Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:44:27 (1900018): wrapper (7.7.26015): starting
14:44:27 (1900018): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 14:44:27] Arguments: --nthreads 4
[2025-07-27 14:44:27] Threads: 4
[2025-07-27 14:44:27] Checking for CVMFS
[2025-07-27 14:44:27] No cvmfs_config command found, will try listing directly
[2025-07-27 14:44:27] CVMFS is ok
[2025-07-27 14:44:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 14:44:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 14:44:27] Further information can be found at the LHC@home message board.
[2025-07-27 14:44:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 14:44:27] Checking for apptainer binary...
[2025-07-27 14:44:27] which: no apptainer in ((null))
[2025-07-27 14:44:27] apptainer is not installed, using version from CVMFS
[2025-07-27 14:44:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 14:44:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-07-27 14:44:27] apptainer works
[2025-07-27 14:44:27] Set ATHENA_PROC_NUMBER=4
[2025-07-27 14:44:27] Set ATHENA_CORE_NUMBER=4
[2025-07-27 14:44:27] Starting ATLAS job with PandaID=6745055940
[2025-07-27 14:44:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:15:30 (1943842): wrapper (7.7.26015): starting
15:15:30 (1943842): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 15:15:30] Arguments: --nthreads 4
[2025-07-27 15:15:30] Threads: 4
[2025-07-27 15:15:30] This job has been restarted, cleaning up previous attempt
[2025-07-27 15:15:30] Checking for CVMFS
[2025-07-27 15:15:30] No cvmfs_config command found, will try listing directly
[2025-07-27 15:15:30] CVMFS is ok
[2025-07-27 15:15:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:15:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:15:30] Further information can be found at the LHC@home message board.
[2025-07-27 15:15:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:15:30] Checking for apptainer binary...
[2025-07-27 15:15:30] which: no apptainer in ((null))
[2025-07-27 15:15:30] apptainer is not installed, using version from CVMFS
[2025-07-27 15:15:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:15:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-07-27 15:15:30] apptainer works
[2025-07-27 15:15:30] Set ATHENA_PROC_NUMBER=4
[2025-07-27 15:15:30] Set ATHENA_CORE_NUMBER=4
[2025-07-27 15:15:30] Starting ATLAS job with PandaID=6745055940
[2025-07-27 15:15:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:17:46]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:17:46] 2025-07-27 17:17:12,837 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2583.7946
[2025-07-27 19:17:46] 2025-07-27 17:17:12,844 | INFO     | using path: /scratch/boinc/var/slot20/slots/0/PanDA_Pilot-6745055940/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:17:46] 2025-07-27 17:17:12,845 | INFO     | extracted standard info from prmon json
[2025-07-27 19:17:46] 2025-07-27 17:17:12,845 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:17:46] 2025-07-27 17:17:12,846 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:17:46] 2025-07-27 17:17:12,846 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:17:46] 2025-07-27 17:17:12,846 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:17:46] 2025-07-27 17:17:12,851 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:17:46] 2025-07-27 17:17:12,852 | INFO     | sum of square deviations: 4127772278.0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,854 | INFO     | sum of deviations: -25075741591.000004
[2025-07-27 19:17:46] 2025-07-27 17:17:12,854 | INFO     | mean x: 1753629365.0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,854 | INFO     | mean y: 2368634.417721519
[2025-07-27 19:17:46] 2025-07-27 17:17:12,854 | INFO     | -- intersect: 10655465230.249218
[2025-07-27 19:17:46] 2025-07-27 17:17:12,854 | INFO     | intersect: 10655465230.249218
[2025-07-27 19:17:46] 2025-07-27 17:17:12,855 | INFO     | chi2: 1.4699589946618774
[2025-07-27 19:17:46] 2025-07-27 17:17:12,855 | INFO     | sum of square deviations: 3871990738.0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,857 | INFO     | sum of deviations: -24352235017.499996
[2025-07-27 19:17:46] 2025-07-27 17:17:12,857 | INFO     | mean x: 1753629212.5
[2025-07-27 19:17:46] 2025-07-27 17:17:12,857 | INFO     | mean y: 2369066.2198275863
[2025-07-27 19:17:46] 2025-07-27 17:17:12,857 | INFO     | -- intersect: 11031525282.231789
[2025-07-27 19:17:46] 2025-07-27 17:17:12,858 | INFO     | intersect: 11031525282.231789
[2025-07-27 19:17:46] 2025-07-27 17:17:12,858 | INFO     | chi2: 1.4682639790649727
[2025-07-27 19:17:46] 2025-07-27 17:17:12,858 | INFO     | current chi2=1.4682639790649727 (change=0.11531040002204615 %)
[2025-07-27 19:17:46] 2025-07-27 17:17:12,858 | INFO     | right removable region: 231
[2025-07-27 19:17:46] 2025-07-27 17:17:12,859 | INFO     | sum of square deviations: 3871990738.0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,860 | INFO     | sum of deviations: -51091918901.0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,861 | INFO     | mean x: 1753629517.5
[2025-07-27 19:17:46] 2025-07-27 17:17:12,861 | INFO     | mean y: 2383922.6379310344
[2025-07-27 19:17:46] 2025-07-27 17:17:12,861 | INFO     | -- intersect: 23141978811.43897
[2025-07-27 19:17:46] 2025-07-27 17:17:12,861 | INFO     | intersect: 23141978811.43897
[2025-07-27 19:17:46] 2025-07-27 17:17:12,862 | INFO     | chi2: 0.1800255879842571
[2025-07-27 19:17:46] 2025-07-27 17:17:12,862 | INFO     | current chi2=0.1800255879842571 (change=87.753019734699 %)
[2025-07-27 19:17:46] 2025-07-27 17:17:12,862 | INFO     | sum of square deviations: 3627000098.0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,864 | INFO     | sum of deviations: -40204032683.00001
[2025-07-27 19:17:46] 2025-07-27 17:17:12,864 | INFO     | mean x: 1753629670.0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,864 | INFO     | mean y: 2377141.5506607927
[2025-07-27 19:17:46] 2025-07-27 17:17:12,864 | INFO     | -- intersect: 19440751186.656216
[2025-07-27 19:17:46] 2025-07-27 17:17:12,864 | INFO     | intersect: 19440751186.656216
[2025-07-27 19:17:46] 2025-07-27 17:17:12,865 | INFO     | chi2: 0.13846507067065683
[2025-07-27 19:17:46] 2025-07-27 17:17:12,865 | INFO     | current chi2=0.13846507067065683 (change=23.085894499194563 %)
[2025-07-27 19:17:46] 2025-07-27 17:17:12,865 | INFO     | left removable region: 20
[2025-07-27 19:17:46] 2025-07-27 17:17:12,865 | INFO     | sum of square deviations: 2912836010.0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,867 | INFO     | sum of deviations: -25033716129.0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,867 | INFO     | mean x: 1753629792.0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,867 | INFO     | mean y: 2368170.739336493
[2025-07-27 19:17:46] 2025-07-27 17:17:12,867 | INFO     | -- intersect: 15073546313.81829
[2025-07-27 19:17:46] 2025-07-27 17:17:12,868 | INFO     | intersect: 15073546313.81829
[2025-07-27 19:17:46] 2025-07-27 17:17:12,868 | INFO     | chi2: 0.09253242205318903
[2025-07-27 19:17:46] 2025-07-27 17:17:12,868 | INFO     | -- intersect: 15073546313.81829
[2025-07-27 19:17:46] 2025-07-27 17:17:12,868 | INFO     | current memory leak: -8.59 B/s (using 211 data points, chi2=0.09)
[2025-07-27 19:17:46] 2025-07-27 17:17:12,869 | INFO     | could have reported an average CPU frequency of 2514 MHz (11 samples)
[2025-07-27 19:17:46] 2025-07-27 17:17:12,869 | INFO     | ..............................
[2025-07-27 19:17:46] 2025-07-27 17:17:12,869 | INFO     | . Timing measurements:
[2025-07-27 19:17:46] 2025-07-27 17:17:12,869 | INFO     | . get job = 0 s
[2025-07-27 19:17:46] 2025-07-27 17:17:12,869 | INFO     | . initial setup = 1 s
[2025-07-27 19:17:46] 2025-07-27 17:17:12,870 | INFO     | . payload setup = 6 s
[2025-07-27 19:17:46] 2025-07-27 17:17:12,870 | INFO     | . stage-in = 0 s
[2025-07-27 19:17:46] 2025-07-27 17:17:12,870 | INFO     | . payload execution = 14453 s
[2025-07-27 19:17:46] 2025-07-27 17:17:12,870 | INFO     | . stage-out = 1 s
[2025-07-27 19:17:46] 2025-07-27 17:17:12,870 | INFO     | . log creation = 0 s
[2025-07-27 19:17:46] 2025-07-27 17:17:12,870 | INFO     | ..............................
[2025-07-27 19:17:46] 2025-07-27 17:17:12,983 | INFO     | 
[2025-07-27 19:17:46] 2025-07-27 17:17:12,984 | INFO     | job summary report
[2025-07-27 19:17:46] 2025-07-27 17:17:12,984 | INFO     | --------------------------------------------------
[2025-07-27 19:17:46] 2025-07-27 17:17:12,984 | INFO     | PanDA job id: 6745055940
[2025-07-27 19:17:46] 2025-07-27 17:17:12,984 | INFO     | task id: 45743349
[2025-07-27 19:17:46] 2025-07-27 17:17:12,984 | INFO     | errors: (none)
[2025-07-27 19:17:46] 2025-07-27 17:17:12,985 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:17:46] 2025-07-27 17:17:12,985 | INFO     | pilot state: finished 
[2025-07-27 19:17:46] 2025-07-27 17:17:12,985 | INFO     | transexitcode: 0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,985 | INFO     | exeerrorcode: 0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,985 | INFO     | exeerrordiag: 
[2025-07-27 19:17:46] 2025-07-27 17:17:12,985 | INFO     | exitcode: 0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,985 | INFO     | exitmsg: OK
[2025-07-27 19:17:46] 2025-07-27 17:17:12,985 | INFO     | cpuconsumptiontime: 56024 s
[2025-07-27 19:17:46] 2025-07-27 17:17:12,986 | INFO     | nevents: 400
[2025-07-27 19:17:46] 2025-07-27 17:17:12,986 | INFO     | neventsw: 0
[2025-07-27 19:17:46] 2025-07-27 17:17:12,986 | INFO     | pid: 1954702
[2025-07-27 19:17:46] 2025-07-27 17:17:12,986 | INFO     | pgrp: 1954702
[2025-07-27 19:17:46] 2025-07-27 17:17:12,986 | INFO     | corecount: 4
[2025-07-27 19:17:46] 2025-07-27 17:17:12,986 | INFO     | event service: False
[2025-07-27 19:17:46] 2025-07-27 17:17:12,986 | INFO     | sizes: {0: 2397204, 1: 2397459, 5: 2397721, 12: 2397777, 14464: 2428700, 14466: 2437720, 14469: 2437904, 14477: 2438098}
[2025-07-27 19:17:46] 2025-07-27 17:17:12,986 | INFO     | --------------------------------------------------
[2025-07-27 19:17:46] 2025-07-27 17:17:12,986 | INFO     | 
[2025-07-27 19:17:46] 2025-07-27 17:17:12,987 | INFO     | executing command: ls -lF /scratch/boinc/var/slot20/slots/0
[2025-07-27 19:17:46] 2025-07-27 17:17:13,007 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,007 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,008 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,008 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,008 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,008 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,008 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,008 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,008 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,009 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,009 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,009 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,009 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,009 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,009 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,009 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,010 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,010 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:17:46] 2025-07-27 17:17:13,010 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,010 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:17:46] 2025-07-27 17:17:13,010 | INFO     | job 6745055940 has completed (purged errors)
[2025-07-27 19:17:46] 2025-07-27 17:17:13,011 | INFO     | overall cleanup function is called
[2025-07-27 19:17:46] 2025-07-27 17:17:13,591 | INFO     | PID=1947786 has CPU usage=11.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 19:17:46] 2025-07-27 17:17:13,591 | INFO     | .. there are 7 such processes running
[2025-07-27 19:17:46] 2025-07-27 17:17:14,017 | INFO     | --- collectZombieJob: --- 10, [1954702]
[2025-07-27 19:17:46] 2025-07-27 17:17:14,017 | INFO     | zombie collector waiting for pid 1954702
[2025-07-27 19:17:46] 2025-07-27 17:17:14,018 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:17:46] 2025-07-27 17:17:14,018 | INFO     | collected zombie processes
[2025-07-27 19:17:46] 2025-07-27 17:17:14,018 | INFO     | will attempt to kill all subprocesses of pid=1954702
[2025-07-27 19:17:46] 2025-07-27 17:17:14,316 | INFO     | process IDs to be killed: [1954702] (in reverse order)
[2025-07-27 19:17:46] 2025-07-27 17:17:14,393 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:17:46] 2025-07-27 17:17:14,394 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:17:46] 2025-07-27 17:17:14,401 | INFO     | did not find any defunct processes belonging to 1954702
[2025-07-27 19:17:46] 2025-07-27 17:17:14,407 | INFO     | did not find any defunct processes belonging to 1954702
[2025-07-27 19:17:46] 2025-07-27 17:17:14,407 | INFO     | ready for new job
[2025-07-27 19:17:46] 2025-07-27 17:17:14,408 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:17:46] 2025-07-27 17:17:14,409 | INFO     | ***************************************
[2025-07-27 19:17:46] 2025-07-27 17:17:14,410 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:17:46] 2025-07-27 17:17:14,410 | INFO     | ***************************************
[2025-07-27 19:17:46] 2025-07-27 17:17:14,410 | INFO     | 
[2025-07-27 19:17:46] 2025-07-27 17:17:14,412 | INFO     | architecture information:
[2025-07-27 19:17:46] 2025-07-27 17:17:14,413 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:17:46] 2025-07-27 17:17:14,424 | INFO     | cat /etc/os-release:
[2025-07-27 19:17:46] NAME="CentOS Linux"
[2025-07-27 19:17:46] VERSION="7 (Core)"
[2025-07-27 19:17:46] ID="centos"
[2025-07-27 19:17:46] ID_LIKE="rhel fedora"
[2025-07-27 19:17:46] VERSION_ID="7"
[2025-07-27 19:17:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:17:46] ANSI_COLOR="0;31"
[2025-07-27 19:17:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:17:46] HOME_URL="https://www.centos.org/"
[2025-07-27 19:17:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:17:46] 
[2025-07-27 19:17:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:17:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:17:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:17:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:17:46] 
[2025-07-27 19:17:46] 2025-07-27 17:17:14,424 | INFO     | ***************************************
[2025-07-27 19:17:46] 2025-07-27 17:17:14,927 | INFO     | executing command: df -mP /scratch/boinc/var/slot20/slots/0
[2025-07-27 19:17:46] 2025-07-27 17:17:14,940 | INFO     | sufficient remaining disk space (1654449504256 B)
[2025-07-27 19:17:46] 2025-07-27 17:17:14,940 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:17:46] 2025-07-27 17:17:14,940 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:17:46] 2025-07-27 17:17:14,941 | INFO     | update_server=False
[2025-07-27 19:17:46] 2025-07-27 17:17:14,941 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:17:46] 2025-07-27 17:17:14,941 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:17:46] 2025-07-27 17:17:15,009 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 19:17:46] 2025-07-27 17:17:15,009 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 19:17:46] 2025-07-27 17:17:15,010 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:17:46] 2025-07-27 17:17:15,010 | INFO     | will abort loop
[2025-07-27 19:17:46] 2025-07-27 17:17:15,172 | INFO     | all payload control threads have been joined
[2025-07-27 19:17:46] 2025-07-27 17:17:15,428 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:17:46] 2025-07-27 17:17:15,455 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:17:46] 2025-07-27 17:17:15,697 | INFO     | all data control threads have been joined
[2025-07-27 19:17:46] 2025-07-27 17:17:15,946 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:15,946 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:16,015 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:16,113 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:16,123 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:16,178 | INFO     | [payload] control thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:16,464 | INFO     | all job control threads have been joined
[2025-07-27 19:17:46] 2025-07-27 17:17:16,471 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:16,486 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:16,703 | INFO     | [data] control thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:17,004 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:17,004 | INFO     | [job] validate thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:17,237 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:17,461 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:17,469 | INFO     | [job] control thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:19,432 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:25,853 | INFO     | job.realtimelogging is not enabled
[2025-07-27 19:17:46] 2025-07-27 17:17:26,858 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:17:46] 2025-07-27 17:17:27,931 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23058612942656)>', '<ExcThread(monitor, started 23058377045760)>']
[2025-07-27 19:17:46] 2025-07-27 17:17:32,955 | INFO     | all workflow threads have been joined
[2025-07-27 19:17:46] 2025-07-27 17:17:32,956 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:17:46] 2025-07-27 17:17:32,956 | INFO     | traces error code: 0
[2025-07-27 19:17:46] 2025-07-27 17:17:32,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:17:46] 2025-07-27 17:17:46,017 | INFO     | PID=1947786 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:17:46] 2025-07-27 17:17:46,017 | INFO     | .. there are 7 such processes running
[2025-07-27 19:17:46] 2025-07-27 17:17:46,018 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:17:46] 2025-07-27 17:17:46,018 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:17:46] 2025-07-27 17:17:46,018 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:17:46] 2025-07-27 17:17:46,019 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:17:46] 2025-07-27 17:17:46,019 | INFO     | [monitor] control thread has ended
[2025-07-27 19:17:46] 2025-07-27 17:17:46,152 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:17:46] 2025-07-27 17:17:46,155 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:17:46] 2025-07-27 17:17:46,157 [wrapper] pilotpid: 1947786
[2025-07-27 19:17:46] 2025-07-27 17:17:46,159 [wrapper] Pilot exit status: 0
[2025-07-27 19:17:46] 2025-07-27 17:17:46,178 [wrapper] pandaids: 6745055940 6745055940
[2025-07-27 19:17:46] 2025-07-27 17:17:46,222 [wrapper] cleanup supervisor_pilot 2317249 1947787
[2025-07-27 19:17:46] 2025-07-27 17:17:46,225 [wrapper] Test setup, not cleaning
[2025-07-27 19:17:46] 2025-07-27 17:17:46,227 [wrapper] apfmon messages muted
[2025-07-27 19:17:46] 2025-07-27 17:17:46,229 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:17:46] 2025-07-27 17:17:46,231 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:17:46]  *** Error codes and diagnostics ***
[2025-07-27 19:17:46]     "exeErrorCode": 0,
[2025-07-27 19:17:46]     "exeErrorDiag": "",
[2025-07-27 19:17:46]     "pilotErrorCode": 0,
[2025-07-27 19:17:46]     "pilotErrorDiag": "",
[2025-07-27 19:17:46]  *** Listing of results directory ***
[2025-07-27 19:17:46] total 666648
[2025-07-27 19:17:46] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-27 19:17:46] -rw-r--r-- 1 boinc boinc    530466 Jul 25 15:22 pilot3.tar.gz
[2025-07-27 19:17:46] -rw-r--r-- 1 boinc boinc      5112 Jul 25 15:50 queuedata.json
[2025-07-27 19:17:46] -rwx------ 1 boinc boinc     36292 Jul 25 15:50 runpilot2-wrapper.sh
[2025-07-27 19:17:46] -rw-r--r-- 1 boinc boinc       100 Jul 27 14:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:17:46] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 14:33 run_atlas
[2025-07-27 19:17:46] -rw-r--r-- 1 boinc boinc       105 Jul 27 14:33 job.xml
[2025-07-27 19:17:46] -rw-r--r-- 3 boinc boinc 232566459 Jul 27 14:44 EVNT.45743347._001259.pool.root.1
[2025-07-27 19:17:46] -rw-r--r-- 3 boinc boinc 232566459 Jul 27 14:44 ATLAS.root_0
[2025-07-27 19:17:46] -rw-r--r-- 2 boinc boinc    542881 Jul 27 14:44 input.tar.gz
[2025-07-27 19:17:46] -rw-r--r-- 2 boinc boinc     15095 Jul 27 14:44 start_atlas.sh
[2025-07-27 19:17:46] drwxrwx--x 2 boinc boinc      4096 Jul 27 14:44 shared
[2025-07-27 19:17:46] -rw-r--r-- 1 boinc boinc         0 Jul 27 14:44 boinc_lockfile
[2025-07-27 19:17:46] -rw-r--r-- 1 boinc boinc      2560 Jul 27 15:15 pandaJob.out
[2025-07-27 19:17:46] -rw------- 1 boinc boinc    980117 Jul 27 15:15 agis_schedconf.cvmfs.json
[2025-07-27 19:17:46] -rw-r--r-- 1 boinc boinc      6427 Jul 27 15:33 init_data.xml
[2025-07-27 19:17:46] -rw------- 1 boinc boinc 210273621 Jul 27 19:16 HITS.45743349._022114.pool.root.1
[2025-07-27 19:17:46] -rw-r--r-- 1 boinc boinc       529 Jul 27 19:16 boinc_task_state.xml
[2025-07-27 19:17:46] -rw------- 1 boinc boinc      1048 Jul 27 19:16 memory_monitor_summary.json
[2025-07-27 19:17:46] -rw------- 1 boinc boinc   1593052 Jul 27 19:17 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:17:46] -rw------- 1 boinc boinc    328379 Jul 27 19:17 log.45743349._022114.job.log.tgz.1
[2025-07-27 19:17:46] -rw------- 1 boinc boinc      7853 Jul 27 19:17 heartbeat.json
[2025-07-27 19:17:46] -rw-r--r-- 1 boinc boinc      8192 Jul 27 19:17 boinc_mmap_file
[2025-07-27 19:17:46] -rw-r--r-- 1 boinc boinc        27 Jul 27 19:17 wrapper_checkpoint.txt
[2025-07-27 19:17:46] -rw------- 1 boinc boinc        97 Jul 27 19:17 pilot_heartbeat.json
[2025-07-27 19:17:46] -rw------- 1 boinc boinc       822 Jul 27 19:17 pilotlog.txt
[2025-07-27 19:17:46] -rw------- 1 boinc boinc   1350668 Jul 27 19:17 log.45743349._022114.job.log.1
[2025-07-27 19:17:46] -rw------- 1 boinc boinc       357 Jul 27 19:17 output.list
[2025-07-27 19:17:46] -rw-r--r-- 1 boinc boinc       620 Jul 27 19:17 runtime_log
[2025-07-27 19:17:46] -rw------- 1 boinc boinc   1699840 Jul 27 19:17 result.tar.gz
[2025-07-27 19:17:46] -rw-r--r-- 1 boinc boinc      9104 Jul 27 19:17 runtime_log.err
[2025-07-27 19:17:46] -rw------- 1 boinc boinc       795 Jul 27 19:17 1LdKDm7zXz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbgPLDmNsyD4n.diag
[2025-07-27 19:17:46] -rw-r--r-- 1 boinc boinc     22914 Jul 27 19:17 stderr.txt
[2025-07-27 19:17:46] HITS file was successfully produced:
[2025-07-27 19:17:46] -rw------- 1 boinc boinc 210273621 Jul 27 19:16 shared/HITS.pool.root.1
[2025-07-27 19:17:46]  *** Contents of shared directory: ***
[2025-07-27 19:17:46] total 434680
[2025-07-27 19:17:46] -rw-r--r-- 3 boinc boinc 232566459 Jul 27 14:44 ATLAS.root_0
[2025-07-27 19:17:46] -rw-r--r-- 2 boinc boinc    542881 Jul 27 14:44 input.tar.gz
[2025-07-27 19:17:46] -rw-r--r-- 2 boinc boinc     15095 Jul 27 14:44 start_atlas.sh
[2025-07-27 19:17:46] -rw------- 1 boinc boinc 210273621 Jul 27 19:16 HITS.pool.root.1
[2025-07-27 19:17:46] -rw------- 1 boinc boinc   1699840 Jul 27 19:17 result.tar.gz
19:17:47 (1943842): run_atlas exited; CPU time 56552.744169
19:17:47 (1943842): called boinc_finish(0)

</stderr_txt>
]]>

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