Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:56:26 (956057): wrapper (7.7.26015): starting
13:56:26 (956057): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 13:56:26] Arguments: --nthreads 12
[2025-07-25 13:56:26] Threads: 12
[2025-07-25 13:56:26] Checking for CVMFS
[2025-07-25 13:56:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 13:56:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 13:56:26] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 13:56:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 13:56:27] 2.13.0.0 1071838 15828 315696 148748 2 393 21327953 32935937 25017 16776704 0 50501544 99.556 58232303 10112 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 13:56:27] CVMFS is ok
[2025-07-25 13:56:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 13:56:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 13:56:27] Further information can be found at the LHC@home message board.
[2025-07-25 13:56:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 13:56:27] Checking for apptainer binary...
[2025-07-25 13:56:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 13:56:27] Running /usr/bin/apptainer --version
[2025-07-25 13:56:27] apptainer version 1.4.1-1.el9
[2025-07-25 13:56:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 13:56:27] c-8-39.aglt2.org
[2025-07-25 13:56:27] apptainer works
[2025-07-25 13:56:27] Set ATHENA_PROC_NUMBER=12
[2025-07-25 13:56:27] Set ATHENA_CORE_NUMBER=12
[2025-07-25 13:56:27] Starting ATLAS job with PandaID=6745015417
[2025-07-25 13:56:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 20:27:59]  *** The last 200 lines of the pilot log: ***
[2025-07-25 20:27:59] 2025-07-26 00:27:20,289 | INFO     | mean x: 1753477950.4502618
[2025-07-25 20:27:59] 2025-07-26 00:27:20,289 | INFO     | mean y: 2321648.117801047
[2025-07-25 20:27:59] 2025-07-26 00:27:20,289 | INFO     | -- intersect: -10586027752.90619
[2025-07-25 20:27:59] 2025-07-26 00:27:20,289 | INFO     | intersect: -10586027752.90619
[2025-07-25 20:27:59] 2025-07-26 00:27:20,297 | INFO     | chi2: 2.736388024099218
[2025-07-25 20:27:59] 2025-07-26 00:27:20,298 | INFO     | sum of square deviations: 16615615535.320932
[2025-07-25 20:27:59] 2025-07-26 00:27:20,311 | INFO     | sum of deviations: 129394580996.97868
[2025-07-25 20:27:59] 2025-07-26 00:27:20,311 | INFO     | mean x: 1753477797.9575596
[2025-07-25 20:27:59] 2025-07-26 00:27:20,311 | INFO     | mean y: 2327287.49867374
[2025-07-25 20:27:59] 2025-07-26 00:27:20,312 | INFO     | -- intersect: -13652931193.410852
[2025-07-25 20:27:59] 2025-07-26 00:27:20,312 | INFO     | intersect: -13652931193.410852
[2025-07-25 20:27:59] 2025-07-26 00:27:20,326 | INFO     | chi2: 2.0356755823979387
[2025-07-25 20:27:59] 2025-07-26 00:27:20,326 | INFO     | current chi2=2.0356755823979387 (change=25.60720320108638 %)
[2025-07-25 20:27:59] 2025-07-26 00:27:20,327 | INFO     | sum of square deviations: 15963286046.395185
[2025-07-25 20:27:59] 2025-07-26 00:27:20,335 | INFO     | sum of deviations: 128259764524.99182
[2025-07-25 20:27:59] 2025-07-26 00:27:20,340 | INFO     | mean x: 1753477645.4596775
[2025-07-25 20:27:59] 2025-07-26 00:27:20,340 | INFO     | mean y: 2327024.7661290322
[2025-07-25 20:27:59] 2025-07-26 00:27:20,340 | INFO     | -- intersect: -14086290397.28916
[2025-07-25 20:27:59] 2025-07-26 00:27:20,340 | INFO     | intersect: -14086290397.28916
[2025-07-25 20:27:59] 2025-07-26 00:27:20,341 | INFO     | chi2: 2.031946161036062
[2025-07-25 20:27:59] 2025-07-26 00:27:20,341 | INFO     | current chi2=2.031946161036062 (change=0.18320312893293725 %)
[2025-07-25 20:27:59] 2025-07-26 00:27:20,341 | INFO     | right removable region: 371
[2025-07-25 20:27:59] 2025-07-26 00:27:20,342 | INFO     | sum of square deviations: 16615440585.480185
[2025-07-25 20:27:59] 2025-07-26 00:27:20,352 | INFO     | sum of deviations: 30713140652.480076
[2025-07-25 20:27:59] 2025-07-26 00:27:20,352 | INFO     | mean x: 1753478102.9628646
[2025-07-25 20:27:59] 2025-07-26 00:27:20,352 | INFO     | mean y: 2338360.9628647217
[2025-07-25 20:27:59] 2025-07-26 00:27:20,361 | INFO     | -- intersect: -3238913011.8358064
[2025-07-25 20:27:59] 2025-07-26 00:27:20,361 | INFO     | intersect: -3238913011.8358064
[2025-07-25 20:27:59] 2025-07-26 00:27:20,356 | INFO     | monitor loop #1029: job 0:6745015417 is in state 'finished'
[2025-07-25 20:27:59] 2025-07-26 00:27:20,366 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 20:27:59] 2025-07-26 00:27:20,362 | INFO     | chi2: 0.9191536945215606
[2025-07-25 20:27:59] 2025-07-26 00:27:20,366 | INFO     | current chi2=0.9191536945215606 (change=66.40996501860756 %)
[2025-07-25 20:27:59] 2025-07-26 00:27:20,367 | INFO     | sum of square deviations: 15963028380.674768
[2025-07-25 20:27:59] 2025-07-26 00:27:20,377 | INFO     | sum of deviations: 18367945410.177452
[2025-07-25 20:27:59] 2025-07-26 00:27:20,377 | INFO     | mean x: 1753478255.4704301
[2025-07-25 20:27:59] 2025-07-26 00:27:20,377 | INFO     | mean y: 2341230.0161290322
[2025-07-25 20:27:59] 2025-07-26 00:27:20,377 | INFO     | -- intersect: -2015308059.7267616
[2025-07-25 20:27:59] 2025-07-26 00:27:20,377 | INFO     | intersect: -2015308059.7267616
[2025-07-25 20:27:59] 2025-07-26 00:27:20,378 | INFO     | chi2: 0.8380715913245232
[2025-07-25 20:27:59] 2025-07-26 00:27:20,378 | INFO     | current chi2=0.8380715913245232 (change=8.821386856225644 %)
[2025-07-25 20:27:59] 2025-07-26 00:27:20,378 | INFO     | left removable region: 20
[2025-07-25 20:27:59] 2025-07-26 00:27:20,379 | INFO     | sum of square deviations: 13409428071.954388
[2025-07-25 20:27:59] 2025-07-26 00:27:20,389 | INFO     | sum of deviations: 27109037325.30767
[2025-07-25 20:27:59] 2025-07-26 00:27:20,389 | INFO     | mean x: 1753478224.988604
[2025-07-25 20:27:59] 2025-07-26 00:27:20,389 | INFO     | mean y: 2351598.076923077
[2025-07-25 20:27:59] 2025-07-26 00:27:20,389 | INFO     | -- intersect: -3542550272.1041965
[2025-07-25 20:27:59] 2025-07-26 00:27:20,389 | INFO     | intersect: -3542550272.1041965
[2025-07-25 20:27:59] 2025-07-26 00:27:20,390 | INFO     | chi2: 0.0903706903460851
[2025-07-25 20:27:59] 2025-07-26 00:27:20,390 | INFO     | -- intersect: -3542550272.1041965
[2025-07-25 20:27:59] 2025-07-26 00:27:20,390 | INFO     | current memory leak: 2.02 B/s (using 351 data points, chi2=0.09)
[2025-07-25 20:27:59] 2025-07-26 00:27:20,391 | INFO     | could have reported an average CPU frequency of 2635 MHz (16 samples)
[2025-07-25 20:27:59] 2025-07-26 00:27:20,399 | INFO     | ..............................
[2025-07-25 20:27:59] 2025-07-26 00:27:20,400 | INFO     | . Timing measurements:
[2025-07-25 20:27:59] 2025-07-26 00:27:20,400 | INFO     | . get job = 0 s
[2025-07-25 20:27:59] 2025-07-26 00:27:20,400 | INFO     | . initial setup = 6 s
[2025-07-25 20:27:59] 2025-07-26 00:27:20,400 | INFO     | . payload setup = 25 s
[2025-07-25 20:27:59] 2025-07-26 00:27:20,400 | INFO     | . stage-in = 0 s
[2025-07-25 20:27:59] 2025-07-26 00:27:20,400 | INFO     | . payload execution = 23297 s
[2025-07-25 20:27:59] 2025-07-26 00:27:20,400 | INFO     | . stage-out = 4 s
[2025-07-25 20:27:59] 2025-07-26 00:27:20,401 | INFO     | . log creation = 0 s
[2025-07-25 20:27:59] 2025-07-26 00:27:20,401 | INFO     | ..............................
[2025-07-25 20:27:59] 2025-07-26 00:27:20,581 | INFO     | 
[2025-07-25 20:27:59] 2025-07-26 00:27:20,581 | INFO     | job summary report
[2025-07-25 20:27:59] 2025-07-26 00:27:20,581 | INFO     | --------------------------------------------------
[2025-07-25 20:27:59] 2025-07-26 00:27:20,581 | INFO     | PanDA job id: 6745015417
[2025-07-25 20:27:59] 2025-07-26 00:27:20,582 | INFO     | task id: 45743349
[2025-07-25 20:27:59] 2025-07-26 00:27:20,582 | INFO     | errors: (none)
[2025-07-25 20:27:59] 2025-07-26 00:27:20,582 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 20:27:59] 2025-07-26 00:27:20,582 | INFO     | pilot state: finished 
[2025-07-25 20:27:59] 2025-07-26 00:27:20,582 | INFO     | transexitcode: 0
[2025-07-25 20:27:59] 2025-07-26 00:27:20,582 | INFO     | exeerrorcode: 0
[2025-07-25 20:27:59] 2025-07-26 00:27:20,582 | INFO     | exeerrordiag: 
[2025-07-25 20:27:59] 2025-07-26 00:27:20,582 | INFO     | exitcode: 0
[2025-07-25 20:27:59] 2025-07-26 00:27:20,583 | INFO     | exitmsg: OK
[2025-07-25 20:27:59] 2025-07-26 00:27:20,583 | INFO     | cpuconsumptiontime: 63305 s
[2025-07-25 20:27:59] 2025-07-26 00:27:20,583 | INFO     | nevents: 400
[2025-07-25 20:27:59] 2025-07-26 00:27:20,583 | INFO     | neventsw: 0
[2025-07-25 20:27:59] 2025-07-26 00:27:20,583 | INFO     | pid: 977527
[2025-07-25 20:27:59] 2025-07-26 00:27:20,583 | INFO     | pgrp: 977527
[2025-07-25 20:27:59] 2025-07-26 00:27:20,583 | INFO     | corecount: 12
[2025-07-25 20:27:59] 2025-07-26 00:27:20,583 | INFO     | event service: False
[2025-07-25 20:27:59] 2025-07-26 00:27:20,584 | INFO     | sizes: {0: 2397246, 1: 2397501, 2: 2397529, 13: 2397529, 15: 2397847, 24: 2397875, 23326: 2431503, 23327: 2431502, 23333: 2440556, 23334: 2440612, 23364: 2440806}
[2025-07-25 20:27:59] 2025-07-26 00:27:20,584 | INFO     | --------------------------------------------------
[2025-07-25 20:27:59] 2025-07-26 00:27:20,584 | INFO     | 
[2025-07-25 20:27:59] 2025-07-26 00:27:20,584 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 20:27:59] 2025-07-26 00:27:20,757 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,757 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,758 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,758 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,758 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,758 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,758 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,758 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,758 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,759 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,759 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,759 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,760 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 20:27:59] 2025-07-26 00:27:20,760 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,760 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 20:27:59] 2025-07-26 00:27:20,760 | INFO     | job 6745015417 has completed (purged errors)
[2025-07-25 20:27:59] 2025-07-26 00:27:20,760 | INFO     | overall cleanup function is called
[2025-07-25 20:27:59] 2025-07-26 00:27:21,809 | INFO     | --- collectZombieJob: --- 10, [977527]
[2025-07-25 20:27:59] 2025-07-26 00:27:21,809 | INFO     | zombie collector waiting for pid 977527
[2025-07-25 20:27:59] 2025-07-26 00:27:21,809 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 20:27:59] 2025-07-26 00:27:21,809 | INFO     | collected zombie processes
[2025-07-25 20:27:59] 2025-07-26 00:27:21,809 | INFO     | will attempt to kill all subprocesses of pid=977527
[2025-07-25 20:27:59] 2025-07-26 00:27:23,391 | INFO     | PID=965679 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-25 20:27:59] 2025-07-26 00:27:23,414 | INFO     | .. there are 39 such processes running
[2025-07-25 20:27:59] 2025-07-26 00:27:23,741 | INFO     | process IDs to be killed: [977527] (in reverse order)
[2025-07-25 20:27:59] 2025-07-26 00:27:24,123 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 20:27:59] 2025-07-26 00:27:24,124 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 20:27:59] 2025-07-26 00:27:24,160 | INFO     | did not find any defunct processes belonging to 977527
[2025-07-25 20:27:59] 2025-07-26 00:27:24,194 | INFO     | did not find any defunct processes belonging to 977527
[2025-07-25 20:27:59] 2025-07-26 00:27:24,194 | INFO     | ready for new job
[2025-07-25 20:27:59] 2025-07-26 00:27:24,194 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 20:27:59] 2025-07-26 00:27:24,201 | INFO     | ***************************************
[2025-07-25 20:27:59] 2025-07-26 00:27:24,201 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 20:27:59] 2025-07-26 00:27:24,201 | INFO     | ***************************************
[2025-07-25 20:27:59] 2025-07-26 00:27:24,201 | INFO     | 
[2025-07-25 20:27:59] 2025-07-26 00:27:24,218 | INFO     | architecture information:
[2025-07-25 20:27:59] 2025-07-26 00:27:24,226 | INFO     | executing command: cat /etc/os-release
[2025-07-25 20:27:59] 2025-07-26 00:27:24,359 | INFO     | cat /etc/os-release:
[2025-07-25 20:27:59] NAME="CentOS Linux"
[2025-07-25 20:27:59] VERSION="7 (Core)"
[2025-07-25 20:27:59] ID="centos"
[2025-07-25 20:27:59] ID_LIKE="rhel fedora"
[2025-07-25 20:27:59] VERSION_ID="7"
[2025-07-25 20:27:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 20:27:59] ANSI_COLOR="0;31"
[2025-07-25 20:27:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 20:27:59] HOME_URL="https://www.centos.org/"
[2025-07-25 20:27:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 20:27:59] 
[2025-07-25 20:27:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 20:27:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 20:27:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 20:27:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 20:27:59] 
[2025-07-25 20:27:59] 2025-07-26 00:27:24,359 | INFO     | ***************************************
[2025-07-25 20:27:59] 2025-07-26 00:27:24,863 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 20:27:59] 2025-07-26 00:27:24,986 | INFO     | sufficient remaining disk space (76623642624 B)
[2025-07-25 20:27:59] 2025-07-26 00:27:24,986 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 20:27:59] 2025-07-26 00:27:24,987 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 20:27:59] 2025-07-26 00:27:24,987 | INFO     | update_server=False
[2025-07-25 20:27:59] 2025-07-26 00:27:24,987 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 20:27:59] 2025-07-26 00:27:24,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 20:27:59] 2025-07-26 00:27:25,127 | INFO     | all payload control threads have been joined
[2025-07-25 20:27:59] 2025-07-26 00:27:25,400 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-25 20:27:59] 2025-07-26 00:27:25,400 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-25 20:27:59] 2025-07-26 00:27:25,400 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 20:27:59] 2025-07-26 00:27:25,400 | INFO     | will abort loop
[2025-07-25 20:27:59] 2025-07-26 00:27:25,537 | INFO     | all data control threads have been joined
[2025-07-25 20:27:59] 2025-07-26 00:27:25,598 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 20:27:59] 2025-07-26 00:27:25,993 | INFO     | [job] retrieve thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:26,078 | INFO     | [payload] validate_post thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:26,133 | INFO     | [payload] control thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:26,321 | INFO     | all job control threads have been joined
[2025-07-25 20:27:59] 2025-07-26 00:27:26,406 | INFO     | [job] job monitor thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:26,543 | INFO     | [data] control thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:26,551 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:26,604 | INFO     | [job] queue monitor thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:26,657 | INFO     | [job] validate thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:26,994 | INFO     | [data] copytool_out thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:26,996 | INFO     | [payload] failed_post thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:27,323 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:27,327 | INFO     | [job] control thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:27,385 | INFO     | [data] copytool_in thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:27,413 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:27,421 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:27,551 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 20:27:59] 2025-07-26 00:27:31,560 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 20:27:59] 2025-07-26 00:27:33,375 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139706638567232)>', '<ExcThread(monitor, started 139706134152960)>']
[2025-07-25 20:27:59] 2025-07-26 00:27:38,402 | INFO     | all workflow threads have been joined
[2025-07-25 20:27:59] 2025-07-26 00:27:38,402 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 20:27:59] 2025-07-26 00:27:38,402 | INFO     | traces error code: 0
[2025-07-25 20:27:59] 2025-07-26 00:27:38,403 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 20:27:59] 2025-07-26 00:27:56,915 | INFO     | PID=965679 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-25 20:27:59] 2025-07-26 00:27:56,916 | INFO     | .. there are 39 such processes running
[2025-07-25 20:27:59] 2025-07-26 00:27:56,918 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 20:27:59] 2025-07-26 00:27:56,918 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 20:27:59] 2025-07-26 00:27:56,918 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 20:27:59] 2025-07-26 00:27:56,918 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 20:27:59] 2025-07-26 00:27:56,918 | CRITICAL | thread 'MainThread' is not alive
[2025-07-25 20:27:59] 2025-07-26 00:27:56,918 | INFO     | [monitor] control thread has ended
[2025-07-25 20:27:59] 2025-07-26 00:27:57,743 [wrapper] ==== pilot stdout END ====
[2025-07-25 20:27:59] 2025-07-26 00:27:57,793 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 20:27:59] 2025-07-26 00:27:57,842 [wrapper] pilotpid: 965679
[2025-07-25 20:27:59] 2025-07-26 00:27:57,881 [wrapper] Pilot exit status: 0
[2025-07-25 20:27:59] 2025-07-26 00:27:58,129 [wrapper] pandaids: 6745015417
[2025-07-25 20:27:59] 2025-07-26 00:27:58,584 [wrapper] cleanup supervisor_pilot 2210981 965680
[2025-07-25 20:27:59] 2025-07-26 00:27:58,623 [wrapper] Test setup, not cleaning
[2025-07-25 20:27:59] 2025-07-26 00:27:58,663 [wrapper] apfmon messages muted
[2025-07-25 20:27:59] 2025-07-26 00:27:58,702 [wrapper] ==== wrapper stdout END ====
[2025-07-25 20:27:59] 2025-07-26 00:27:58,727 [wrapper] ==== wrapper stderr END ====
[2025-07-25 20:27:59]  *** Error codes and diagnostics ***
[2025-07-25 20:27:59]     "exeErrorCode": 0,
[2025-07-25 20:27:59]     "exeErrorDiag": "",
[2025-07-25 20:27:59]     "pilotErrorCode": 0,
[2025-07-25 20:27:59]     "pilotErrorDiag": "",
[2025-07-25 20:27:59]  *** Listing of results directory ***
[2025-07-25 20:27:59] total 355924
[2025-07-25 20:27:59] -rw-r--r--. 1 boincer umatlas    550332 Jun 18 11:33 pilot3.tar.gz
[2025-07-25 20:27:59] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 07:26 queuedata.json
[2025-07-25 20:27:59] -rwx------. 1 boincer umatlas     36292 Jul 25 07:27 runpilot2-wrapper.sh
[2025-07-25 20:27:59] -rw-r--r--. 1 boincer umatlas       100 Jul 25 13:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 20:27:59] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 13:56 run_atlas
[2025-07-25 20:27:59] -rw-r--r--. 1 boincer umatlas       105 Jul 25 13:56 job.xml
[2025-07-25 20:27:59] -rw-r--r--. 2 boincer umatlas 148468951 Jul 25 13:56 EVNT.45743347._001073.pool.root.1
[2025-07-25 20:27:59] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 13:56 start_atlas.sh
[2025-07-25 20:27:59] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 13:56 shared
[2025-07-25 20:27:59] -rw-r--r--. 2 boincer umatlas    564556 Jul 25 13:56 input.tar.gz
[2025-07-25 20:27:59] -rw-r--r--. 1 boincer umatlas         0 Jul 25 13:56 boinc_lockfile
[2025-07-25 20:27:59] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 13:56 pandaJob.out
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas    979309 Jul 25 13:57 agis_schedconf.cvmfs.json
[2025-07-25 20:27:59] drwx------. 6 boincer umatlas      4096 Jul 25 13:57 pilot3
[2025-07-25 20:27:59] -rw-r--r--. 1 boincer umatlas      6614 Jul 25 20:19 init_data.xml
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas 208066043 Jul 25 20:25 HITS.45743349._020334.pool.root.1
[2025-07-25 20:27:59] -rw-r--r--. 1 boincer umatlas       531 Jul 25 20:25 boinc_task_state.xml
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas      1041 Jul 25 20:26 memory_monitor_summary.json
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas   1593052 Jul 25 20:26 agis_ddmendpoints.agis.ALL.json
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas    495989 Jul 25 20:26 log.45743349._020334.job.log.tgz.1
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas      7818 Jul 25 20:27 heartbeat.json
[2025-07-25 20:27:59] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 20:27 boinc_mmap_file
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas        95 Jul 25 20:27 pilot_heartbeat.json
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas       892 Jul 25 20:27 pilotlog.txt
[2025-07-25 20:27:59] -rw-r--r--. 1 boincer umatlas        28 Jul 25 20:27 wrapper_checkpoint.txt
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas   1509040 Jul 25 20:27 log.45743349._020334.job.log.1
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas       357 Jul 25 20:27 output.list
[2025-07-25 20:27:59] -rw-r--r--. 1 boincer umatlas       620 Jul 25 20:27 runtime_log
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas   2027520 Jul 25 20:27 result.tar.gz
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas       655 Jul 25 20:27 ZZaNDmOlVz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyPPLDmGje8qm.diag
[2025-07-25 20:27:59] -rw-r--r--. 1 boincer umatlas      8653 Jul 25 20:27 runtime_log.err
[2025-07-25 20:27:59] -rw-r--r--. 1 boincer umatlas     21252 Jul 25 20:27 stderr.txt
[2025-07-25 20:27:59] HITS file was successfully produced:
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas 208066043 Jul 25 20:25 shared/HITS.pool.root.1
[2025-07-25 20:27:59]  *** Contents of shared directory: ***
[2025-07-25 20:27:59] total 350736
[2025-07-25 20:27:59] -rw-r--r--. 2 boincer umatlas 148468951 Jul 25 13:56 ATLAS.root_0
[2025-07-25 20:27:59] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 13:56 start_atlas.sh
[2025-07-25 20:27:59] -rw-r--r--. 2 boincer umatlas    564556 Jul 25 13:56 input.tar.gz
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas 208066043 Jul 25 20:25 HITS.pool.root.1
[2025-07-25 20:27:59] -rw-------. 1 boincer umatlas   2027520 Jul 25 20:27 result.tar.gz
20:28:01 (956057): run_atlas exited; CPU time 64293.309244
20:28:01 (956057): called boinc_finish(0)

</stderr_txt>
]]>

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