Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-25 13:17:40 (17660): Detected: vboxwrapper 26206
2025-07-25 13:17:40 (17660): Detected: BOINC client v8.0.2
2025-07-25 13:17:41 (17660): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2025-07-25 13:17:42 (17660): Successfully copied 'init_data.xml' to the shared directory.
2025-07-25 13:17:42 (17660): Create VM. (boinc_08030820da0b82cf, slot#0)
2025-07-25 13:17:43 (17660): Setting Memory Size for VM. (4200MB)
2025-07-25 13:17:43 (17660): Setting CPU Count for VM. (2)
2025-07-25 13:17:43 (17660): Setting Chipset Options for VM.
2025-07-25 13:17:44 (17660): Setting Graphics Controller Options for VM.
2025-07-25 13:17:44 (17660): Setting Boot Options for VM.
2025-07-25 13:17:44 (17660): Setting Network Configuration for NAT.
2025-07-25 13:17:45 (17660): Enabling VM Network Access.
2025-07-25 13:17:45 (17660): Disabling USB Support for VM.
2025-07-25 13:17:45 (17660): Disabling COM Port Support for VM.
2025-07-25 13:17:45 (17660): Disabling LPT Port Support for VM.
2025-07-25 13:17:46 (17660): Disabling Audio Support for VM.
2025-07-25 13:17:46 (17660): Disabling Clipboard Support for VM.
2025-07-25 13:17:46 (17660): Disabling Drag and Drop Support for VM.
2025-07-25 13:17:46 (17660): Adding storage controller(s) to VM.
2025-07-25 13:17:47 (17660): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-25 13:17:50 (17660): Adding VirtualBox Guest Additions to VM.
2025-07-25 13:17:50 (17660): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-25 13:17:50 (17660): forwarding host port 59884 to guest port 80
2025-07-25 13:17:51 (17660): Enabling remote desktop for VM.
2025-07-25 13:17:51 (17660): Enabling shared directory for VM.
2025-07-25 13:17:52 (17660): Starting VM using VBoxManage interface. (boinc_08030820da0b82cf, slot#0)
2025-07-25 13:17:59 (17660): Successfully started VM. (PID = '13588')
2025-07-25 13:17:59 (17660): Reporting VM Process ID to BOINC.
2025-07-25 13:17:59 (17660): Guest Log: BIOS: VirtualBox 7.0.8
2025-07-25 13:17:59 (17660): Guest Log: CPUID EDX: 0x178bfbff
2025-07-25 13:17:59 (17660): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-25 13:17:59 (17660): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-25 13:17:59 (17660): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-25 13:17:59 (17660): Detected: Web Application Enabled (http://localhost:59884)
2025-07-25 13:17:59 (17660): Detected: Remote Desktop Enabled (localhost:59885)
2025-07-25 13:17:59 (17660): Preference change detected
2025-07-25 13:17:59 (17660): Setting CPU throttle for VM. (50%)
2025-07-25 13:18:00 (17660): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-25 13:18:01 (17660): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-25 13:18:01 (17660): Guest Log: BIOS: Booting from Hard Disk...
2025-07-25 13:18:06 (17660): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-25 13:18:06 (17660): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-25 13:18:06 (17660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-25 13:18:17 (17660): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-25 13:18:17 (17660): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-25 13:18:34 (17660): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-25 13:18:34 (17660): Guest Log: 00:00:00.000201 main     Log opened 2025-07-25T13:18:32.502136000Z
2025-07-25 13:18:34 (17660): Guest Log: 00:00:00.000421 main     OS Product: Linux
2025-07-25 13:18:34 (17660): Guest Log: 00:00:00.000484 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-25 13:18:34 (17660): Guest Log: 00:00:00.000559 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-25 13:18:34 (17660): Guest Log: 00:00:00.000643 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-25 13:18:34 (17660): Guest Log: 00:00:00.000645 main     Process ID: 1261
2025-07-25 13:18:34 (17660): Guest Log: 00:00:00.000646 main     Package type: LINUX_64BITS_GENERIC
2025-07-25 13:18:34 (17660): Guest Log: 00:00:00.001877 main     5.2.32 r132073 started. Verbose level = 0
2025-07-25 13:18:35 (17660): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-25 13:18:35 (17660): Guest Log: [INFO] Mounting shared directory
2025-07-25 13:18:35 (17660): Guest Log: [INFO] Checking for init_data.xml
2025-07-25 13:18:44 (17660): Guest Log: 00:00:10.004734 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 412 336 993 000ns (GuestNow=1 753 463 924 842 810 000 ns GuestLast=1 753 449 512 505 817 000 ns fSetTimeLastLoop=true )
2025-07-25 13:19:02 (17660): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-25 13:19:02 (17660): Guest Log: [INFO] Detected branch: prod
2025-07-25 13:19:05 (17660): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-25 13:19:05 (17660): Guest Log: Copying input files
2025-07-25 13:19:06 (17660): Guest Log: Copied input files into RunAtlas.
2025-07-25 13:19:07 (17660): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-25 13:19:07 (17660): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-25 13:19:07 (17660): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-25 13:19:07 (17660): Guest Log: Further information can be found at the LHC@home message board.
2025-07-25 13:19:38 (17660): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-25 13:19:41 (17660): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-25 13:19:41 (17660): Guest Log: 2.6.3.0 1543 0 32104 148748 3 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-25 13:19:42 (17660): Guest Log: copied the webapp to /var/www
2025-07-25 13:19:42 (17660): Guest Log: ATHENA_PROC_NUMBER=2
2025-07-25 13:19:42 (17660): Guest Log: ATHENA_CORE_NUMBER=2
2025-07-25 13:19:44 (17660): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-25 13:19:44 (17660): Guest Log:  *** Starting ATLAS job. (PandaID=6744949656 taskID=45743349) ***
2025-07-25 14:58:04 (17660): Status Report: Elapsed Time: '6000.000000'
2025-07-25 14:58:04 (17660): Status Report: CPU Time: '6272.828125'
2025-07-25 16:38:09 (17660): Status Report: Elapsed Time: '12000.000000'
2025-07-25 16:38:09 (17660): Status Report: CPU Time: '13490.625000'
2025-07-25 18:18:14 (17660): Status Report: Elapsed Time: '18000.000000'
2025-07-25 18:18:14 (17660): Status Report: CPU Time: '20709.000000'
2025-07-25 19:58:19 (17660): Status Report: Elapsed Time: '24000.000000'
2025-07-25 19:58:19 (17660): Status Report: CPU Time: '27927.593750'
2025-07-25 21:38:24 (17660): Status Report: Elapsed Time: '30000.000000'
2025-07-25 21:38:24 (17660): Status Report: CPU Time: '35146.156250'
2025-07-25 23:18:29 (17660): Status Report: Elapsed Time: '36000.000000'
2025-07-25 23:18:29 (17660): Status Report: CPU Time: '42364.359375'
2025-07-26 00:58:34 (17660): Status Report: Elapsed Time: '42000.000000'
2025-07-26 00:58:34 (17660): Status Report: CPU Time: '49583.390625'
2025-07-26 02:38:39 (17660): Status Report: Elapsed Time: '48000.000000'
2025-07-26 02:38:39 (17660): Status Report: CPU Time: '56802.000000'
2025-07-26 04:18:48 (17660): Status Report: Elapsed Time: '54000.000000'
2025-07-26 04:18:48 (17660): Status Report: CPU Time: '64021.625000'
2025-07-26 05:58:53 (17660): Status Report: Elapsed Time: '60000.000000'
2025-07-26 05:58:53 (17660): Status Report: CPU Time: '71239.968750'
2025-07-26 07:38:58 (17660): Status Report: Elapsed Time: '66000.000000'
2025-07-26 07:38:58 (17660): Status Report: CPU Time: '78458.484375'
2025-07-26 09:19:02 (17660): Status Report: Elapsed Time: '72000.000000'
2025-07-26 09:19:02 (17660): Status Report: CPU Time: '85676.484375'
2025-07-26 10:55:48 (17660): Guest Log:  *** Job finished ***
2025-07-26 10:55:48 (17660): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:29,344 | INFO     | end of generic workflow (traces error code: 0)
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:29,344 | INFO     | traces error code: 0
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:29,344 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:39,381 [wrapper] supervise_pilot (15 min periods counter: 87)
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:47,913 | INFO     | PID=5875 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:47,915 | INFO     | found 0 job(s) in 20 queues
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:47,915 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:47,915 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:47,915 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:47,915 | INFO     | [monitor] control thread has ended
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:48,123 [wrapper] ==== pilot stdout END ====
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:48,128 [wrapper] ==== wrapper stdout RESUME ====
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:48,132 [wrapper] pilotpid: 5875
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:48,137 [wrapper] Pilot exit status: 0
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:48,221 [wrapper] pandaids: 6744949656
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:48,257 [wrapper] cleanup supervisor_pilot  1053 5876
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:48,262 [wrapper] Test setup, not cleaning
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:48,266 [wrapper] apfmon messages muted
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:48,271 [wrapper] ==== wrapper stdout END ====
2025-07-26 10:55:48 (17660): Guest Log: 2025-07-26 14:55:48,282 [wrapper] ==== wrapper stderr END ====
2025-07-26 10:55:48 (17660): Guest Log:  *** Error codes and diagnostics ***
2025-07-26 10:55:48 (17660): Guest Log:     "exeErrorCode": 0,
2025-07-26 10:55:48 (17660): Guest Log:     "exeErrorDiag": "",
2025-07-26 10:55:48 (17660): Guest Log:     "pilotErrorCode": 0,
2025-07-26 10:55:48 (17660): Guest Log:     "pilotErrorDiag": "",
2025-07-26 10:55:48 (17660): Guest Log:  *** Listing of results directory ***
2025-07-26 10:55:48 (17660): Guest Log: total 220840
2025-07-26 10:55:48 (17660): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 25 03:17 pilot3.tar.gz
2025-07-26 10:55:48 (17660): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 25 03:30 runpilot2-wrapper.sh
2025-07-26 10:55:48 (17660): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 25 03:30 queuedata.json
2025-07-26 10:55:48 (17660): Guest Log: -rwxr-xr-x. 1 atlas atlas      9026 Jul 25 17:19 init_data.xml
2025-07-26 10:55:48 (17660): Guest Log: -rwxr-xr-x. 1 atlas atlas    542893 Jul 25 17:19 input.tar.gz
2025-07-26 10:55:48 (17660): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 25 17:19 start_atlas.sh
2025-07-26 10:55:48 (17660): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 25 17:19 EVNT.45743347._000856.pool.root.1 -> /data/./ATLAS.root_0
2025-07-26 10:55:48 (17660): Guest Log: -rw-r--r--. 1 atlas atlas      2562 Jul 25 17:19 pandaJob.out
2025-07-26 10:55:48 (17660): Guest Log: -rw-------. 1 atlas atlas    979309 Jul 25 17:21 agis_schedconf.cvmfs.json
2025-07-26 10:55:48 (17660): Guest Log: drwx------. 4 atlas atlas      4096 Jul 25 17:21 pilot3
2025-07-26 10:55:48 (17660): Guest Log: -rw-------. 1 atlas atlas 210244536 Jul 26 14:53 HITS.45743349._015422.pool.root.1
2025-07-26 10:55:48 (17660): Guest Log: -rw-------. 1 atlas atlas      1028 Jul 26 14:54 memory_monitor_summary.json
2025-07-26 10:55:48 (17660): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 26 14:54 agis_ddmendpoints.agis.ALL.json
2025-07-26 10:55:48 (17660): Guest Log: -rw-------. 1 atlas atlas    733055 Jul 26 14:55 log.45743349._015422.job.log.tgz.1
2025-07-26 10:55:48 (17660): Guest Log: -rw-------. 1 atlas atlas      7819 Jul 26 14:55 heartbeat.json
2025-07-26 10:55:48 (17660): Guest Log: -rw-------. 1 atlas atlas        95 Jul 26 14:55 pilot_heartbeat.json
2025-07-26 10:55:48 (17660): Guest Log: -rw-------. 1 atlas atlas       744 Jul 26 14:55 pilotlog.txt
2025-07-26 10:55:48 (17660): Guest Log: -rw-------. 1 atlas atlas   5310004 Jul 26 14:55 log.45743349._015422.job.log.1
2025-07-26 10:55:48 (17660): Guest Log: -rw-------. 1 atlas atlas       357 Jul 26 14:55 output.list
2025-07-26 10:55:48 (17660): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 26 14:55 runtime_log
2025-07-26 10:55:48 (17660): Guest Log: -rw-------. 1 atlas atlas   6062080 Jul 26 14:55 result.tar.gz
2025-07-26 10:55:48 (17660): Guest Log: -rw-------. 1 atlas atlas       668 Jul 26 14:55 s7iLDmmJOz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmgOyKDmhbdRGo.diag
2025-07-26 10:55:48 (17660): Guest Log: -rw-r--r--. 1 atlas atlas      8618 Jul 26 14:55 runtime_log.err
2025-07-26 10:55:48 (17660): Guest Log: Looking for outputfile HITS.45743349._015422.pool.root.1
2025-07-26 10:55:48 (17660): Guest Log: HITS file was successfully produced
2025-07-26 10:55:48 (17660): Guest Log: -rw-------. 1 atlas atlas 210244536 Jul 26 14:53 /home/atlas/RunAtlas/HITS.45743349._015422.pool.root.1
2025-07-26 10:55:51 (17660): Guest Log: Successfully finished the ATLAS job!
2025-07-26 10:55:51 (17660): Guest Log: Copying the results back to the shared directory!
2025-07-26 10:55:51 (17660): Guest Log:  *** Contents of shared directory: ***
2025-07-26 10:55:51 (17660): Guest Log: total 354952
2025-07-26 10:55:51 (17660): Guest Log: -rwxrwxrwx. 1 root root 146585486 Jul 25 17:17 ATLAS.root_0
2025-07-26 10:55:51 (17660): Guest Log: -rwxrwxrwx. 1 root root 210244536 Jul 26 14:55 HITS.pool.root.1
2025-07-26 10:55:51 (17660): Guest Log: -rwxrwxrwx. 1 root root      9026 Jul 25 17:17 init_data.xml
2025-07-26 10:55:51 (17660): Guest Log: -rwxrwxrwx. 1 root root    542893 Jul 25 17:16 input.tar.gz
2025-07-26 10:55:51 (17660): Guest Log: -rwxrwxrwx. 1 root root   6062080 Jul 26 14:55 result.tar.gz
2025-07-26 10:55:51 (17660): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 25 17:16 start_atlas.sh
2025-07-26 10:55:51 (17660): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-26 10:55:51 (17660): VM Completion File Detected.
2025-07-26 10:55:51 (17660): Powering off VM.
2025-07-26 10:55:52 (17660): Successfully stopped VM.
2025-07-26 10:55:52 (17660): Deregistering VM. (boinc_08030820da0b82cf, slot#0)
2025-07-26 10:55:52 (17660): Removing network bandwidth throttle group from VM.
2025-07-26 10:55:53 (17660): Removing VM from VirtualBox.
10:55:58 (17660): called boinc_finish(0)

</stderr_txt>
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