Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:22:20 (1743363): wrapper (7.7.26015): starting
11:22:20 (1743363): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 11:22:20] Arguments: --nthreads 12
[2025-07-25 11:22:20] Threads: 12
[2025-07-25 11:22:20] Checking for CVMFS
[2025-07-25 11:22:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 11:22:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 11:22:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 11:22:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 11:22:21] 2.11.5.0 11019 22839 126760 148750 3 27 39596984 45568000 19383 130560 0 154183370 99.692 128549985 19403 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-25 11:22:21] CVMFS is ok
[2025-07-25 11:22:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 11:22:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 11:22:21] Further information can be found at the LHC@home message board.
[2025-07-25 11:22:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 11:22:21] Checking for apptainer binary...
[2025-07-25 11:22:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 11:22:21] Running /usr/bin/apptainer --version
[2025-07-25 11:22:21] apptainer version 1.4.1-1.el9
[2025-07-25 11:22:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 11:22:21] wns0042.triumf.lcg
[2025-07-25 11:22:21] apptainer works
[2025-07-25 11:22:21] Set ATHENA_PROC_NUMBER=12
[2025-07-25 11:22:21] Set ATHENA_CORE_NUMBER=12
[2025-07-25 11:22:21] Starting ATLAS job with PandaID=6745057551
[2025-07-25 11:22:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 11:27:29]  *** The last 200 lines of the pilot log: ***
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | could have reported an average CPU frequency of 2502 MHz (4 samples)
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | ..............................
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . Timing measurements:
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . get job = 0 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . initial setup = 3 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . payload setup = 17 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . stage-in = 0 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . payload execution = 64 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . stage-out = 0 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . log creation = 0 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | ..............................
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745057551/pilotlog.txt
[2025-07-25 11:27:29] 2025-07-25 18:26:54,972 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-25 11:27:29] - Log from pilotlog.txt -
[2025-07-25 11:27:29] 2025-07-25 18:26:54,828 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6745057551/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 11:27:29] 2025-07-25 18:26:54,878 | INFO     | extracted standard info from prmon json
[2025-07-25 11:27:29] 2025-07-25 18:26:54,878 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 11:27:29] 2025-07-25 18:26:54,878 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 11:27:29] 2025-07-25 18:26:54,879 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 11:27:29] 2025-07-25 18:26:54,879 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 11:27:29] 2025-07-25 18:26:54,879 | WARNING  | wrong length of table data, x=[1753467832.0], y=[2444.0] (must be same and length>=4)
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | could have reported an average CPU frequency of 2502 MHz (4 samples)
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | ..............................
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . Timing measurements:
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . get job = 0 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . initial setup = 3 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . payload setup = 17 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . stage-in = 0 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . payload execution = 64 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . stage-out = 0 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . log creation = 0 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | ..............................
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745057551/pilotlog.txt
[2025-07-25 11:27:29] 2025-07-25 18:26:54,972 | WARNING  | 
[2025-07-25 11:27:29] [begin log extracts]
[2025-07-25 11:27:29] - Log from pilotlog.txt -
[2025-07-25 11:27:29] 2025-07-25 18:26:54,828 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6745057551/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 11:27:29] 2025-07-25 18:26:54,878 | INFO     | extracted standard info from prmon json
[2025-07-25 11:27:29] 2025-07-25 18:26:54,878 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 11:27:29] 2025-07-25 18:26:54,878 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 11:27:29] 2025-07-25 18:26:54,879 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 11:27:29] 2025-07-25 18:26:54,879 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 11:27:29] 2025-07-25 18:26:54,879 | WARNING  | wrong length of table data, x=[1753467832.0], y=[2444.0] (must be same and length>=4)
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | could have reported an average CPU frequency of 2502 MHz (4 samples)
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | ..............................
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . Timing measurements:
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . get job = 0 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . initial setup = 3 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . payload setup = 17 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . stage-in = 0 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . payload execution = 64 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . stage-out = 0 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | . log creation = 0 s
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | ..............................
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 11:27:29] 2025-07-25 18:26:54,880 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745057551/pilotlog.txt
[2025-07-25 11:27:29] [end log extracts]
[2025-07-25 11:27:29] 2025-07-25 18:26:54,972 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-25 11:27:29] 2025-07-25 18:26:54,973 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-25 11:27:29] 2025-07-25 18:26:55,603 | INFO     | 
[2025-07-25 11:27:29] 2025-07-25 18:26:55,603 | INFO     | job summary report
[2025-07-25 11:27:29] 2025-07-25 18:26:55,603 | INFO     | --------------------------------------------------
[2025-07-25 11:27:29] 2025-07-25 18:26:55,603 | INFO     | PanDA job id: 6745057551
[2025-07-25 11:27:29] 2025-07-25 18:26:55,603 | INFO     | task id: 45743349
[2025-07-25 11:27:29] 2025-07-25 18:26:55,603 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-25 11:24:33,141 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-25 11:27:29] 2025-07-25 18:26:55,603 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 11:27:29] 2025-07-25 18:26:55,603 | INFO     | pilot state: failed 
[2025-07-25 11:27:29] 2025-07-25 18:26:55,603 | INFO     | transexitcode: 65
[2025-07-25 11:27:29] 2025-07-25 18:26:55,603 | INFO     | exeerrorcode: 65
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | exitcode: 65
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | cpuconsumptiontime: 19 s
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | nevents: 0
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | neventsw: 0
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | pid: 1761828
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | pgrp: 1761828
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | corecount: 12
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | event service: False
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | sizes: {0: 2397297, 1: 2397496, 12: 2397496, 14: 2397786, 23: 2397814, 85: 2421107, 86: 2421211, 87: 2425531, 90: 2425559, 216: 2425725}
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | --------------------------------------------------
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | 
[2025-07-25 11:27:29] 2025-07-25 18:26:55,604 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-25 11:27:29] 2025-07-25 18:26:55,833 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,833 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,834 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 11:27:29] 2025-07-25 18:26:55,835 | INFO     | job 6745057551 has completed (purged errors)
[2025-07-25 11:27:29] 2025-07-25 18:26:55,835 | INFO     | overall cleanup function is called
[2025-07-25 11:27:29] 2025-07-25 18:26:56,786 | INFO     | PID=1750598 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 11:27:29] 2025-07-25 18:26:56,786 | INFO     | .. there are 35 such processes running
[2025-07-25 11:27:29] 2025-07-25 18:26:56,842 | INFO     | --- collectZombieJob: --- 10, [1761828]
[2025-07-25 11:27:29] 2025-07-25 18:26:56,842 | INFO     | zombie collector waiting for pid 1761828
[2025-07-25 11:27:29] 2025-07-25 18:26:56,842 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 11:27:29] 2025-07-25 18:26:56,842 | INFO     | collected zombie processes
[2025-07-25 11:27:29] 2025-07-25 18:26:56,842 | INFO     | will attempt to kill all subprocesses of pid=1761828
[2025-07-25 11:27:29] 2025-07-25 18:26:57,447 | INFO     | process IDs to be killed: [1761828] (in reverse order)
[2025-07-25 11:27:29] 2025-07-25 18:26:57,762 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 11:27:29] 2025-07-25 18:26:57,762 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 11:27:29] 2025-07-25 18:26:57,790 | INFO     | did not find any defunct processes belonging to 1761828
[2025-07-25 11:27:29] 2025-07-25 18:26:57,863 | INFO     | did not find any defunct processes belonging to 1761828
[2025-07-25 11:27:29] 2025-07-25 18:26:57,863 | INFO     | ready for new job
[2025-07-25 11:27:29] 2025-07-25 18:26:57,864 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 11:27:29] 2025-07-25 18:26:57,865 | INFO     | ***************************************
[2025-07-25 11:27:29] 2025-07-25 18:26:57,865 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 11:27:29] 2025-07-25 18:26:57,865 | INFO     | ***************************************
[2025-07-25 11:27:29] 2025-07-25 18:26:57,865 | INFO     | 
[2025-07-25 11:27:29] 2025-07-25 18:26:57,888 | INFO     | architecture information:
[2025-07-25 11:27:29] 2025-07-25 18:26:57,918 | INFO     | executing command: cat /etc/os-release
[2025-07-25 11:27:29] 2025-07-25 18:26:57,968 | INFO     | cat /etc/os-release:
[2025-07-25 11:27:29] NAME="CentOS Linux"
[2025-07-25 11:27:29] VERSION="7 (Core)"
[2025-07-25 11:27:29] ID="centos"
[2025-07-25 11:27:29] ID_LIKE="rhel fedora"
[2025-07-25 11:27:29] VERSION_ID="7"
[2025-07-25 11:27:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 11:27:29] ANSI_COLOR="0;31"
[2025-07-25 11:27:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 11:27:29] HOME_URL="https://www.centos.org/"
[2025-07-25 11:27:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 11:27:29] 
[2025-07-25 11:27:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 11:27:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 11:27:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 11:27:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 11:27:29] 
[2025-07-25 11:27:29] 2025-07-25 18:26:57,968 | INFO     | ***************************************
[2025-07-25 11:27:29] 2025-07-25 18:26:58,486 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-25 11:27:29] 2025-07-25 18:26:58,555 | INFO     | sufficient remaining disk space (1785224757248 B)
[2025-07-25 11:27:29] 2025-07-25 18:26:58,556 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 11:27:29] 2025-07-25 18:26:58,556 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 11:27:29] 2025-07-25 18:26:58,556 | INFO     | update_server=False
[2025-07-25 11:27:29] 2025-07-25 18:26:58,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 11:27:29] 2025-07-25 18:26:58,935 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-25 11:27:29] 2025-07-25 18:26:58,935 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-25 11:27:29] 2025-07-25 18:26:58,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 11:27:29] 2025-07-25 18:26:58,935 | INFO     | will abort loop
[2025-07-25 11:27:29] 2025-07-25 18:26:58,947 | INFO     | all job control threads have been joined
[2025-07-25 11:27:29] 2025-07-25 18:26:59,230 | INFO     | all data control threads have been joined
[2025-07-25 11:27:29] 2025-07-25 18:26:59,230 | INFO     | all payload control threads have been joined
[2025-07-25 11:27:29] 2025-07-25 18:26:59,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 11:27:29] 2025-07-25 18:26:59,561 | INFO     | [job] retrieve thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:26:59,897 | INFO     | [payload] validate_post thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:26:59,936 | INFO     | [job] validate thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:26:59,941 | INFO     | [job] job monitor thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:26:59,955 | INFO     | [job] control thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:27:00,027 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:27:00,027 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:27:00,237 | INFO     | [data] control thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:27:00,237 | INFO     | [payload] control thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:27:00,566 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 11:27:29] 2025-07-25 18:27:00,869 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:27:00,943 | INFO     | [data] copytool_in thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:27:00,978 | INFO     | [payload] failed_post thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:27:00,985 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:27:01,279 | INFO     | [data] copytool_out thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:27:01,572 | INFO     | [job] queue monitor thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:27:01,625 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 11:27:29] 2025-07-25 18:27:05,634 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 11:27:29] 2025-07-25 18:27:06,854 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139640688981824)>', '<ExcThread(monitor, started 139639847380736)>']
[2025-07-25 11:27:29] 2025-07-25 18:27:11,880 | INFO     | all workflow threads have been joined
[2025-07-25 11:27:29] 2025-07-25 18:27:11,880 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 11:27:29] 2025-07-25 18:27:11,880 | INFO     | traces error code: 0
[2025-07-25 11:27:29] 2025-07-25 18:27:11,880 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 11:27:29] 2025-07-25 18:27:27,865 | INFO     | 256s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-25 11:27:29] 2025-07-25 18:27:29,297 | INFO     | PID=1750598 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 11:27:29] 2025-07-25 18:27:29,297 | INFO     | .. there are 35 such processes running
[2025-07-25 11:27:29] 2025-07-25 18:27:29,297 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 11:27:29] 2025-07-25 18:27:29,298 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 11:27:29] 2025-07-25 18:27:29,298 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 11:27:29] 2025-07-25 18:27:29,298 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 11:27:29] 2025-07-25 18:27:29,298 | INFO     | [monitor] control thread has ended
[2025-07-25 11:27:29] 2025-07-25 18:27:29,502 [wrapper] ==== pilot stdout END ====
[2025-07-25 11:27:29] 2025-07-25 18:27:29,505 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 11:27:29] 2025-07-25 18:27:29,506 [wrapper] pilotpid: 1750598
[2025-07-25 11:27:29] 2025-07-25 18:27:29,508 [wrapper] Pilot exit status: 0
[2025-07-25 11:27:29] 2025-07-25 18:27:29,558 [wrapper] pandaids: 6745057551
[2025-07-25 11:27:29] 2025-07-25 18:27:29,631 [wrapper] cleanup supervisor_pilot 1750609 1750599
[2025-07-25 11:27:29] 2025-07-25 18:27:29,654 [wrapper] Test setup, not cleaning
[2025-07-25 11:27:29] 2025-07-25 18:27:29,657 [wrapper] apfmon messages muted
[2025-07-25 11:27:29] 2025-07-25 18:27:29,659 [wrapper] ==== wrapper stdout END ====
[2025-07-25 11:27:29] 2025-07-25 18:27:29,663 [wrapper] ==== wrapper stderr END ====
[2025-07-25 11:27:29]  *** Error codes and diagnostics ***
[2025-07-25 11:27:29]     "exeErrorCode": 65,
[2025-07-25 11:27:29]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-25 11:27:29]     "pilotErrorCode": 1305,
[2025-07-25 11:27:29]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-25 11:27:29]  *** Listing of results directory ***
[2025-07-25 11:27:29] total 147068
[2025-07-25 11:27:29] -rw-r--r--. 1 boinc boinc    530466 Jul 25 08:27 pilot3.tar.gz
[2025-07-25 11:27:29] -rwx------. 1 boinc boinc     36292 Jul 25 08:35 runpilot2-wrapper.sh
[2025-07-25 11:27:29] -rw-r--r--. 1 boinc boinc      5112 Jul 25 08:35 queuedata.json
[2025-07-25 11:27:29] -rw-r--r--. 1 boinc boinc       100 Jul 25 11:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 11:27:29] -rwxr-xr-x. 1 boinc boinc      7986 Jul 25 11:22 run_atlas
[2025-07-25 11:27:29] -rw-r--r--. 1 boinc boinc       105 Jul 25 11:22 job.xml
[2025-07-25 11:27:29] -rw-r--r--. 1 boinc boinc      6596 Jul 25 11:22 init_data.xml
[2025-07-25 11:27:29] -rw-r--r--. 2 boinc boinc 146516485 Jul 25 11:22 EVNT.45743347._001301.pool.root.1
[2025-07-25 11:27:29] -rw-r--r--. 2 boinc boinc     15095 Jul 25 11:22 start_atlas.sh
[2025-07-25 11:27:29] drwxrwx--x. 2 boinc boinc      4096 Jul 25 11:22 shared
[2025-07-25 11:27:29] -rw-r--r--. 2 boinc boinc    542889 Jul 25 11:22 input.tar.gz
[2025-07-25 11:27:29] -rw-r--r--. 1 boinc boinc         0 Jul 25 11:22 boinc_lockfile
[2025-07-25 11:27:29] -rw-r--r--. 1 boinc boinc      2561 Jul 25 11:22 pandaJob.out
[2025-07-25 11:27:29] -rw-------. 1 boinc boinc    979993 Jul 25 11:22 agis_schedconf.cvmfs.json
[2025-07-25 11:27:29] -rw-------. 1 boinc boinc   1593052 Jul 25 11:22 agis_ddmendpoints.agis.ALL.json
[2025-07-25 11:27:29] drwx------. 4 boinc boinc      4096 Jul 25 11:22 pilot3
[2025-07-25 11:27:29] -rw-r--r--. 1 boinc boinc       525 Jul 25 11:24 boinc_task_state.xml
[2025-07-25 11:27:29] -rw-------. 1 boinc boinc       961 Jul 25 11:24 memory_monitor_summary.json
[2025-07-25 11:27:29] -rw-------. 1 boinc boinc     21578 Jul 25 11:24 log.45743349._023095.job.log.tgz.1
[2025-07-25 11:27:29] -rw-------. 1 boinc boinc        95 Jul 25 11:26 pilot_heartbeat.json
[2025-07-25 11:27:29] -rw-------. 1 boinc boinc      8386 Jul 25 11:26 heartbeat.json
[2025-07-25 11:27:29] -rw-r--r--. 1 boinc boinc        23 Jul 25 11:27 wrapper_checkpoint.txt
[2025-07-25 11:27:29] -rw-r--r--. 1 boinc boinc      8192 Jul 25 11:27 boinc_mmap_file
[2025-07-25 11:27:29] -rw-------. 1 boinc boinc       937 Jul 25 11:27 pilotlog.txt
[2025-07-25 11:27:29] -rw-------. 1 boinc boinc     81057 Jul 25 11:27 log.45743349._023095.job.log.1
[2025-07-25 11:27:29] -rw-------. 1 boinc boinc       188 Jul 25 11:27 output.list
[2025-07-25 11:27:29] -rw-r--r--. 1 boinc boinc       620 Jul 25 11:27 runtime_log
[2025-07-25 11:27:29] -rw-------. 1 boinc boinc    122880 Jul 25 11:27 result.tar.gz
[2025-07-25 11:27:29] -rw-r--r--. 1 boinc boinc      8485 Jul 25 11:27 runtime_log.err
[2025-07-25 11:27:29] -rw-------. 1 boinc boinc       647 Jul 25 11:27 5RcMDmkdZz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxqPLDmbbVqRm.diag
[2025-07-25 11:27:29] -rw-r--r--. 1 boinc boinc     21963 Jul 25 11:27 stderr.txt
[2025-07-25 11:27:29] No HITS result produced
[2025-07-25 11:27:29]  *** Contents of shared directory: ***
[2025-07-25 11:27:29] total 143756
[2025-07-25 11:27:29] -rw-r--r--. 2 boinc boinc 146516485 Jul 25 11:22 ATLAS.root_0
[2025-07-25 11:27:29] -rw-r--r--. 2 boinc boinc     15095 Jul 25 11:22 start_atlas.sh
[2025-07-25 11:27:29] -rw-r--r--. 2 boinc boinc    542889 Jul 25 11:22 input.tar.gz
[2025-07-25 11:27:29] -rw-------. 1 boinc boinc    122880 Jul 25 11:27 result.tar.gz
11:27:31 (1743363): run_atlas exited; CPU time 26.955246
11:27:31 (1743363): called boinc_finish(0)

</stderr_txt>
]]>

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