Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:39:19 (3098940): wrapper (7.7.26015): starting
12:39:19 (3098940): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 12:39:19] Arguments: --nthreads 12
[2025-07-25 12:39:19] Threads: 12
[2025-07-25 12:39:19] Checking for CVMFS
[2025-07-25 12:39:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 12:39:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 12:39:19] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 12:39:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 12:39:20] 2.11.5.0 196232 34553 223192 148751 3 304 40573546 45568000 11942 130560 0 270832059 99.768 183036471 26228 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-25 12:39:20] CVMFS is ok
[2025-07-25 12:39:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 12:39:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 12:39:20] Further information can be found at the LHC@home message board.
[2025-07-25 12:39:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 12:39:20] Checking for apptainer binary...
[2025-07-25 12:39:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 12:39:20] Running /usr/bin/apptainer --version
[2025-07-25 12:39:20] apptainer version 1.4.1-1.el9
[2025-07-25 12:39:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 12:39:20] wns0092.triumf.lcg
[2025-07-25 12:39:20] apptainer works
[2025-07-25 12:39:20] Set ATHENA_PROC_NUMBER=12
[2025-07-25 12:39:20] Set ATHENA_CORE_NUMBER=12
[2025-07-25 12:39:20] Starting ATLAS job with PandaID=6745058437
[2025-07-25 12:39:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 12:43:41]  *** The last 200 lines of the pilot log: ***
[2025-07-25 12:43:41] 2025-07-25 19:43:07,982 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 12:43:41] 2025-07-25 19:43:07,982 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 12:43:41] 2025-07-25 19:43:08,027 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 12:43:41] 2025-07-25 19:43:08,027 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | WARNING  | wrong length of table data, x=[1753472428.0], y=[873.0] (must be same and length>=4)
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | could have reported an average CPU frequency of 2652 MHz (4 samples)
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | ..............................
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . Timing measurements:
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . get job = 0 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . initial setup = 3 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . payload setup = 13 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . stage-in = 0 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . payload execution = 43 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | . stage-out = 0 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | . log creation = 0 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | ..............................
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745058437/pilotlog.txt
[2025-07-25 12:43:41] 2025-07-25 19:43:08,147 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-25 12:43:41] - Log from pilotlog.txt -
[2025-07-25 12:43:41] 2025-07-25 19:43:07,982 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6745058437/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 12:43:41] 2025-07-25 19:43:07,982 | INFO     | extracted standard info from prmon json
[2025-07-25 12:43:41] 2025-07-25 19:43:07,982 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 12:43:41] 2025-07-25 19:43:07,982 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 12:43:41] 2025-07-25 19:43:08,027 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 12:43:41] 2025-07-25 19:43:08,027 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | WARNING  | wrong length of table data, x=[1753472428.0], y=[873.0] (must be same and length>=4)
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | could have reported an average CPU frequency of 2652 MHz (4 samples)
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | ..............................
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . Timing measurements:
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . get job = 0 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . initial setup = 3 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . payload setup = 13 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . stage-in = 0 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . payload execution = 43 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | . stage-out = 0 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | . log creation = 0 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | ..............................
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745058437/pilotlog.txt
[2025-07-25 12:43:41] 2025-07-25 19:43:08,148 | WARNING  | 
[2025-07-25 12:43:41] [begin log extracts]
[2025-07-25 12:43:41] - Log from pilotlog.txt -
[2025-07-25 12:43:41] 2025-07-25 19:43:07,982 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6745058437/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 12:43:41] 2025-07-25 19:43:07,982 | INFO     | extracted standard info from prmon json
[2025-07-25 12:43:41] 2025-07-25 19:43:07,982 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 12:43:41] 2025-07-25 19:43:07,982 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 12:43:41] 2025-07-25 19:43:08,027 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 12:43:41] 2025-07-25 19:43:08,027 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | WARNING  | wrong length of table data, x=[1753472428.0], y=[873.0] (must be same and length>=4)
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | could have reported an average CPU frequency of 2652 MHz (4 samples)
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | ..............................
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . Timing measurements:
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . get job = 0 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . initial setup = 3 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . payload setup = 13 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . stage-in = 0 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,028 | INFO     | . payload execution = 43 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | . stage-out = 0 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | . log creation = 0 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | ..............................
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 12:43:41] 2025-07-25 19:43:08,029 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745058437/pilotlog.txt
[2025-07-25 12:43:41] [end log extracts]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,148 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-25 12:43:41] 2025-07-25 19:43:08,149 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-25 12:43:41] 2025-07-25 19:43:08,211 | INFO     | 
[2025-07-25 12:43:41] 2025-07-25 19:43:08,211 | INFO     | job summary report
[2025-07-25 12:43:41] 2025-07-25 19:43:08,211 | INFO     | --------------------------------------------------
[2025-07-25 12:43:41] 2025-07-25 19:43:08,211 | INFO     | PanDA job id: 6745058437
[2025-07-25 12:43:41] 2025-07-25 19:43:08,211 | INFO     | task id: 45743349
[2025-07-25 12:43:41] 2025-07-25 19:43:08,211 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-25 12:40:51,269 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-25 12:43:41] 2025-07-25 19:43:08,211 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 12:43:41] 2025-07-25 19:43:08,211 | INFO     | pilot state: failed 
[2025-07-25 12:43:41] 2025-07-25 19:43:08,211 | INFO     | transexitcode: 65
[2025-07-25 12:43:41] 2025-07-25 19:43:08,211 | INFO     | exeerrorcode: 65
[2025-07-25 12:43:41] 2025-07-25 19:43:08,211 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-25 12:43:41] 2025-07-25 19:43:08,211 | INFO     | exitcode: 65
[2025-07-25 12:43:41] 2025-07-25 19:43:08,212 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-25 12:43:41] 2025-07-25 19:43:08,212 | INFO     | cpuconsumptiontime: 16 s
[2025-07-25 12:43:41] 2025-07-25 19:43:08,212 | INFO     | nevents: 0
[2025-07-25 12:43:41] 2025-07-25 19:43:08,212 | INFO     | neventsw: 0
[2025-07-25 12:43:41] 2025-07-25 19:43:08,212 | INFO     | pid: 3116282
[2025-07-25 12:43:41] 2025-07-25 19:43:08,212 | INFO     | pgrp: 3116282
[2025-07-25 12:43:41] 2025-07-25 19:43:08,212 | INFO     | corecount: 12
[2025-07-25 12:43:41] 2025-07-25 19:43:08,212 | INFO     | event service: False
[2025-07-25 12:43:41] 2025-07-25 19:43:08,212 | INFO     | sizes: {0: 2397470, 9: 2397732, 11: 2397760, 61: 2421106, 62: 2425398, 64: 2425426, 189: 2425748}
[2025-07-25 12:43:41] 2025-07-25 19:43:08,212 | INFO     | --------------------------------------------------
[2025-07-25 12:43:41] 2025-07-25 19:43:08,212 | INFO     | 
[2025-07-25 12:43:41] 2025-07-25 19:43:08,212 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-25 12:43:41] 2025-07-25 19:43:08,230 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,230 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,231 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 12:43:41] 2025-07-25 19:43:08,232 | INFO     | job 6745058437 has completed (purged errors)
[2025-07-25 12:43:41] 2025-07-25 19:43:08,232 | INFO     | overall cleanup function is called
[2025-07-25 12:43:41] 2025-07-25 19:43:09,238 | INFO     | --- collectZombieJob: --- 10, [3116282]
[2025-07-25 12:43:41] 2025-07-25 19:43:09,238 | INFO     | zombie collector waiting for pid 3116282
[2025-07-25 12:43:41] 2025-07-25 19:43:09,238 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 12:43:41] 2025-07-25 19:43:09,238 | INFO     | collected zombie processes
[2025-07-25 12:43:41] 2025-07-25 19:43:09,238 | INFO     | will attempt to kill all subprocesses of pid=3116282
[2025-07-25 12:43:41] 2025-07-25 19:43:09,408 | INFO     | process IDs to be killed: [3116282] (in reverse order)
[2025-07-25 12:43:41] 2025-07-25 19:43:09,470 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 12:43:41] 2025-07-25 19:43:09,470 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 12:43:41] 2025-07-25 19:43:09,480 | INFO     | did not find any defunct processes belonging to 3116282
[2025-07-25 12:43:41] 2025-07-25 19:43:09,486 | INFO     | did not find any defunct processes belonging to 3116282
[2025-07-25 12:43:41] 2025-07-25 19:43:09,486 | INFO     | ready for new job
[2025-07-25 12:43:41] 2025-07-25 19:43:09,487 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 12:43:41] 2025-07-25 19:43:09,488 | INFO     | ***************************************
[2025-07-25 12:43:41] 2025-07-25 19:43:09,488 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 12:43:41] 2025-07-25 19:43:09,488 | INFO     | ***************************************
[2025-07-25 12:43:41] 2025-07-25 19:43:09,488 | INFO     | 
[2025-07-25 12:43:41] 2025-07-25 19:43:09,490 | INFO     | architecture information:
[2025-07-25 12:43:41] 2025-07-25 19:43:09,490 | INFO     | executing command: cat /etc/os-release
[2025-07-25 12:43:41] 2025-07-25 19:43:09,500 | INFO     | cat /etc/os-release:
[2025-07-25 12:43:41] NAME="CentOS Linux"
[2025-07-25 12:43:41] VERSION="7 (Core)"
[2025-07-25 12:43:41] ID="centos"
[2025-07-25 12:43:41] ID_LIKE="rhel fedora"
[2025-07-25 12:43:41] VERSION_ID="7"
[2025-07-25 12:43:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 12:43:41] ANSI_COLOR="0;31"
[2025-07-25 12:43:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 12:43:41] HOME_URL="https://www.centos.org/"
[2025-07-25 12:43:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 12:43:41] 
[2025-07-25 12:43:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 12:43:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 12:43:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 12:43:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 12:43:41] 
[2025-07-25 12:43:41] 2025-07-25 19:43:09,500 | INFO     | ***************************************
[2025-07-25 12:43:41] 2025-07-25 19:43:10,003 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-25 12:43:41] 2025-07-25 19:43:10,019 | INFO     | sufficient remaining disk space (1800176402432 B)
[2025-07-25 12:43:41] 2025-07-25 19:43:10,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 12:43:41] 2025-07-25 19:43:10,019 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 12:43:41] 2025-07-25 19:43:10,020 | INFO     | update_server=False
[2025-07-25 12:43:41] 2025-07-25 19:43:10,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 12:43:41] 2025-07-25 19:43:10,020 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 12:43:41] 2025-07-25 19:43:10,021 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 12:43:41] 2025-07-25 19:43:10,237 | INFO     | all payload control threads have been joined
[2025-07-25 12:43:41] 2025-07-25 19:43:10,585 | INFO     | all data control threads have been joined
[2025-07-25 12:43:41] 2025-07-25 19:43:10,668 | INFO     | all job control threads have been joined
[2025-07-25 12:43:41] 2025-07-25 19:43:10,700 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 12:43:41] 2025-07-25 19:43:10,700 | INFO     | aborting loop
[2025-07-25 12:43:41] 2025-07-25 19:43:10,783 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 12:43:41] 2025-07-25 19:43:11,026 | INFO     | [job] retrieve thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:11,027 | INFO     | [job] queue monitor thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:11,087 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:11,243 | INFO     | [payload] control thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:11,312 | INFO     | [payload] failed_post thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:11,534 | INFO     | [data] copytool_in thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:11,591 | INFO     | [data] control thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:11,674 | INFO     | [job] control thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:11,690 | INFO     | [job] validate thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:11,706 | INFO     | [job] job monitor thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:11,797 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:11,863 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:11,937 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:12,027 | INFO     | [data] copytool_out thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:12,409 | INFO     | [payload] validate_post thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:14,790 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 12:43:41] 2025-07-25 19:43:15,673 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140230921996096)>', '<ExcThread(monitor, started 140230388598528)>']
[2025-07-25 12:43:41] 2025-07-25 19:43:20,699 | INFO     | all workflow threads have been joined
[2025-07-25 12:43:41] 2025-07-25 19:43:20,699 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 12:43:41] 2025-07-25 19:43:20,699 | INFO     | traces error code: 0
[2025-07-25 12:43:41] 2025-07-25 19:43:20,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 12:43:41] 2025-07-25 19:43:40,424 | INFO     | PID=3104583 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 12:43:41] 2025-07-25 19:43:40,424 | INFO     | .. there are 21 such processes running
[2025-07-25 12:43:41] 2025-07-25 19:43:40,425 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 12:43:41] 2025-07-25 19:43:40,425 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 12:43:41] 2025-07-25 19:43:40,425 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 12:43:41] 2025-07-25 19:43:40,425 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 12:43:41] 2025-07-25 19:43:40,425 | INFO     | [monitor] control thread has ended
[2025-07-25 12:43:41] 2025-07-25 19:43:40,553 [wrapper] ==== pilot stdout END ====
[2025-07-25 12:43:41] 2025-07-25 19:43:40,556 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 12:43:41] 2025-07-25 19:43:40,558 [wrapper] pilotpid: 3104583
[2025-07-25 12:43:41] 2025-07-25 19:43:40,560 [wrapper] Pilot exit status: 0
[2025-07-25 12:43:41] 2025-07-25 19:43:40,609 [wrapper] pandaids: 6745058437
[2025-07-25 12:43:41] 2025-07-25 19:43:40,655 [wrapper] cleanup supervisor_pilot 3104599 3104584
[2025-07-25 12:43:41] 2025-07-25 19:43:40,657 [wrapper] Test setup, not cleaning
[2025-07-25 12:43:41] 2025-07-25 19:43:40,659 [wrapper] apfmon messages muted
[2025-07-25 12:43:41] 2025-07-25 19:43:40,661 [wrapper] ==== wrapper stdout END ====
[2025-07-25 12:43:41] 2025-07-25 19:43:40,662 [wrapper] ==== wrapper stderr END ====
[2025-07-25 12:43:41]  *** Error codes and diagnostics ***
[2025-07-25 12:43:41]     "exeErrorCode": 65,
[2025-07-25 12:43:41]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-25 12:43:41]     "pilotErrorCode": 1305,
[2025-07-25 12:43:41]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-25 12:43:41]  *** Listing of results directory ***
[2025-07-25 12:43:41] total 148936
[2025-07-25 12:43:41] -rw-r--r--. 1 boinc boinc    530466 Jul 25 09:23 pilot3.tar.gz
[2025-07-25 12:43:41] -rw-r--r--. 1 boinc boinc      5112 Jul 25 09:38 queuedata.json
[2025-07-25 12:43:41] -rwx------. 1 boinc boinc     36292 Jul 25 09:39 runpilot2-wrapper.sh
[2025-07-25 12:43:41] -rw-r--r--. 1 boinc boinc       100 Jul 25 12:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 12:43:41] -rwxr-xr-x. 1 boinc boinc      7986 Jul 25 12:39 run_atlas
[2025-07-25 12:43:41] -rw-r--r--. 1 boinc boinc       105 Jul 25 12:39 job.xml
[2025-07-25 12:43:41] -rw-r--r--. 1 boinc boinc      6596 Jul 25 12:39 init_data.xml
[2025-07-25 12:43:41] -rw-r--r--. 2 boinc boinc 148429063 Jul 25 12:39 EVNT.45743347._001352.pool.root.1
[2025-07-25 12:43:41] -rw-r--r--. 2 boinc boinc     15095 Jul 25 12:39 start_atlas.sh
[2025-07-25 12:43:41] drwxrwx--x. 2 boinc boinc      4096 Jul 25 12:39 shared
[2025-07-25 12:43:41] -rw-r--r--. 2 boinc boinc    542895 Jul 25 12:39 input.tar.gz
[2025-07-25 12:43:41] -rw-r--r--. 1 boinc boinc         0 Jul 25 12:39 boinc_lockfile
[2025-07-25 12:43:41] -rw-r--r--. 1 boinc boinc      2562 Jul 25 12:39 pandaJob.out
[2025-07-25 12:43:41] -rw-------. 1 boinc boinc    979993 Jul 25 12:39 agis_schedconf.cvmfs.json
[2025-07-25 12:43:41] -rw-------. 1 boinc boinc   1593052 Jul 25 12:39 agis_ddmendpoints.agis.ALL.json
[2025-07-25 12:43:41] drwx------. 4 boinc boinc      4096 Jul 25 12:39 pilot3
[2025-07-25 12:43:41] -rw-r--r--. 1 boinc boinc       522 Jul 25 12:40 boinc_task_state.xml
[2025-07-25 12:43:41] -rw-------. 1 boinc boinc       985 Jul 25 12:40 memory_monitor_summary.json
[2025-07-25 12:43:41] -rw-------. 1 boinc boinc     21110 Jul 25 12:41 log.45743349._023882.job.log.tgz.1
[2025-07-25 12:43:41] -rw-------. 1 boinc boinc        95 Jul 25 12:42 pilot_heartbeat.json
[2025-07-25 12:43:41] -rw-------. 1 boinc boinc      8432 Jul 25 12:43 heartbeat.json
[2025-07-25 12:43:41] -rw-r--r--. 1 boinc boinc        22 Jul 25 12:43 wrapper_checkpoint.txt
[2025-07-25 12:43:41] -rw-r--r--. 1 boinc boinc      8192 Jul 25 12:43 boinc_mmap_file
[2025-07-25 12:43:41] -rw-------. 1 boinc boinc       823 Jul 25 12:43 pilotlog.txt
[2025-07-25 12:43:41] -rw-------. 1 boinc boinc     78791 Jul 25 12:43 log.45743349._023882.job.log.1
[2025-07-25 12:43:41] -rw-------. 1 boinc boinc       188 Jul 25 12:43 output.list
[2025-07-25 12:43:41] -rw-r--r--. 1 boinc boinc       620 Jul 25 12:43 runtime_log
[2025-07-25 12:43:41] -rw-------. 1 boinc boinc    122880 Jul 25 12:43 result.tar.gz
[2025-07-25 12:43:41] -rw-r--r--. 1 boinc boinc      8485 Jul 25 12:43 runtime_log.err
[2025-07-25 12:43:41] -rw-------. 1 boinc boinc       644 Jul 25 12:43 irDLDmycaz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmMFzKDmkhaU2m.diag
[2025-07-25 12:43:41] -rw-r--r--. 1 boinc boinc     21790 Jul 25 12:43 stderr.txt
[2025-07-25 12:43:41] No HITS result produced
[2025-07-25 12:43:41]  *** Contents of shared directory: ***
[2025-07-25 12:43:41] total 145624
[2025-07-25 12:43:41] -rw-r--r--. 2 boinc boinc 148429063 Jul 25 12:39 ATLAS.root_0
[2025-07-25 12:43:41] -rw-r--r--. 2 boinc boinc     15095 Jul 25 12:39 start_atlas.sh
[2025-07-25 12:43:41] -rw-r--r--. 2 boinc boinc    542895 Jul 25 12:39 input.tar.gz
[2025-07-25 12:43:41] -rw-------. 1 boinc boinc    122880 Jul 25 12:43 result.tar.gz
12:43:42 (3098940): run_atlas exited; CPU time 23.306348
12:43:42 (3098940): called boinc_finish(0)

</stderr_txt>
]]>

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