Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-25 14:21:50 (13044): Detected: vboxwrapper 26206
2025-07-25 14:21:50 (13044): Detected: BOINC client v7.16.20
2025-07-25 14:21:55 (13044): Detected: VirtualBox VboxManage Interface (Version: 6.1.32)
2025-07-25 14:21:55 (13044): Successfully copied 'init_data.xml' to the shared directory.
2025-07-25 14:21:56 (13044): Create VM. (boinc_9dce6908958bd5ce, slot#1)
2025-07-25 14:21:56 (13044): Setting Memory Size for VM. (4400MB)
2025-07-25 14:21:57 (13044): Setting CPU Count for VM. (4)
2025-07-25 14:21:57 (13044): Setting Chipset Options for VM.
2025-07-25 14:21:57 (13044): Setting Graphics Controller Options for VM.
2025-07-25 14:21:58 (13044): Setting Boot Options for VM.
2025-07-25 14:21:58 (13044): Setting Network Configuration for NAT.
2025-07-25 14:21:58 (13044): Enabling VM Network Access.
2025-07-25 14:21:58 (13044): Disabling USB Support for VM.
2025-07-25 14:21:59 (13044): Disabling COM Port Support for VM.
2025-07-25 14:21:59 (13044): Disabling LPT Port Support for VM.
2025-07-25 14:21:59 (13044): Disabling Audio Support for VM.
2025-07-25 14:22:00 (13044): Disabling Clipboard Support for VM.
2025-07-25 14:22:00 (13044): Disabling Drag and Drop Support for VM.
2025-07-25 14:22:00 (13044): Adding storage controller(s) to VM.
2025-07-25 14:22:01 (13044): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-25 14:22:06 (13044): Adding VirtualBox Guest Additions to VM.
2025-07-25 14:22:08 (13044): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-25 14:22:09 (13044): forwarding host port 51525 to guest port 80
2025-07-25 14:22:11 (13044): Enabling remote desktop for VM.
2025-07-25 14:22:12 (13044): Required extension pack not installed, remote desktop not enabled.
2025-07-25 14:22:12 (13044): Enabling shared directory for VM.
2025-07-25 14:22:14 (13044): Starting VM using VBoxManage interface. (boinc_9dce6908958bd5ce, slot#1)
2025-07-25 14:22:22 (13044): Successfully started VM. (PID = '8912')
2025-07-25 14:22:22 (13044): Reporting VM Process ID to BOINC.
2025-07-25 14:22:22 (13044): Guest Log: BIOS: VirtualBox 6.1.32
2025-07-25 14:22:22 (13044): Guest Log: CPUID EDX: 0x178bfbff
2025-07-25 14:22:22 (13044): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-25 14:22:22 (13044): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-25 14:22:22 (13044): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-25 14:22:22 (13044): Detected: Web Application Enabled (http://localhost:51525)
2025-07-25 14:22:22 (13044): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-25 14:22:22 (13044): Guest Log: BIOS: Booting from Hard Disk...
2025-07-25 14:22:22 (13044): Preference change detected
2025-07-25 14:22:22 (13044): Setting CPU throttle for VM. (50%)
2025-07-25 14:22:24 (13044): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-25 14:23:08 (13044): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-25 14:23:08 (13044): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-25 14:23:08 (13044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-25 14:23:20 (13044): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-25 14:23:20 (13044): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-25 14:23:38 (13044): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-25 14:23:38 (13044): Guest Log: 00:00:00.000305 main     Log opened 2025-07-25T14:23:36.428588000Z
2025-07-25 14:23:38 (13044): Guest Log: 00:00:00.000456 main     OS Product: Linux
2025-07-25 14:23:38 (13044): Guest Log: 00:00:00.000514 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-25 14:23:38 (13044): Guest Log: 00:00:00.000563 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-25 14:23:38 (13044): Guest Log: 00:00:00.000613 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-25 14:23:38 (13044): Guest Log: 00:00:00.000615 main     Process ID: 1270
2025-07-25 14:23:38 (13044): Guest Log: 00:00:00.000616 main     Package type: LINUX_64BITS_GENERIC
2025-07-25 14:23:38 (13044): Guest Log: 00:00:00.002834 main     5.2.32 r132073 started. Verbose level = 0
2025-07-25 14:23:38 (13044): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-25 14:23:38 (13044): Guest Log: [INFO] Mounting shared directory
2025-07-25 14:23:38 (13044): Guest Log: [INFO] Checking for init_data.xml
2025-07-25 14:23:48 (13044): Guest Log: 00:00:10.007954 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 154 120 000ns (GuestNow=1 753 467 827 589 160 000 ns GuestLast=1 753 453 416 435 040 000 ns fSetTimeLastLoop=true )
2025-07-25 14:25:19 (13044): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-25 14:25:19 (13044): Guest Log: [INFO] Detected branch: prod
2025-07-25 14:25:21 (13044): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-25 14:25:21 (13044): Guest Log: Copying input files
2025-07-25 14:25:24 (13044): Guest Log: Copied input files into RunAtlas.
2025-07-25 14:25:24 (13044): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-25 14:25:24 (13044): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-25 14:25:24 (13044): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-25 14:25:24 (13044): Guest Log: Further information can be found at the LHC@home message board.
2025-07-25 14:27:17 (13044): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-25 14:27:21 (13044): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-25 14:27:21 (13044): Guest Log: 2.6.3.0 1587 2 30156 148750 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-25 14:27:23 (13044): Guest Log: copied the webapp to /var/www
2025-07-25 14:27:23 (13044): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-25 14:27:23 (13044): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-25 14:27:25 (13044): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-25 14:27:25 (13044): Guest Log:  *** Starting ATLAS job. (PandaID=6745020533 taskID=45743349) ***
2025-07-25 16:02:24 (13044): Status Report: Elapsed Time: '6000.501001'
2025-07-25 16:02:24 (13044): Status Report: CPU Time: '11457.602646'
2025-07-25 17:42:26 (13044): Status Report: Elapsed Time: '12000.501001'
2025-07-25 17:42:26 (13044): Status Report: CPU Time: '25847.961691'
2025-07-25 19:22:28 (13044): Status Report: Elapsed Time: '18000.501001'
2025-07-25 19:22:28 (13044): Status Report: CPU Time: '40240.286349'
2025-07-25 21:02:29 (13044): Status Report: Elapsed Time: '24000.501001'
2025-07-25 21:02:29 (13044): Status Report: CPU Time: '54628.040177'
2025-07-25 22:42:31 (13044): Status Report: Elapsed Time: '30000.501001'
2025-07-25 22:42:31 (13044): Status Report: CPU Time: '69017.572417'
2025-07-26 00:22:33 (13044): Status Report: Elapsed Time: '36000.501001'
2025-07-26 00:22:33 (13044): Status Report: CPU Time: '83406.231052'
2025-07-26 02:02:34 (13044): Status Report: Elapsed Time: '42000.501001'
2025-07-26 02:02:34 (13044): Status Report: CPU Time: '97800.100120'
2025-07-26 03:42:36 (13044): Status Report: Elapsed Time: '48000.501001'
2025-07-26 03:42:36 (13044): Status Report: CPU Time: '112186.839942'
2025-07-26 04:23:25 (13044): Guest Log:  *** Job finished ***
2025-07-26 04:23:25 (13044): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:22:58,507 | INFO     | traces error code: 0
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:22:58,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:18,325 | INFO     | PID=6009 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:18,326 | INFO     | found 0 job(s) in 20 queues
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:18,326 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:18,327 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:18,327 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:18,327 | CRITICAL | thread 'MainThread' is not alive
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:18,327 | INFO     | [monitor] control thread has ended
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:18,560 [wrapper] ==== pilot stdout END ====
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:18,570 [wrapper] ==== wrapper stdout RESUME ====
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:18,578 [wrapper] pilotpid: 6009
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:18,587 [wrapper] Pilot exit status: 0
2025-07-26 04:23:25 (13044): Guest Log: ./runpilot2-wrapper.sh: line 1018: /usr/bin/xargs: Input/output error
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:21,308 [wrapper] pandaids: 
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:21,366 [wrapper] cleanup supervisor_pilot 19801 6010
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:21,375 [wrapper] Test setup, not cleaning
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:21,384 [wrapper] apfmon messages muted
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:21,394 [wrapper] ==== wrapper stdout END ====
2025-07-26 04:23:25 (13044): Guest Log: 2025-07-26 08:23:21,459 [wrapper] ==== wrapper stderr END ====
2025-07-26 04:23:25 (13044): Guest Log:  *** Error codes and diagnostics ***
2025-07-26 04:23:25 (13044): Guest Log:     "exeErrorCode": 68,
2025-07-26 04:23:25 (13044): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc::::ExcNoDictForClass: Can't find dictionary information for class: EventStreamInfo_p1\"\"",
2025-07-26 04:23:25 (13044): Guest Log:     "pilotErrorCode": 1305,
2025-07-26 04:23:25 (13044): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc:",
2025-07-26 04:23:25 (13044): Guest Log:  *** Listing of results directory ***
2025-07-26 04:23:25 (13044): Guest Log: total 8908
2025-07-26 04:23:25 (13044): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 25 11:59 pilot3.tar.gz
2025-07-26 04:23:25 (13044): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 25 12:13 queuedata.json
2025-07-26 04:23:25 (13044): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 25 12:14 runpilot2-wrapper.sh
2025-07-26 04:23:25 (13044): Guest Log: -rwxr-xr-x. 1 atlas atlas    6050 Jul 25 18:25 init_data.xml
2025-07-26 04:23:25 (13044): Guest Log: -rwxr-xr-x. 1 atlas atlas  542896 Jul 25 18:25 input.tar.gz
2025-07-26 04:23:25 (13044): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 25 18:25 start_atlas.sh
2025-07-26 04:23:25 (13044): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 25 18:25 EVNT.45743347._001205.pool.root.1 -> /data/./ATLAS.root_0
2025-07-26 04:23:25 (13044): Guest Log: -rw-r--r--. 1 atlas atlas    2562 Jul 25 18:27 pandaJob.out
2025-07-26 04:23:25 (13044): Guest Log: -rw-------. 1 atlas atlas  979993 Jul 25 18:32 agis_schedconf.cvmfs.json
2025-07-26 04:23:25 (13044): Guest Log: drwx------. 4 atlas atlas    4096 Jul 25 18:32 pilot3
2025-07-26 04:23:25 (13044): Guest Log: -rw-------. 1 atlas atlas    1036 Jul 26 08:19 memory_monitor_summary.json
2025-07-26 04:23:25 (13044): Guest Log: -rw-------. 1 atlas atlas  524083 Jul 26 08:20 log.45743349._020965.job.log.tgz.1
2025-07-26 04:23:25 (13044): Guest Log: -rw-------. 1 atlas atlas       0 Jul 26 08:20 agis_ddmendpoints.agis.ALL.json
2025-07-26 04:23:25 (13044): Guest Log: -rw-------. 1 atlas atlas       0 Jul 26 08:20 cric_ddmendpoints.json
2025-07-26 04:23:25 (13044): Guest Log: -rw-------. 1 atlas atlas      95 Jul 26 08:22 pilot_heartbeat.json
2025-07-26 04:23:25 (13044): Guest Log: -rw-------. 1 atlas atlas   10741 Jul 26 08:22 heartbeat.json
2025-07-26 04:23:25 (13044): Guest Log: -rw-------. 1 atlas atlas     814 Jul 26 08:23 pilotlog.txt
2025-07-26 04:23:25 (13044): Guest Log: -rw-------. 1 atlas atlas 2929379 Jul 26 08:23 log.45743349._020965.job.log.1
2025-07-26 04:23:25 (13044): Guest Log: -rw-------. 1 atlas atlas     188 Jul 26 08:23 output.list
2025-07-26 04:23:25 (13044): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 26 08:23 runtime_log
2025-07-26 04:23:25 (13044): Guest Log: -rw-------. 1 atlas atlas 3471360 Jul 26 08:23 result.tar.gz
2025-07-26 04:23:25 (13044): Guest Log: -rw-------. 1 atlas atlas     665 Jul 26 08:23 ZucMDmWUWz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvWPLDmllvVXm.diag
2025-07-26 04:23:25 (13044): Guest Log: -rw-r--r--. 1 atlas atlas    8457 Jul 26 08:23 runtime_log.err
2025-07-26 04:23:25 (13044): Guest Log: Looking for outputfile HITS.45743349._020965.pool.root.1
2025-07-26 04:23:25 (13044): Guest Log: No HITS file was produced
2025-07-26 04:23:25 (13044): Guest Log: Successfully finished the ATLAS job!
2025-07-26 04:23:25 (13044): Guest Log: Copying the results back to the shared directory!
2025-07-26 04:23:25 (13044): Guest Log:  *** Contents of shared directory: ***
2025-07-26 04:23:25 (13044): Guest Log: total 144268
2025-07-26 04:23:25 (13044): Guest Log: -rwxrwxrwx. 1 root root 143687665 Jul 25 18:21 ATLAS.root_0
2025-07-26 04:23:25 (13044): Guest Log: -rwxrwxrwx. 1 root root      6050 Jul 25 18:21 init_data.xml
2025-07-26 04:23:25 (13044): Guest Log: -rwxrwxrwx. 1 root root    542896 Jul 25 18:21 input.tar.gz
2025-07-26 04:23:25 (13044): Guest Log: -rwxrwxrwx. 1 root root   3471360 Jul 26 08:23 result.tar.gz
2025-07-26 04:23:25 (13044): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 25 18:21 start_atlas.sh
2025-07-26 04:23:25 (13044): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-26 04:23:25 (13044): VM Completion File Detected.
2025-07-26 04:23:25 (13044): Powering off VM.
2025-07-26 04:23:27 (13044): Successfully stopped VM.
2025-07-26 04:23:27 (13044): Deregistering VM. (boinc_9dce6908958bd5ce, slot#1)
2025-07-26 04:23:28 (13044): Removing network bandwidth throttle group from VM.
2025-07-26 04:23:29 (13044): Removing VM from VirtualBox.
04:23:35 (13044): called boinc_finish(0)

</stderr_txt>
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