Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-25 22:35:58 (20508): Detected: vboxwrapper 26206
2025-07-25 22:35:58 (20508): Detected: BOINC client v8.0.4
2025-07-25 22:35:58 (20508): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-07-25 22:35:58 (20508): Successfully copied 'init_data.xml' to the shared directory.
2025-07-25 22:35:59 (20508): Create VM. (boinc_44ee8f9abda10094, slot#3)
2025-07-25 22:35:59 (20508): Setting Memory Size for VM. (4800MB)
2025-07-25 22:36:00 (20508): Setting CPU Count for VM. (8)
2025-07-25 22:36:00 (20508): Setting Chipset Options for VM.
2025-07-25 22:36:00 (20508): Setting Graphics Controller Options for VM.
2025-07-25 22:36:00 (20508): Setting Boot Options for VM.
2025-07-25 22:36:01 (20508): Setting Network Configuration for NAT.
2025-07-25 22:36:01 (20508): Enabling VM Network Access.
2025-07-25 22:36:01 (20508): Disabling USB Support for VM.
2025-07-25 22:36:02 (20508): Disabling COM Port Support for VM.
2025-07-25 22:36:02 (20508): Disabling LPT Port Support for VM.
2025-07-25 22:36:02 (20508): Disabling Audio Support for VM.
2025-07-25 22:36:02 (20508): Disabling Clipboard Support for VM.
2025-07-25 22:36:03 (20508): Disabling Drag and Drop Support for VM.
2025-07-25 22:36:03 (20508): Adding storage controller(s) to VM.
2025-07-25 22:36:03 (20508): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-25 22:36:06 (20508): Adding VirtualBox Guest Additions to VM.
2025-07-25 22:36:06 (20508): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-25 22:36:07 (20508): forwarding host port 61565 to guest port 80
2025-07-25 22:36:07 (20508): Enabling remote desktop for VM.
2025-07-25 22:36:07 (20508): Required extension pack not installed, remote desktop not enabled.
2025-07-25 22:36:07 (20508): Enabling shared directory for VM.
2025-07-25 22:36:08 (20508): Starting VM using VBoxManage interface. (boinc_44ee8f9abda10094, slot#3)
2025-07-25 22:36:15 (20508): Successfully started VM. (PID = '19828')
2025-07-25 22:36:15 (20508): Reporting VM Process ID to BOINC.
2025-07-25 22:36:15 (20508): Guest Log: BIOS: VirtualBox 7.1.10
2025-07-25 22:36:15 (20508): Guest Log: CPUID EDX: 0x178bfbff
2025-07-25 22:36:15 (20508): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-25 22:36:15 (20508): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-25 22:36:15 (20508): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-25 22:36:15 (20508): Detected: Web Application Enabled (http://localhost:61565)
2025-07-25 22:36:15 (20508): Preference change detected
2025-07-25 22:36:15 (20508): Setting CPU throttle for VM. (100%)
2025-07-25 22:36:15 (20508): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-25 22:36:17 (20508): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-25 22:36:17 (20508): Guest Log: BIOS: Booting from Hard Disk...
2025-07-25 22:36:20 (20508): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-25 22:36:20 (20508): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-25 22:36:20 (20508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-25 22:36:29 (20508): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-25 22:36:29 (20508): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-25 22:36:36 (20508): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-25 22:36:36 (20508): Guest Log: 00:00:00.000224 main     Log opened 2025-07-25T22:36:34.581335000Z
2025-07-25 22:36:36 (20508): Guest Log: 00:00:00.000328 main     OS Product: Linux
2025-07-25 22:36:36 (20508): Guest Log: 00:00:00.000358 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-25 22:36:36 (20508): Guest Log: 00:00:00.000382 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-25 22:36:36 (20508): Guest Log: 00:00:00.000404 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-25 22:36:36 (20508): Guest Log: 00:00:00.000405 main     Process ID: 1379
2025-07-25 22:36:36 (20508): Guest Log: 00:00:00.000405 main     Package type: LINUX_64BITS_GENERIC
2025-07-25 22:36:36 (20508): Guest Log: 00:00:00.002408 main     5.2.32 r132073 started. Verbose level = 0
2025-07-25 22:36:36 (20508): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-25 22:36:36 (20508): Guest Log: [INFO] Mounting shared directory
2025-07-25 22:36:37 (20508): Guest Log: [INFO] Checking for init_data.xml
2025-07-25 22:36:41 (20508): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-25 22:36:41 (20508): Guest Log: [INFO] Detected branch: prod
2025-07-25 22:36:41 (20508): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-25 22:36:41 (20508): Guest Log: Copying input files
2025-07-25 22:36:42 (20508): Guest Log: Copied input files into RunAtlas.
2025-07-25 22:36:43 (20508): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-25 22:36:43 (20508): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-25 22:36:43 (20508): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-25 22:36:43 (20508): Guest Log: Further information can be found at the LHC@home message board.
2025-07-25 22:36:46 (20508): Guest Log: 00:00:10.026993 timesync vgsvcTimeSyncWorker: Radical guest time change: 10 811 224 040 000ns (GuestNow=1 753 493 805 809 507 000 ns GuestLast=1 753 482 994 585 467 000 ns fSetTimeLastLoop=true )
2025-07-25 22:36:52 (20508): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-25 22:36:52 (20508): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-25 22:36:52 (20508): Guest Log: 2.6.3.0 1659 0 32196 148759 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-25 22:36:53 (20508): Guest Log: copied the webapp to /var/www
2025-07-25 22:36:53 (20508): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-25 22:36:53 (20508): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-25 22:36:54 (20508): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-25 22:36:54 (20508): Guest Log:  *** Starting ATLAS job. (PandaID=6745018166 taskID=45743349) ***
2025-07-26 00:18:34 (20508): Status Report: Elapsed Time: '6000.966696'
2025-07-26 00:18:34 (20508): Status Report: CPU Time: '36169.984375'
2025-07-26 02:02:13 (20508): Status Report: Elapsed Time: '12001.058613'
2025-07-26 02:02:13 (20508): Status Report: CPU Time: '74563.093750'
2025-07-26 02:48:49 (20508): Guest Log:  *** Job finished ***
2025-07-26 02:48:49 (20508): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:24,995 | INFO     | all workflow threads have been joined
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:24,995 | INFO     | end of generic workflow (traces error code: 0)
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:24,996 | INFO     | traces error code: 0
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:24,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:43,701 | INFO     | PID=6012 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:43,701 | INFO     | found 0 job(s) in 20 queues
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:43,701 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:43,702 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:43,702 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:43,702 | INFO     | [monitor] control thread has ended
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:43,786 [wrapper] ==== pilot stdout END ====
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:43,795 [wrapper] ==== wrapper stdout RESUME ====
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:43,803 [wrapper] pilotpid: 6012
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:43,812 [wrapper] Pilot exit status: 0
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:46,993 [wrapper] pandaids: 6745018166
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:47,093 [wrapper] cleanup supervisor_pilot 14679 6013
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:47,129 [wrapper] Test setup, not cleaning
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:47,148 [wrapper] apfmon messages muted
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:47,165 [wrapper] ==== wrapper stdout END ====
2025-07-26 02:48:49 (20508): Guest Log: 2025-07-26 05:48:47,184 [wrapper] ==== wrapper stderr END ====
2025-07-26 02:48:49 (20508): Guest Log:  *** Error codes and diagnostics ***
2025-07-26 02:48:49 (20508): Guest Log:     "exeErrorCode": 0,
2025-07-26 02:48:49 (20508): Guest Log:     "exeErrorDiag": "",
2025-07-26 02:48:49 (20508): Guest Log:     "pilotErrorCode": 0,
2025-07-26 02:48:49 (20508): Guest Log:     "pilotErrorDiag": "",
2025-07-26 02:48:49 (20508): Guest Log:  *** Listing of results directory ***
2025-07-26 02:48:49 (20508): Guest Log: total 205868
2025-07-26 02:48:49 (20508): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 25 11:39 pilot3.tar.gz
2025-07-26 02:48:49 (20508): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 25 11:47 queuedata.json
2025-07-26 02:48:49 (20508): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 25 11:48 runpilot2-wrapper.sh
2025-07-26 02:48:49 (20508): Guest Log: -rwxr-xr-x. 1 atlas atlas      9067 Jul 26 01:36 init_data.xml
2025-07-26 02:48:49 (20508): Guest Log: -rwxr-xr-x. 1 atlas atlas    542893 Jul 26 01:36 input.tar.gz
2025-07-26 02:48:49 (20508): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 26 01:36 start_atlas.sh
2025-07-26 02:48:49 (20508): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 26 01:36 EVNT.45743347._001185.pool.root.1 -> /data/./ATLAS.root_0
2025-07-26 02:48:49 (20508): Guest Log: -rw-r--r--. 1 atlas atlas      2562 Jul 26 01:36 pandaJob.out
2025-07-26 02:48:49 (20508): Guest Log: -rw-------. 1 atlas atlas    979985 Jul 26 01:38 agis_schedconf.cvmfs.json
2025-07-26 02:48:49 (20508): Guest Log: drwx------. 4 atlas atlas      4096 Jul 26 01:38 pilot3
2025-07-26 02:48:49 (20508): Guest Log: -rw-------. 1 atlas atlas 203888443 Jul 26 05:47 HITS.45743349._020661.pool.root.1
2025-07-26 02:48:49 (20508): Guest Log: -rw-------. 1 atlas atlas      1037 Jul 26 05:47 memory_monitor_summary.json
2025-07-26 02:48:49 (20508): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 26 05:47 agis_ddmendpoints.agis.ALL.json
2025-07-26 02:48:49 (20508): Guest Log: -rw-------. 1 atlas atlas    386110 Jul 26 05:47 log.45743349._020661.job.log.tgz.1
2025-07-26 02:48:49 (20508): Guest Log: -rw-------. 1 atlas atlas      7805 Jul 26 05:48 heartbeat.json
2025-07-26 02:48:49 (20508): Guest Log: -rw-------. 1 atlas atlas        95 Jul 26 05:48 pilot_heartbeat.json
2025-07-26 02:48:49 (20508): Guest Log: -rw-------. 1 atlas atlas       744 Jul 26 05:48 pilotlog.txt
2025-07-26 02:48:49 (20508): Guest Log: -rw-------. 1 atlas atlas   1170424 Jul 26 05:48 log.45743349._020661.job.log.1
2025-07-26 02:48:49 (20508): Guest Log: -rw-------. 1 atlas atlas       357 Jul 26 05:48 output.list
2025-07-26 02:48:49 (20508): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 26 05:48 runtime_log
2025-07-26 02:48:49 (20508): Guest Log: -rw-------. 1 atlas atlas   1576960 Jul 26 05:48 result.tar.gz
2025-07-26 02:48:49 (20508): Guest Log: -rw-------. 1 atlas atlas       672 Jul 26 05:48 UNxNDmL5Vz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1TPLDmwSZJdn.diag
2025-07-26 02:48:49 (20508): Guest Log: -rw-r--r--. 1 atlas atlas      8623 Jul 26 05:48 runtime_log.err
2025-07-26 02:48:49 (20508): Guest Log: Looking for outputfile HITS.45743349._020661.pool.root.1
2025-07-26 02:48:49 (20508): Guest Log: HITS file was successfully produced
2025-07-26 02:48:49 (20508): Guest Log: -rw-------. 1 atlas atlas 203888443 Jul 26 05:47 /home/atlas/RunAtlas/HITS.45743349._020661.pool.root.1
2025-07-26 02:48:51 (20508): Guest Log: Successfully finished the ATLAS job!
2025-07-26 02:48:51 (20508): Guest Log: Copying the results back to the shared directory!
2025-07-26 02:48:51 (20508): Guest Log:  *** Contents of shared directory: ***
2025-07-26 02:48:51 (20508): Guest Log: total 341960
2025-07-26 02:48:51 (20508): Guest Log: -rwxrwxrwx. 1 root root 144123117 Jul 26 01:35 ATLAS.root_0
2025-07-26 02:48:51 (20508): Guest Log: -rwxrwxrwx. 1 root root 203888443 Jul 26 05:48 HITS.pool.root.1
2025-07-26 02:48:51 (20508): Guest Log: -rwxrwxrwx. 1 root root      9067 Jul 26 01:35 init_data.xml
2025-07-26 02:48:51 (20508): Guest Log: -rwxrwxrwx. 1 root root    542893 Jul 25 18:00 input.tar.gz
2025-07-26 02:48:51 (20508): Guest Log: -rwxrwxrwx. 1 root root   1576960 Jul 26 05:48 result.tar.gz
2025-07-26 02:48:51 (20508): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 25 18:00 start_atlas.sh
2025-07-26 02:48:51 (20508): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-26 02:48:51 (20508): VM Completion File Detected.
2025-07-26 02:48:51 (20508): Powering off VM.
2025-07-26 02:48:53 (20508): Successfully stopped VM.
2025-07-26 02:48:53 (20508): Deregistering VM. (boinc_44ee8f9abda10094, slot#3)
2025-07-26 02:48:53 (20508): Removing network bandwidth throttle group from VM.
2025-07-26 02:48:53 (20508): Removing VM from VirtualBox.
02:48:58 (20508): called boinc_finish(0)

</stderr_txt>
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