Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:40:44 (1569773): wrapper (7.7.26015): starting
12:40:44 (1569773): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 12:40:44] Arguments: --nthreads 12
[2025-07-25 12:40:44] Threads: 12
[2025-07-25 12:40:44] Checking for CVMFS
[2025-07-25 12:40:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 12:40:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 12:40:45] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 12:40:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 12:40:46] 2.11.5.0 6746 34693 210012 148751 1 315 35585227 45568001 13596 130560 0 240271655 99.704 203940726 25030 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-25 12:40:46] CVMFS is ok
[2025-07-25 12:40:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 12:40:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 12:40:46] Further information can be found at the LHC@home message board.
[2025-07-25 12:40:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 12:40:46] Checking for apptainer binary...
[2025-07-25 12:40:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 12:40:46] Running /usr/bin/apptainer --version
[2025-07-25 12:40:46] apptainer version 1.4.1-1.el9
[2025-07-25 12:40:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 12:40:47] wns0081.triumf.lcg
[2025-07-25 12:40:47] apptainer works
[2025-07-25 12:40:47] Set ATHENA_PROC_NUMBER=12
[2025-07-25 12:40:47] Set ATHENA_CORE_NUMBER=12
[2025-07-25 12:40:47] Starting ATLAS job with PandaID=6745058702
[2025-07-25 12:40:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 12:44:53]  *** The last 200 lines of the pilot log: ***
[2025-07-25 12:44:53] 2025-07-25 19:44:20,840 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 12:44:53] 2025-07-25 19:44:20,840 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | WARNING  | wrong length of table data, x=[1753472518.0], y=[1343.0] (must be same and length>=4)
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | INFO     | could have reported an average CPU frequency of 2429 MHz (4 samples)
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | INFO     | ..............................
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | INFO     | . Timing measurements:
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . get job = 0 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . initial setup = 3 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . payload setup = 13 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . stage-in = 0 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . payload execution = 28 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . stage-out = 0 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . log creation = 0 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | ..............................
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745058702/pilotlog.txt
[2025-07-25 12:44:53] 2025-07-25 19:44:20,853 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-25 12:44:53] - Log from pilotlog.txt -
[2025-07-25 12:44:53] 2025-07-25 19:44:20,840 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6745058702/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 12:44:53] 2025-07-25 19:44:20,840 | INFO     | extracted standard info from prmon json
[2025-07-25 12:44:53] 2025-07-25 19:44:20,840 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 12:44:53] 2025-07-25 19:44:20,840 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | WARNING  | wrong length of table data, x=[1753472518.0], y=[1343.0] (must be same and length>=4)
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | INFO     | could have reported an average CPU frequency of 2429 MHz (4 samples)
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | INFO     | ..............................
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | INFO     | . Timing measurements:
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . get job = 0 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . initial setup = 3 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . payload setup = 13 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . stage-in = 0 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . payload execution = 28 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . stage-out = 0 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . log creation = 0 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | ..............................
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745058702/pilotlog.txt
[2025-07-25 12:44:53] 2025-07-25 19:44:20,854 | WARNING  | 
[2025-07-25 12:44:53] [begin log extracts]
[2025-07-25 12:44:53] - Log from pilotlog.txt -
[2025-07-25 12:44:53] 2025-07-25 19:44:20,840 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6745058702/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 12:44:53] 2025-07-25 19:44:20,840 | INFO     | extracted standard info from prmon json
[2025-07-25 12:44:53] 2025-07-25 19:44:20,840 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 12:44:53] 2025-07-25 19:44:20,840 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | WARNING  | wrong length of table data, x=[1753472518.0], y=[1343.0] (must be same and length>=4)
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | INFO     | could have reported an average CPU frequency of 2429 MHz (4 samples)
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | INFO     | ..............................
[2025-07-25 12:44:53] 2025-07-25 19:44:20,841 | INFO     | . Timing measurements:
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . get job = 0 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . initial setup = 3 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . payload setup = 13 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . stage-in = 0 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . payload execution = 28 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . stage-out = 0 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | . log creation = 0 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | ..............................
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 12:44:53] 2025-07-25 19:44:20,842 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745058702/pilotlog.txt
[2025-07-25 12:44:53] [end log extracts]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,854 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-25 12:44:53] 2025-07-25 19:44:20,855 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-25 12:44:53] 2025-07-25 19:44:20,912 | INFO     | 
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | job summary report
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | --------------------------------------------------
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | PanDA job id: 6745058702
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | task id: 45743349
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-25 12:42:08,664 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | pilot state: failed 
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | transexitcode: 65
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | exeerrorcode: 65
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | exitcode: 65
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | cpuconsumptiontime: 16 s
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | nevents: 0
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | neventsw: 0
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | pid: 1586797
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | pgrp: 1586797
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | corecount: 12
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | event service: False
[2025-07-25 12:44:53] 2025-07-25 19:44:20,913 | INFO     | sizes: {0: 2397470, 6: 2397732, 11: 2397760, 46: 2420990, 48: 2425282, 49: 2425310, 171: 2425664}
[2025-07-25 12:44:53] 2025-07-25 19:44:20,914 | INFO     | --------------------------------------------------
[2025-07-25 12:44:53] 2025-07-25 19:44:20,914 | INFO     | 
[2025-07-25 12:44:53] 2025-07-25 19:44:20,914 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-25 12:44:53] 2025-07-25 19:44:20,929 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,929 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,929 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,929 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,929 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,929 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,929 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,929 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,929 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,930 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,930 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,930 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,930 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,930 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,930 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,930 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,930 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,930 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 12:44:53] 2025-07-25 19:44:20,930 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,930 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 12:44:53] 2025-07-25 19:44:20,930 | INFO     | job 6745058702 has completed (purged errors)
[2025-07-25 12:44:53] 2025-07-25 19:44:20,930 | INFO     | overall cleanup function is called
[2025-07-25 12:44:53] 2025-07-25 19:44:21,937 | INFO     | --- collectZombieJob: --- 10, [1586797]
[2025-07-25 12:44:53] 2025-07-25 19:44:21,937 | INFO     | zombie collector waiting for pid 1586797
[2025-07-25 12:44:53] 2025-07-25 19:44:21,937 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 12:44:53] 2025-07-25 19:44:21,937 | INFO     | collected zombie processes
[2025-07-25 12:44:53] 2025-07-25 19:44:21,937 | INFO     | will attempt to kill all subprocesses of pid=1586797
[2025-07-25 12:44:53] 2025-07-25 19:44:22,311 | INFO     | process IDs to be killed: [1586797] (in reverse order)
[2025-07-25 12:44:53] 2025-07-25 19:44:22,379 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 12:44:53] 2025-07-25 19:44:22,380 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 12:44:53] 2025-07-25 19:44:22,399 | INFO     | did not find any defunct processes belonging to 1586797
[2025-07-25 12:44:53] 2025-07-25 19:44:22,419 | INFO     | did not find any defunct processes belonging to 1586797
[2025-07-25 12:44:53] 2025-07-25 19:44:22,419 | INFO     | ready for new job
[2025-07-25 12:44:53] 2025-07-25 19:44:22,419 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 12:44:53] 2025-07-25 19:44:22,445 | INFO     | ***************************************
[2025-07-25 12:44:53] 2025-07-25 19:44:22,445 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 12:44:53] 2025-07-25 19:44:22,445 | INFO     | ***************************************
[2025-07-25 12:44:53] 2025-07-25 19:44:22,445 | INFO     | 
[2025-07-25 12:44:53] 2025-07-25 19:44:22,468 | INFO     | architecture information:
[2025-07-25 12:44:53] 2025-07-25 19:44:22,472 | INFO     | executing command: cat /etc/os-release
[2025-07-25 12:44:53] 2025-07-25 19:44:22,516 | INFO     | cat /etc/os-release:
[2025-07-25 12:44:53] NAME="CentOS Linux"
[2025-07-25 12:44:53] VERSION="7 (Core)"
[2025-07-25 12:44:53] ID="centos"
[2025-07-25 12:44:53] ID_LIKE="rhel fedora"
[2025-07-25 12:44:53] VERSION_ID="7"
[2025-07-25 12:44:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 12:44:53] ANSI_COLOR="0;31"
[2025-07-25 12:44:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 12:44:53] HOME_URL="https://www.centos.org/"
[2025-07-25 12:44:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 12:44:53] 
[2025-07-25 12:44:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 12:44:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 12:44:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 12:44:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 12:44:53] 
[2025-07-25 12:44:53] 2025-07-25 19:44:22,517 | INFO     | ***************************************
[2025-07-25 12:44:53] 2025-07-25 19:44:23,020 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-25 12:44:53] 2025-07-25 19:44:23,035 | INFO     | sufficient remaining disk space (1999824224256 B)
[2025-07-25 12:44:53] 2025-07-25 19:44:23,036 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 12:44:53] 2025-07-25 19:44:23,036 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 12:44:53] 2025-07-25 19:44:23,036 | INFO     | update_server=False
[2025-07-25 12:44:53] 2025-07-25 19:44:23,036 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 12:44:53] 2025-07-25 19:44:23,036 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 12:44:53] 2025-07-25 19:44:23,036 | INFO     | aborting loop
[2025-07-25 12:44:53] 2025-07-25 19:44:23,037 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 12:44:53] 2025-07-25 19:44:23,486 | INFO     | all data control threads have been joined
[2025-07-25 12:44:53] 2025-07-25 19:44:23,605 | INFO     | all payload control threads have been joined
[2025-07-25 12:44:53] 2025-07-25 19:44:23,884 | INFO     | all job control threads have been joined
[2025-07-25 12:44:53] 2025-07-25 19:44:24,044 | INFO     | [job] retrieve thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:24,045 | INFO     | [job] job monitor thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:24,176 | INFO     | [job] validate thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:24,276 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 12:44:53] 2025-07-25 19:44:24,281 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:24,477 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:24,492 | INFO     | [data] control thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:24,586 | INFO     | [payload] failed_post thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:24,611 | INFO     | [payload] control thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:24,890 | INFO     | [job] control thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:24,978 | INFO     | [data] copytool_in thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:24,983 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:25,135 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:25,252 | INFO     | [payload] validate_post thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:25,926 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 12:44:53] 2025-07-25 19:44:26,284 | INFO     | [data] copytool_out thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:26,932 | INFO     | [job] queue monitor thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:27,047 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 12:44:53] 2025-07-25 19:44:27,835 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140705558148928)>', '<ExcThread(monitor, started 140705158633216)>']
[2025-07-25 12:44:53] 2025-07-25 19:44:32,860 | INFO     | all workflow threads have been joined
[2025-07-25 12:44:53] 2025-07-25 19:44:32,860 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 12:44:53] 2025-07-25 19:44:32,860 | INFO     | traces error code: 0
[2025-07-25 12:44:53] 2025-07-25 19:44:32,861 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 12:44:53] 2025-07-25 19:44:52,850 | INFO     | PID=1573376 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 12:44:53] 2025-07-25 19:44:52,851 | INFO     | .. there are 21 such processes running
[2025-07-25 12:44:53] 2025-07-25 19:44:52,851 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 12:44:53] 2025-07-25 19:44:52,851 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 12:44:53] 2025-07-25 19:44:52,855 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 12:44:53] 2025-07-25 19:44:52,855 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 12:44:53] 2025-07-25 19:44:52,855 | INFO     | [monitor] control thread has ended
[2025-07-25 12:44:53] 2025-07-25 19:44:52,974 [wrapper] ==== pilot stdout END ====
[2025-07-25 12:44:53] 2025-07-25 19:44:52,976 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 12:44:53] 2025-07-25 19:44:52,978 [wrapper] pilotpid: 1573376
[2025-07-25 12:44:53] 2025-07-25 19:44:52,979 [wrapper] Pilot exit status: 0
[2025-07-25 12:44:53] 2025-07-25 19:44:53,058 [wrapper] pandaids: 6745058702
[2025-07-25 12:44:53] 2025-07-25 19:44:53,205 [wrapper] cleanup supervisor_pilot 1573382 1573377
[2025-07-25 12:44:53] 2025-07-25 19:44:53,220 [wrapper] Test setup, not cleaning
[2025-07-25 12:44:53] 2025-07-25 19:44:53,238 [wrapper] apfmon messages muted
[2025-07-25 12:44:53] 2025-07-25 19:44:53,253 [wrapper] ==== wrapper stdout END ====
[2025-07-25 12:44:53] 2025-07-25 19:44:53,268 [wrapper] ==== wrapper stderr END ====
[2025-07-25 12:44:53]  *** Error codes and diagnostics ***
[2025-07-25 12:44:53]     "exeErrorCode": 65,
[2025-07-25 12:44:53]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-25 12:44:53]     "pilotErrorCode": 1305,
[2025-07-25 12:44:53]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-25 12:44:53]  *** Listing of results directory ***
[2025-07-25 12:44:53] total 141580
[2025-07-25 12:44:53] -rw-r--r--. 1 boinc boinc      5112 Jul 25 09:58 queuedata.json
[2025-07-25 12:44:53] -rwx------. 1 boinc boinc     36292 Jul 25 10:00 runpilot2-wrapper.sh
[2025-07-25 12:44:53] -rw-r--r--. 1 boinc boinc    530466 Jul 25 10:00 pilot3.tar.gz
[2025-07-25 12:44:53] -rw-r--r--. 1 boinc boinc       100 Jul 25 12:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 12:44:53] -rwxr-xr-x. 1 boinc boinc      7986 Jul 25 12:40 run_atlas
[2025-07-25 12:44:53] -rw-r--r--. 1 boinc boinc       105 Jul 25 12:40 job.xml
[2025-07-25 12:44:53] -rw-r--r--. 1 boinc boinc      6595 Jul 25 12:40 init_data.xml
[2025-07-25 12:44:53] -rw-r--r--. 2 boinc boinc 140898728 Jul 25 12:40 EVNT.45743347._001368.pool.root.1
[2025-07-25 12:44:53] -rw-r--r--. 2 boinc boinc     15095 Jul 25 12:40 start_atlas.sh
[2025-07-25 12:44:53] drwxrwx--x. 2 boinc boinc      4096 Jul 25 12:40 shared
[2025-07-25 12:44:53] -rw-r--r--. 2 boinc boinc    542891 Jul 25 12:40 input.tar.gz
[2025-07-25 12:44:53] -rw-r--r--. 1 boinc boinc         0 Jul 25 12:40 boinc_lockfile
[2025-07-25 12:44:53] -rw-r--r--. 1 boinc boinc      2562 Jul 25 12:40 pandaJob.out
[2025-07-25 12:44:53] -rw-------. 1 boinc boinc    979993 Jul 25 12:41 agis_schedconf.cvmfs.json
[2025-07-25 12:44:53] -rw-------. 1 boinc boinc   1593052 Jul 25 12:41 agis_ddmendpoints.agis.ALL.json
[2025-07-25 12:44:53] drwx------. 4 boinc boinc      4096 Jul 25 12:41 pilot3
[2025-07-25 12:44:53] -rw-r--r--. 1 boinc boinc       522 Jul 25 12:42 boinc_task_state.xml
[2025-07-25 12:44:53] -rw-------. 1 boinc boinc       958 Jul 25 12:42 memory_monitor_summary.json
[2025-07-25 12:44:53] -rw-------. 1 boinc boinc     21075 Jul 25 12:42 log.45743349._024125.job.log.tgz.1
[2025-07-25 12:44:53] -rw-------. 1 boinc boinc        95 Jul 25 12:44 pilot_heartbeat.json
[2025-07-25 12:44:53] -rw-------. 1 boinc boinc      8408 Jul 25 12:44 heartbeat.json
[2025-07-25 12:44:53] -rw-r--r--. 1 boinc boinc      8192 Jul 25 12:44 boinc_mmap_file
[2025-07-25 12:44:53] -rw-r--r--. 1 boinc boinc        22 Jul 25 12:44 wrapper_checkpoint.txt
[2025-07-25 12:44:53] -rw-------. 1 boinc boinc       823 Jul 25 12:44 pilotlog.txt
[2025-07-25 12:44:53] -rw-------. 1 boinc boinc     77102 Jul 25 12:44 log.45743349._024125.job.log.1
[2025-07-25 12:44:53] -rw-------. 1 boinc boinc       188 Jul 25 12:44 output.list
[2025-07-25 12:44:53] -rw-r--r--. 1 boinc boinc       620 Jul 25 12:44 runtime_log
[2025-07-25 12:44:53] -rw-------. 1 boinc boinc    122880 Jul 25 12:44 result.tar.gz
[2025-07-25 12:44:53] -rw-r--r--. 1 boinc boinc      8485 Jul 25 12:44 runtime_log.err
[2025-07-25 12:44:53] -rw-------. 1 boinc boinc       644 Jul 25 12:44 aNUNDm1xaz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmB1PLDmSrQ7Um.diag
[2025-07-25 12:44:53] -rw-r--r--. 1 boinc boinc     21791 Jul 25 12:44 stderr.txt
[2025-07-25 12:44:53] No HITS result produced
[2025-07-25 12:44:53]  *** Contents of shared directory: ***
[2025-07-25 12:44:53] total 138272
[2025-07-25 12:44:53] -rw-r--r--. 2 boinc boinc 140898728 Jul 25 12:40 ATLAS.root_0
[2025-07-25 12:44:53] -rw-r--r--. 2 boinc boinc     15095 Jul 25 12:40 start_atlas.sh
[2025-07-25 12:44:53] -rw-r--r--. 2 boinc boinc    542891 Jul 25 12:40 input.tar.gz
[2025-07-25 12:44:53] -rw-------. 1 boinc boinc    122880 Jul 25 12:44 result.tar.gz
12:44:54 (1569773): run_atlas exited; CPU time 22.526260
12:44:54 (1569773): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN