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:23:49]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:23:49] 2025-07-27 17:23:15,017 | WARNING  | wrong length of table data, x=[1753636569.0, 1753636630.0, 1753636691.0], y=[2302835.0, 2317553.0, 2307832.0] (must be same and length>=4)
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | could have reported an average CPU frequency of 2705 MHz (4 samples)
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | ..............................
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . Timing measurements:
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . get job = 0 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . initial setup = 1 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . payload setup = 9 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . stage-in = 0 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . payload execution = 607 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . stage-out = 0 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . log creation = 0 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | ..............................
[2025-07-27 19:23:49] 2025-07-27 17:23:15,019 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 19:23:49] 2025-07-27 17:23:15,019 | INFO     | executing command: tail -n 20 /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6745015445/pilotlog.txt
[2025-07-27 19:23:49] 2025-07-27 17:23:15,038 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-27 19:23:49] - Log from pilotlog.txt -
[2025-07-27 19:23:49] 2025-07-27 17:23:15,015 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6745015445/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | INFO     | extracted standard info from prmon json
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:23:49] 2025-07-27 17:23:15,017 | WARNING  | wrong length of table data, x=[1753636569.0, 1753636630.0, 1753636691.0], y=[2302835.0, 2317553.0, 2307832.0] (must be same and length>=4)
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | could have reported an average CPU frequency of 2705 MHz (4 samples)
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | ..............................
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . Timing measurements:
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . get job = 0 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . initial setup = 1 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . payload setup = 9 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . stage-in = 0 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . payload execution = 607 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . stage-out = 0 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . log creation = 0 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | ..............................
[2025-07-27 19:23:49] 2025-07-27 17:23:15,019 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 19:23:49] 2025-07-27 17:23:15,019 | INFO     | executing command: tail -n 20 /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6745015445/pilotlog.txt
[2025-07-27 19:23:49] 2025-07-27 17:23:15,038 | WARNING  | 
[2025-07-27 19:23:49] [begin log extracts]
[2025-07-27 19:23:49] - Log from pilotlog.txt -
[2025-07-27 19:23:49] 2025-07-27 17:23:15,015 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6745015445/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | INFO     | extracted standard info from prmon json
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:23:49] 2025-07-27 17:23:15,016 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:23:49] 2025-07-27 17:23:15,017 | WARNING  | wrong length of table data, x=[1753636569.0, 1753636630.0, 1753636691.0], y=[2302835.0, 2317553.0, 2307832.0] (must be same and length>=4)
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | could have reported an average CPU frequency of 2705 MHz (4 samples)
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | ..............................
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . Timing measurements:
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . get job = 0 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . initial setup = 1 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . payload setup = 9 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . stage-in = 0 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . payload execution = 607 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . stage-out = 0 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | . log creation = 0 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,018 | INFO     | ..............................
[2025-07-27 19:23:49] 2025-07-27 17:23:15,019 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 19:23:49] 2025-07-27 17:23:15,019 | INFO     | executing command: tail -n 20 /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6745015445/pilotlog.txt
[2025-07-27 19:23:49] [end log extracts]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,038 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-27 19:23:49] 2025-07-27 17:23:15,039 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-27 19:23:49] 2025-07-27 17:23:15,139 | INFO     | 
[2025-07-27 19:23:49] 2025-07-27 17:23:15,139 | INFO     | job summary report
[2025-07-27 19:23:49] 2025-07-27 17:23:15,139 | INFO     | --------------------------------------------------
[2025-07-27 19:23:49] 2025-07-27 17:23:15,139 | INFO     | PanDA job id: 6745015445
[2025-07-27 19:23:49] 2025-07-27 17:23:15,139 | INFO     | task id: 45743349
[2025-07-27 19:23:49] 2025-07-27 17:23:15,139 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-27 19:20:59,412 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-27 19:23:49] 2025-07-27 17:23:15,140 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:23:49] 2025-07-27 17:23:15,140 | INFO     | pilot state: failed 
[2025-07-27 19:23:49] 2025-07-27 17:23:15,140 | INFO     | transexitcode: 65
[2025-07-27 19:23:49] 2025-07-27 17:23:15,140 | INFO     | exeerrorcode: 65
[2025-07-27 19:23:49] 2025-07-27 17:23:15,140 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "ISF_Kernel_FullG4MT_QS                                16     3   FATAL  S
[2025-07-27 19:23:49] 2025-07-27 17:23:15,140 | INFO     | exitcode: 65
[2025-07-27 19:23:49] 2025-07-27 17:23:15,140 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "ISF_Kernel_FullG4MT_QS                                16     3   FATAL  Standa
[2025-07-27 19:23:49] 2025-07-27 17:23:15,140 | INFO     | cpuconsumptiontime: 1459 s
[2025-07-27 19:23:49] 2025-07-27 17:23:15,140 | INFO     | nevents: 0
[2025-07-27 19:23:49] 2025-07-27 17:23:15,140 | INFO     | neventsw: 0
[2025-07-27 19:23:49] 2025-07-27 17:23:15,140 | INFO     | pid: 3883244
[2025-07-27 19:23:49] 2025-07-27 17:23:15,141 | INFO     | pgrp: 3883244
[2025-07-27 19:23:49] 2025-07-27 17:23:15,141 | INFO     | corecount: 4
[2025-07-27 19:23:49] 2025-07-27 17:23:15,141 | INFO     | event service: False
[2025-07-27 19:23:49] 2025-07-27 17:23:15,141 | INFO     | sizes: {0: 2397311, 1: 2397510, 7: 2397772, 11: 2397800, 620: 2427918, 622: 2432224, 624: 2432408, 747: 2432602}
[2025-07-27 19:23:49] 2025-07-27 17:23:15,141 | INFO     | --------------------------------------------------
[2025-07-27 19:23:49] 2025-07-27 17:23:15,141 | INFO     | 
[2025-07-27 19:23:49] 2025-07-27 17:23:15,141 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-07-27 19:23:49] 2025-07-27 17:23:15,175 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,176 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,176 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,176 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,176 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,176 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,176 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,176 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,176 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,176 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,176 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,177 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,177 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,177 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,177 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,177 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,177 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,177 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:23:49] 2025-07-27 17:23:15,177 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,177 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:23:49] 2025-07-27 17:23:15,177 | INFO     | job 6745015445 has completed (purged errors)
[2025-07-27 19:23:49] 2025-07-27 17:23:15,178 | INFO     | overall cleanup function is called
[2025-07-27 19:23:49] 2025-07-27 17:23:16,186 | INFO     | --- collectZombieJob: --- 10, [3883244]
[2025-07-27 19:23:49] 2025-07-27 17:23:16,187 | INFO     | zombie collector waiting for pid 3883244
[2025-07-27 19:23:49] 2025-07-27 17:23:16,187 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:23:49] 2025-07-27 17:23:16,187 | INFO     | collected zombie processes
[2025-07-27 19:23:49] 2025-07-27 17:23:16,187 | INFO     | will attempt to kill all subprocesses of pid=3883244
[2025-07-27 19:23:49] 2025-07-27 17:23:16,873 | INFO     | process IDs to be killed: [3883244] (in reverse order)
[2025-07-27 19:23:49] 2025-07-27 17:23:17,121 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:23:49] 2025-07-27 17:23:17,121 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:23:49] 2025-07-27 17:23:17,147 | INFO     | did not find any defunct processes belonging to 3883244
[2025-07-27 19:23:49] 2025-07-27 17:23:17,169 | INFO     | did not find any defunct processes belonging to 3883244
[2025-07-27 19:23:49] 2025-07-27 17:23:17,170 | INFO     | ready for new job
[2025-07-27 19:23:49] 2025-07-27 17:23:17,170 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:23:49] 2025-07-27 17:23:17,172 | INFO     | ***************************************
[2025-07-27 19:23:49] 2025-07-27 17:23:17,172 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:23:49] 2025-07-27 17:23:17,172 | INFO     | ***************************************
[2025-07-27 19:23:49] 2025-07-27 17:23:17,172 | INFO     | 
[2025-07-27 19:23:49] 2025-07-27 17:23:17,180 | INFO     | architecture information:
[2025-07-27 19:23:49] 2025-07-27 17:23:17,181 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:23:49] 2025-07-27 17:23:17,200 | INFO     | cat /etc/os-release:
[2025-07-27 19:23:49] NAME="CentOS Linux"
[2025-07-27 19:23:49] VERSION="7 (Core)"
[2025-07-27 19:23:49] ID="centos"
[2025-07-27 19:23:49] ID_LIKE="rhel fedora"
[2025-07-27 19:23:49] VERSION_ID="7"
[2025-07-27 19:23:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:23:49] ANSI_COLOR="0;31"
[2025-07-27 19:23:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:23:49] HOME_URL="https://www.centos.org/"
[2025-07-27 19:23:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:23:49] 
[2025-07-27 19:23:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:23:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:23:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:23:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:23:49] 
[2025-07-27 19:23:49] 2025-07-27 17:23:17,201 | INFO     | ***************************************
[2025-07-27 19:23:49] 2025-07-27 17:23:17,703 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-07-27 19:23:49] 2025-07-27 17:23:17,731 | INFO     | sufficient remaining disk space (3266204139520 B)
[2025-07-27 19:23:49] 2025-07-27 17:23:17,731 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:23:49] 2025-07-27 17:23:17,731 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:23:49] 2025-07-27 17:23:17,731 | INFO     | update_server=False
[2025-07-27 19:23:49] 2025-07-27 17:23:17,731 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:23:49] 2025-07-27 17:23:17,732 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:23:49] 2025-07-27 17:23:17,732 | INFO     | aborting loop
[2025-07-27 19:23:49] 2025-07-27 17:23:17,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:23:49] 2025-07-27 17:23:17,866 | INFO     | all payload control threads have been joined
[2025-07-27 19:23:49] 2025-07-27 17:23:18,171 | INFO     | all job control threads have been joined
[2025-07-27 19:23:49] 2025-07-27 17:23:18,515 | INFO     | all data control threads have been joined
[2025-07-27 19:23:49] 2025-07-27 17:23:18,735 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:18,737 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:18,803 | INFO     | [job] validate thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:18,870 | INFO     | [payload] control thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:18,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:23:49] 2025-07-27 17:23:19,036 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:19,082 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:19,176 | INFO     | [job] control thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:19,315 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:19,442 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:19,516 | INFO     | [data] control thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:19,529 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:19,738 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:19,739 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:20,151 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:23:49] 2025-07-27 17:23:20,337 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:21,156 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:22,919 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:23:49] 2025-07-27 17:23:23,862 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23408820086592)>', '<ExcThread(monitor, started 23408098125568)>']
[2025-07-27 19:23:49] 2025-07-27 17:23:28,887 | INFO     | all workflow threads have been joined
[2025-07-27 19:23:49] 2025-07-27 17:23:28,887 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:23:49] 2025-07-27 17:23:28,888 | INFO     | traces error code: 0
[2025-07-27 19:23:49] 2025-07-27 17:23:28,888 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:23:49] 2025-07-27 17:23:48,548 | INFO     | PID=3863451 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:23:49] 2025-07-27 17:23:48,549 | INFO     | .. there are 23 such processes running
[2025-07-27 19:23:49] 2025-07-27 17:23:48,550 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:23:49] 2025-07-27 17:23:48,550 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:23:49] 2025-07-27 17:23:48,550 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:23:49] 2025-07-27 17:23:48,550 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:23:49] 2025-07-27 17:23:48,550 | INFO     | [monitor] control thread has ended
[2025-07-27 19:23:49] 2025-07-27 17:23:48,740 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:23:49] 2025-07-27 17:23:48,744 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:23:49] 2025-07-27 17:23:48,748 [wrapper] pilotpid: 3863451
[2025-07-27 19:23:49] 2025-07-27 17:23:48,752 [wrapper] Pilot exit status: 0
[2025-07-27 19:23:49] 2025-07-27 17:23:48,767 [wrapper] pandaids: 6745015445
[2025-07-27 19:23:49] 2025-07-27 17:23:48,922 [wrapper] cleanup supervisor_pilot 3863457 3863452
[2025-07-27 19:23:49] 2025-07-27 17:23:48,926 [wrapper] Test setup, not cleaning
[2025-07-27 19:23:49] 2025-07-27 17:23:48,931 [wrapper] apfmon messages muted
[2025-07-27 19:23:49] 2025-07-27 17:23:48,934 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:23:49] 2025-07-27 17:23:48,938 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:23:49]  *** Error codes and diagnostics ***
[2025-07-27 19:23:49]     "exeErrorCode": 65,
[2025-07-27 19:23:49]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"ISF_Kernel_FullG4MT_QS                                16     3   FATAL  Standard std::exception is caught\"",
[2025-07-27 19:23:49]     "pilotErrorCode": 1305,
[2025-07-27 19:23:49]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"ISF_Kernel_FullG4MT_QS                                16     3   FATAL  Standard st",
[2025-07-27 19:23:49]  *** Listing of results directory ***
[2025-07-27 19:23:49] total 146412
[2025-07-27 19:23:49] -rw-r--r-- 1 boinc boinc    530466 Jul 25 13:25 pilot3.tar.gz
[2025-07-27 19:23:49] -rw-r--r-- 1 boinc boinc      5112 Jul 25 13:26 queuedata.json
[2025-07-27 19:23:49] -rwx------ 1 boinc boinc     36292 Jul 25 13:27 runpilot2-wrapper.sh
[2025-07-27 19:23:49] -rw-r--r-- 1 boinc boinc       100 Jul 27 19:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:23:49] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 19:10 run_atlas
[2025-07-27 19:23:49] -rw-r--r-- 1 boinc boinc       105 Jul 27 19:10 job.xml
[2025-07-27 19:23:49] -rw-r--r-- 2 boinc boinc 145481413 Jul 27 19:10 EVNT.45743347._001075.pool.root.1
[2025-07-27 19:23:49] -rw-r--r-- 1 boinc boinc      6686 Jul 27 19:10 init_data.xml
[2025-07-27 19:23:49] -rw-r--r-- 2 boinc boinc     15095 Jul 27 19:10 start_atlas.sh
[2025-07-27 19:23:49] drwxrwx--x 2 boinc boinc      4096 Jul 27 19:10 shared
[2025-07-27 19:23:49] -rw-r--r-- 2 boinc boinc    542887 Jul 27 19:10 input.tar.gz
[2025-07-27 19:23:49] -rw-r--r-- 1 boinc boinc         0 Jul 27 19:10 boinc_lockfile
[2025-07-27 19:23:49] -rw-r--r-- 1 boinc boinc      2561 Jul 27 19:10 pandaJob.out
[2025-07-27 19:23:49] -rw------- 1 boinc boinc    980125 Jul 27 19:10 agis_schedconf.cvmfs.json
[2025-07-27 19:23:49] -rw------- 1 boinc boinc   1593052 Jul 27 19:10 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:23:49] drwx------ 4 boinc boinc      4096 Jul 27 19:10 pilot3
[2025-07-27 19:23:49] -rw-r--r-- 1 boinc boinc       527 Jul 27 19:20 boinc_task_state.xml
[2025-07-27 19:23:49] -rw------- 1 boinc boinc      1011 Jul 27 19:21 memory_monitor_summary.json
[2025-07-27 19:23:49] -rw------- 1 boinc boinc    159291 Jul 27 19:21 log.45743349._020362.job.log.tgz.1
[2025-07-27 19:23:49] -rw------- 1 boinc boinc     11766 Jul 27 19:23 heartbeat.json
[2025-07-27 19:23:49] -rw-r--r-- 1 boinc boinc      8192 Jul 27 19:23 boinc_mmap_file
[2025-07-27 19:23:49] -rw-r--r-- 1 boinc boinc        25 Jul 27 19:23 wrapper_checkpoint.txt
[2025-07-27 19:23:49] -rw------- 1 boinc boinc       823 Jul 27 19:23 pilotlog.txt
[2025-07-27 19:23:49] -rw------- 1 boinc boinc        95 Jul 27 19:23 pilot_heartbeat.json
[2025-07-27 19:23:49] -rw------- 1 boinc boinc    126633 Jul 27 19:23 log.45743349._020362.job.log.1
[2025-07-27 19:23:49] -rw------- 1 boinc boinc       188 Jul 27 19:23 output.list
[2025-07-27 19:23:49] -rw-r--r-- 1 boinc boinc       620 Jul 27 19:23 runtime_log
[2025-07-27 19:23:49] -rw------- 1 boinc boinc    307200 Jul 27 19:23 result.tar.gz
[2025-07-27 19:23:49] -rw-r--r-- 1 boinc boinc      8873 Jul 27 19:23 runtime_log.err
[2025-07-27 19:23:49] -rw------- 1 boinc boinc       655 Jul 27 19:23 Ps2NDmOlVz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKQPLDmnl2dkn.diag
[2025-07-27 19:23:49] -rw-r--r-- 1 boinc boinc     22302 Jul 27 19:23 stderr.txt
[2025-07-27 19:23:49] No HITS result produced
[2025-07-27 19:23:49]  *** Contents of shared directory: ***
[2025-07-27 19:23:49] total 142924
[2025-07-27 19:23:49] -rw-r--r-- 2 boinc boinc 145481413 Jul 27 19:10 ATLAS.root_0
[2025-07-27 19:23:49] -rw-r--r-- 2 boinc boinc     15095 Jul 27 19:10 start_atlas.sh
[2025-07-27 19:23:49] -rw-r--r-- 2 boinc boinc    542887 Jul 27 19:10 input.tar.gz
[2025-07-27 19:23:49] -rw------- 1 boinc boinc    307200 Jul 27 19:23 result.tar.gz
19:23:50 (3857171): run_atlas exited; CPU time 1476.302061
19:23:50 (3857171): called boinc_finish(0)

</stderr_txt>
]]>

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