Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:15:35 (2760269): wrapper (7.7.26015): starting
15:15:35 (2760269): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 15:15:35] Arguments: --nthreads 12
[2025-07-25 15:15:35] Threads: 12
[2025-07-25 15:15:35] Checking for CVMFS
[2025-07-25 15:15:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 15:15:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 15:15:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 15:15:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 15:15:35] 2.12.6.0 1267368 15888 336876 148750 1 186 20331843 32935937 10997 16776704 0 30078403 99.696 59331818 30311 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 15:15:35] CVMFS is ok
[2025-07-25 15:15:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 15:15:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 15:15:35] Further information can be found at the LHC@home message board.
[2025-07-25 15:15:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 15:15:35] Checking for apptainer binary...
[2025-07-25 15:15:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 15:15:35] Running /usr/bin/apptainer --version
[2025-07-25 15:15:36] apptainer version 1.4.1-1.el9
[2025-07-25 15:15:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 15:15:36] c6-2-29-3.aglt2.org
[2025-07-25 15:15:36] apptainer works
[2025-07-25 15:15:36] Set ATHENA_PROC_NUMBER=12
[2025-07-25 15:15:36] Set ATHENA_CORE_NUMBER=12
[2025-07-25 15:15:36] Starting ATLAS job with PandaID=6745016175
[2025-07-25 15:15:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 16:53:27]  *** The last 200 lines of the pilot log: ***
[2025-07-25 16:53:27] 2025-07-25 20:52:42,854 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 16:53:27] 2025-07-25 20:52:42,854 | INFO     | summary of transferred files:
[2025-07-25 16:53:27] 2025-07-25 20:52:42,854 | INFO     |  -- lfn=log.45743349._020429.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 16:53:27] 2025-07-25 20:52:42,855 | INFO     | stage-out finished correctly
[2025-07-25 16:53:27] 2025-07-25 20:52:44,509 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 16:53:27] 2025-07-25 20:52:44,746 | WARNING  | process 2770300 can no longer be monitored (due to stat problems) - aborting
[2025-07-25 16:53:27] 2025-07-25 20:52:44,746 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745016175/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 16:53:27] 2025-07-25 20:52:44,747 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745016175/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 16:53:27] 2025-07-25 20:52:44,748 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3998384 B
[2025-07-25 16:53:27] 2025-07-25 20:52:44,748 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15785 B
[2025-07-25 16:53:27] 2025-07-25 20:52:44,748 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 16:53:27] 2025-07-25 20:52:44,772 | INFO     | sufficient remaining disk space (76452724736 B)
[2025-07-25 16:53:27] 2025-07-25 20:52:44,772 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-25 16:53:27] 2025-07-25 20:52:44,773 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6745016175: 4304751 B (within 2537553920 B limit)
[2025-07-25 16:53:27] 2025-07-25 20:52:44,774 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6745016175/HITS.45743349._020429.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-25 16:53:27] 2025-07-25 20:52:44,774 | INFO     | total size of present files: 0 B (workdir size: 4304751 B)
[2025-07-25 16:53:27] 2025-07-25 20:52:44,774 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6745016175/HITS.45743349._020429.pool.root.1 since it does not exist
[2025-07-25 16:53:27] 2025-07-25 20:52:45,104 | INFO     | number of running child processes to parent process 2770300: 1
[2025-07-25 16:53:27] 2025-07-25 20:52:45,104 | INFO     | maximum number of monitored processes: 6
[2025-07-25 16:53:27] 2025-07-25 20:52:47,552 | INFO     | job 6745016175 has state=finished
[2025-07-25 16:53:27] 2025-07-25 20:52:47,553 | INFO     | preparing for final server update for job 6745016175 in state='finished'
[2025-07-25 16:53:27] 2025-07-25 20:52:47,553 | INFO     | this job has now completed (state=finished)
[2025-07-25 16:53:27] 2025-07-25 20:52:47,553 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 16:53:27] 2025-07-25 20:52:47,553 | INFO     | log transfer has been attempted: DONE
[2025-07-25 16:53:27] 2025-07-25 20:52:47,553 | INFO     | job 6745016175 has finished - writing final server update
[2025-07-25 16:53:27] 2025-07-25 20:52:47,554 | INFO     | total number of processed events: 400 (read)
[2025-07-25 16:53:27] 2025-07-25 20:52:47,555 | INFO     | executing command: lscpu
[2025-07-25 16:53:27] 2025-07-25 20:52:47,607 | INFO     | monitor loop #399: job 0:6745016175 is in state 'finished'
[2025-07-25 16:53:27] 2025-07-25 20:52:47,608 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 16:53:27] 2025-07-25 20:52:47,611 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 16:53:27] 2025-07-25 20:52:50,110 | INFO     | monitor loop #400: job 0:6745016175 is in state 'finished'
[2025-07-25 16:53:27] 2025-07-25 20:52:50,111 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 16:53:27] 2025-07-25 20:52:52,614 | INFO     | monitor loop #401: job 0:6745016175 is in state 'finished'
[2025-07-25 16:53:27] 2025-07-25 20:52:52,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 16:53:27] 2025-07-25 20:52:55,103 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-25 16:53:27] 2025-07-25 20:52:55,107 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2581.1622142857136
[2025-07-25 16:53:27] 2025-07-25 20:52:55,115 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745016175/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 16:53:27] 2025-07-25 20:52:55,116 | INFO     | extracted standard info from prmon json
[2025-07-25 16:53:27] 2025-07-25 20:52:55,116 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 16:53:27] 2025-07-25 20:52:55,116 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 16:53:27] 2025-07-25 20:52:55,116 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 16:53:27] 2025-07-25 20:52:55,116 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 16:53:27] 2025-07-25 20:52:55,118 | INFO     | fitting pss+swap vs Time
[2025-07-25 16:53:27] 2025-07-25 20:52:55,119 | INFO     | sum of square deviations: 211293089.0795459
[2025-07-25 16:53:27] 2025-07-25 20:52:55,119 | INFO     | sum of deviations: -3387210312.3522716
[2025-07-25 16:53:27] 2025-07-25 20:52:55,119 | INFO     | mean x: 1753473928.6022727
[2025-07-25 16:53:27] 2025-07-25 20:52:55,119 | INFO     | mean y: 2455387.7613636362
[2025-07-25 16:53:27] 2025-07-25 20:52:55,119 | INFO     | -- intersect: 28112153623.87574
[2025-07-25 16:53:27] 2025-07-25 20:52:55,119 | INFO     | intersect: 28112153623.87574
[2025-07-25 16:53:27] 2025-07-25 20:52:55,119 | INFO     | chi2: 0.189899657041494
[2025-07-25 16:53:27] 2025-07-25 20:52:55,120 | INFO     | monitor loop #402: job 0:6745016175 is in state 'finished'
[2025-07-25 16:53:27] 2025-07-25 20:52:55,120 | INFO     | -- intersect: 28112153623.87574
[2025-07-25 16:53:27] 2025-07-25 20:52:55,120 | INFO     | current memory leak: -16.03 B/s (using 88 data points, chi2=0.19)
[2025-07-25 16:53:27] 2025-07-25 20:52:55,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 16:53:27] 2025-07-25 20:52:55,121 | INFO     | could have reported an average CPU frequency of 2623 MHz (7 samples)
[2025-07-25 16:53:27] 2025-07-25 20:52:55,121 | INFO     | ..............................
[2025-07-25 16:53:27] 2025-07-25 20:52:55,121 | INFO     | . Timing measurements:
[2025-07-25 16:53:27] 2025-07-25 20:52:55,121 | INFO     | . get job = 0 s
[2025-07-25 16:53:27] 2025-07-25 20:52:55,121 | INFO     | . initial setup = 2 s
[2025-07-25 16:53:27] 2025-07-25 20:52:55,121 | INFO     | . payload setup = 5 s
[2025-07-25 16:53:27] 2025-07-25 20:52:55,121 | INFO     | . stage-in = 0 s
[2025-07-25 16:53:27] 2025-07-25 20:52:55,121 | INFO     | . payload execution = 5792 s
[2025-07-25 16:53:27] 2025-07-25 20:52:55,121 | INFO     | . stage-out = 0 s
[2025-07-25 16:53:27] 2025-07-25 20:52:55,121 | INFO     | . log creation = 0 s
[2025-07-25 16:53:27] 2025-07-25 20:52:55,121 | INFO     | ..............................
[2025-07-25 16:53:27] 2025-07-25 20:52:55,571 | INFO     | 
[2025-07-25 16:53:27] 2025-07-25 20:52:55,571 | INFO     | job summary report
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | --------------------------------------------------
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | PanDA job id: 6745016175
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | task id: 45743349
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | errors: (none)
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | pilot state: finished 
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | transexitcode: 0
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | exeerrorcode: 0
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | exeerrordiag: 
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | exitcode: 0
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | exitmsg: OK
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | cpuconsumptiontime: 47796 s
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | nevents: 400
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | neventsw: 0
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | pid: 2770300
[2025-07-25 16:53:27] 2025-07-25 20:52:55,572 | INFO     | pgrp: 2770300
[2025-07-25 16:53:27] 2025-07-25 20:52:55,573 | INFO     | corecount: 12
[2025-07-25 16:53:27] 2025-07-25 20:52:55,573 | INFO     | event service: False
[2025-07-25 16:53:27] 2025-07-25 20:52:55,573 | INFO     | sizes: {0: 2396645, 1: 2397501, 4: 2397763, 12: 2397791, 5802: 2424692, 5803: 2433690, 5805: 2433874, 5815: 2434096}
[2025-07-25 16:53:27] 2025-07-25 20:52:55,573 | INFO     | --------------------------------------------------
[2025-07-25 16:53:27] 2025-07-25 20:52:55,573 | INFO     | 
[2025-07-25 16:53:27] 2025-07-25 20:52:55,573 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 16:53:27] 2025-07-25 20:52:55,602 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,603 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,603 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,603 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,603 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,603 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,603 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,603 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,604 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,604 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,604 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,604 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,604 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,604 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,604 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,604 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,604 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,604 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 16:53:27] 2025-07-25 20:52:55,604 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,604 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 16:53:27] 2025-07-25 20:52:55,605 | INFO     | job 6745016175 has completed (purged errors)
[2025-07-25 16:53:27] 2025-07-25 20:52:55,605 | INFO     | overall cleanup function is called
[2025-07-25 16:53:27] 2025-07-25 20:52:56,613 | INFO     | --- collectZombieJob: --- 10, [2770300]
[2025-07-25 16:53:27] 2025-07-25 20:52:56,613 | INFO     | zombie collector waiting for pid 2770300
[2025-07-25 16:53:27] 2025-07-25 20:52:56,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 16:53:27] 2025-07-25 20:52:56,614 | INFO     | collected zombie processes
[2025-07-25 16:53:27] 2025-07-25 20:52:56,614 | INFO     | will attempt to kill all subprocesses of pid=2770300
[2025-07-25 16:53:27] 2025-07-25 20:52:56,957 | INFO     | process IDs to be killed: [2770300] (in reverse order)
[2025-07-25 16:53:27] 2025-07-25 20:52:57,071 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 16:53:27] 2025-07-25 20:52:57,071 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 16:53:27] 2025-07-25 20:52:57,091 | INFO     | did not find any defunct processes belonging to 2770300
[2025-07-25 16:53:27] 2025-07-25 20:52:57,103 | INFO     | did not find any defunct processes belonging to 2770300
[2025-07-25 16:53:27] 2025-07-25 20:52:57,104 | INFO     | ready for new job
[2025-07-25 16:53:27] 2025-07-25 20:52:57,104 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 16:53:27] 2025-07-25 20:52:57,105 | INFO     | ***************************************
[2025-07-25 16:53:27] 2025-07-25 20:52:57,105 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 16:53:27] 2025-07-25 20:52:57,105 | INFO     | ***************************************
[2025-07-25 16:53:27] 2025-07-25 20:52:57,105 | INFO     | 
[2025-07-25 16:53:27] 2025-07-25 20:52:57,121 | INFO     | architecture information:
[2025-07-25 16:53:27] 2025-07-25 20:52:57,122 | INFO     | executing command: cat /etc/os-release
[2025-07-25 16:53:27] 2025-07-25 20:52:57,150 | INFO     | cat /etc/os-release:
[2025-07-25 16:53:27] NAME="CentOS Linux"
[2025-07-25 16:53:27] VERSION="7 (Core)"
[2025-07-25 16:53:27] ID="centos"
[2025-07-25 16:53:27] ID_LIKE="rhel fedora"
[2025-07-25 16:53:27] VERSION_ID="7"
[2025-07-25 16:53:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 16:53:27] ANSI_COLOR="0;31"
[2025-07-25 16:53:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 16:53:27] HOME_URL="https://www.centos.org/"
[2025-07-25 16:53:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 16:53:27] 
[2025-07-25 16:53:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 16:53:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 16:53:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 16:53:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 16:53:27] 
[2025-07-25 16:53:27] 2025-07-25 20:52:57,151 | INFO     | ***************************************
[2025-07-25 16:53:27] 2025-07-25 20:52:57,654 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 16:53:27] 2025-07-25 20:52:57,682 | INFO     | sufficient remaining disk space (76457967616 B)
[2025-07-25 16:53:27] 2025-07-25 20:52:57,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 16:53:27] 2025-07-25 20:52:57,683 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 16:53:27] 2025-07-25 20:52:57,683 | INFO     | update_server=False
[2025-07-25 16:53:27] 2025-07-25 20:52:57,683 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 16:53:27] 2025-07-25 20:52:57,933 | INFO     | all data control threads have been joined
[2025-07-25 16:53:27] 2025-07-25 20:52:58,487 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 16:53:27] 2025-07-25 20:52:58,575 | INFO     | all job control threads have been joined
[2025-07-25 16:53:27] 2025-07-25 20:52:58,636 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 16:53:27] 2025-07-25 20:52:58,636 | INFO     | aborting loop
[2025-07-25 16:53:27] 2025-07-25 20:52:58,688 | INFO     | [job] retrieve thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:52:58,712 | INFO     | [job] validate thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:52:58,938 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:52:58,938 | INFO     | [data] control thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:52:58,958 | INFO     | [data] copytool_in thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:52:58,994 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:52:59,025 | INFO     | [payload] validate_post thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:52:59,036 | INFO     | all payload control threads have been joined
[2025-07-25 16:53:27] 2025-07-25 20:52:59,220 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:52:59,396 | INFO     | [payload] failed_post thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:52:59,580 | INFO     | [job] control thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:52:59,640 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 16:53:27] 2025-07-25 20:52:59,642 | INFO     | [job] job monitor thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:53:00,041 | INFO     | [payload] control thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:53:00,229 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 16:53:27] 2025-07-25 20:53:00,493 | INFO     | [data] copytool_out thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:53:01,235 | INFO     | [job] queue monitor thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:53:03,646 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:53:07,966 | INFO     | job.realtimelogging is not enabled
[2025-07-25 16:53:27] 2025-07-25 20:53:08,973 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 16:53:27] 2025-07-25 20:53:09,230 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139821482899264)>', '<ExcThread(monitor, started 139820839986944)>']
[2025-07-25 16:53:27] 2025-07-25 20:53:14,256 | INFO     | all workflow threads have been joined
[2025-07-25 16:53:27] 2025-07-25 20:53:14,257 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 16:53:27] 2025-07-25 20:53:14,257 | INFO     | traces error code: 0
[2025-07-25 16:53:27] 2025-07-25 20:53:14,257 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 16:53:27] 2025-07-25 20:53:27,217 | INFO     | PID=2763882 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 16:53:27] 2025-07-25 20:53:27,217 | INFO     | .. there are 14 such processes running
[2025-07-25 16:53:27] 2025-07-25 20:53:27,217 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 16:53:27] 2025-07-25 20:53:27,217 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 16:53:27] 2025-07-25 20:53:27,217 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 16:53:27] 2025-07-25 20:53:27,218 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 16:53:27] 2025-07-25 20:53:27,218 | INFO     | [monitor] control thread has ended
[2025-07-25 16:53:27] 2025-07-25 20:53:27,387 [wrapper] ==== pilot stdout END ====
[2025-07-25 16:53:27] 2025-07-25 20:53:27,390 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 16:53:27] 2025-07-25 20:53:27,393 [wrapper] pilotpid: 2763882
[2025-07-25 16:53:27] 2025-07-25 20:53:27,397 [wrapper] Pilot exit status: 0
[2025-07-25 16:53:27] 2025-07-25 20:53:27,412 [wrapper] pandaids: 6745016175
[2025-07-25 16:53:27] 2025-07-25 20:53:27,486 [wrapper] cleanup supervisor_pilot 2927500 2763883
[2025-07-25 16:53:27] 2025-07-25 20:53:27,491 [wrapper] Test setup, not cleaning
[2025-07-25 16:53:27] 2025-07-25 20:53:27,498 [wrapper] apfmon messages muted
[2025-07-25 16:53:27] 2025-07-25 20:53:27,501 [wrapper] ==== wrapper stdout END ====
[2025-07-25 16:53:27] 2025-07-25 20:53:27,509 [wrapper] ==== wrapper stderr END ====
[2025-07-25 16:53:27]  *** Error codes and diagnostics ***
[2025-07-25 16:53:27]     "exeErrorCode": 0,
[2025-07-25 16:53:27]     "exeErrorDiag": "",
[2025-07-25 16:53:27]     "pilotErrorCode": 0,
[2025-07-25 16:53:27]     "pilotErrorDiag": "",
[2025-07-25 16:53:27]  *** Listing of results directory ***
[2025-07-25 16:53:27] total 344480
[2025-07-25 16:53:27] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 07:25 pilot3.tar.gz
[2025-07-25 16:53:27] -rwx------. 1 boincer umatlas     36292 Jul 25 07:31 runpilot2-wrapper.sh
[2025-07-25 16:53:27] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 07:31 queuedata.json
[2025-07-25 16:53:27] -rw-r--r--. 1 boincer umatlas       100 Jul 25 15:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 16:53:27] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 15:15 run_atlas
[2025-07-25 16:53:27] -rw-r--r--. 1 boincer umatlas       105 Jul 25 15:15 job.xml
[2025-07-25 16:53:27] -rw-r--r--. 2 boincer umatlas 146506679 Jul 25 15:15 EVNT.45743347._001079.pool.root.1
[2025-07-25 16:53:27] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 15:15 start_atlas.sh
[2025-07-25 16:53:27] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 15:15 shared
[2025-07-25 16:53:27] -rw-r--r--. 2 boincer umatlas    542886 Jul 25 15:15 input.tar.gz
[2025-07-25 16:53:27] -rw-r--r--. 1 boincer umatlas         0 Jul 25 15:15 boinc_lockfile
[2025-07-25 16:53:27] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 15:15 pandaJob.out
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas    979993 Jul 25 15:15 agis_schedconf.cvmfs.json
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas   1593052 Jul 25 15:15 agis_ddmendpoints.agis.ALL.json
[2025-07-25 16:53:27] drwx------. 4 boincer umatlas      4096 Jul 25 15:15 pilot3
[2025-07-25 16:53:27] -rw-r--r--. 1 boincer umatlas      6842 Jul 25 16:48 init_data.xml
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas 200525079 Jul 25 16:52 HITS.45743349._020429.pool.root.1
[2025-07-25 16:53:27] -rw-r--r--. 1 boincer umatlas       530 Jul 25 16:52 boinc_task_state.xml
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas        95 Jul 25 16:52 pilot_heartbeat.json
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas      1036 Jul 25 16:52 memory_monitor_summary.json
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas    370495 Jul 25 16:52 log.45743349._020429.job.log.tgz.1
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas      7816 Jul 25 16:52 heartbeat.json
[2025-07-25 16:53:27] -rw-r--r--. 1 boincer umatlas        27 Jul 25 16:53 wrapper_checkpoint.txt
[2025-07-25 16:53:27] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 16:53 boinc_mmap_file
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas       823 Jul 25 16:53 pilotlog.txt
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas    548875 Jul 25 16:53 log.45743349._020429.job.log.1
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas       357 Jul 25 16:53 output.list
[2025-07-25 16:53:27] -rw-r--r--. 1 boincer umatlas       620 Jul 25 16:53 runtime_log
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas    942080 Jul 25 16:53 result.tar.gz
[2025-07-25 16:53:27] -rw-r--r--. 1 boincer umatlas      8667 Jul 25 16:53 runtime_log.err
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas       654 Jul 25 16:53 NIEODmTpVz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKRPLDmNwCuKo.diag
[2025-07-25 16:53:27] -rw-r--r--. 1 boincer umatlas     22513 Jul 25 16:53 stderr.txt
[2025-07-25 16:53:27] HITS file was successfully produced:
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas 200525079 Jul 25 16:52 shared/HITS.pool.root.1
[2025-07-25 16:53:27]  *** Contents of shared directory: ***
[2025-07-25 16:53:27] total 340372
[2025-07-25 16:53:27] -rw-r--r--. 2 boincer umatlas 146506679 Jul 25 15:15 ATLAS.root_0
[2025-07-25 16:53:27] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 15:15 start_atlas.sh
[2025-07-25 16:53:27] -rw-r--r--. 2 boincer umatlas    542886 Jul 25 15:15 input.tar.gz
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas 200525079 Jul 25 16:52 HITS.pool.root.1
[2025-07-25 16:53:27] -rw-------. 1 boincer umatlas    942080 Jul 25 16:53 result.tar.gz
16:53:29 (2760269): run_atlas exited; CPU time 47904.795364
16:53:29 (2760269): called boinc_finish(0)

</stderr_txt>
]]>

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