Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:14:55 (493): wrapper (7.7.26015): starting
09:14:55 (493): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 09:14:55] Arguments: --nthreads 8
[2025-07-26 09:14:55] Threads: 8
[2025-07-26 09:14:55] Checking for CVMFS
[2025-07-26 09:14:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 09:14:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 09:14:57] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 09:14:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 09:14:58] 2.11.2.0 26884 107790 140108 148767 0 156 18213572 25165824 4353 130560 0 78294264 99.873 52280755 3331 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-07-26 09:14:58] CVMFS is ok
[2025-07-26 09:14:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 09:14:58] Checking for apptainer binary...
[2025-07-26 09:14:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 09:14:58] Running /usr/bin/apptainer --version
[2025-07-26 09:14:58] apptainer version 1.3.2-1.el7
[2025-07-26 09:14:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 09:14:59] cg-vwn403.simple-grid.lan
[2025-07-26 09:14:59] apptainer works
[2025-07-26 09:14:59] Set ATHENA_PROC_NUMBER=8
[2025-07-26 09:14:59] Set ATHENA_CORE_NUMBER=8
[2025-07-26 09:14:59] Starting ATLAS job with PandaID=6745014859
[2025-07-26 09:14:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 14:26:35]  *** The last 200 lines of the pilot log: ***
[2025-07-26 14:26:35] 2025-07-26 11:43:48,146 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 14:26:35] 2025-07-26 11:43:48,146 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 14:26:35] 2025-07-26 11:43:48,152 | INFO     | fitting pss+swap vs Time
[2025-07-26 14:26:35] 2025-07-26 11:43:48,153 | INFO     | sum of square deviations: 5576683165.5
[2025-07-26 14:26:35] 2025-07-26 11:43:48,155 | INFO     | sum of deviations: -46106956719.50001
[2025-07-26 14:26:35] 2025-07-26 11:43:48,156 | INFO     | mean x: 1753522135.5
[2025-07-26 14:26:35] 2025-07-26 11:43:48,156 | INFO     | mean y: 2525653.7290076334
[2025-07-26 14:26:35] 2025-07-26 11:43:48,156 | INFO     | -- intersect: 14500313462.144844
[2025-07-26 14:26:35] 2025-07-26 11:43:48,156 | INFO     | intersect: 14500313462.144844
[2025-07-26 14:26:35] 2025-07-26 11:43:48,157 | INFO     | chi2: 2.799516704253379
[2025-07-26 14:26:35] 2025-07-26 11:43:48,157 | INFO     | sum of square deviations: 5263458688.0
[2025-07-26 14:26:35] 2025-07-26 11:43:48,160 | INFO     | sum of deviations: -27581598837.999996
[2025-07-26 14:26:35] 2025-07-26 11:43:48,160 | INFO     | mean x: 1753521983.0
[2025-07-26 14:26:35] 2025-07-26 11:43:48,160 | INFO     | mean y: 2534542.4513618676
[2025-07-26 14:26:35] 2025-07-26 11:43:48,160 | INFO     | -- intersect: 9191347974.00465
[2025-07-26 14:26:35] 2025-07-26 11:43:48,160 | INFO     | intersect: 9191347974.00465
[2025-07-26 14:26:35] 2025-07-26 11:43:48,161 | INFO     | chi2: 2.035317214508999
[2025-07-26 14:26:35] 2025-07-26 11:43:48,161 | INFO     | current chi2=2.035317214508999 (change=27.29755063019669 %)
[2025-07-26 14:26:35] 2025-07-26 11:43:48,161 | INFO     | sum of square deviations: 4962187923.0
[2025-07-26 14:26:35] 2025-07-26 11:43:48,164 | INFO     | sum of deviations: -26708224231.50004
[2025-07-26 14:26:35] 2025-07-26 11:43:48,164 | INFO     | mean x: 1753521830.5
[2025-07-26 14:26:35] 2025-07-26 11:43:48,164 | INFO     | mean y: 2534984.5833333335
[2025-07-26 14:26:35] 2025-07-26 11:43:48,164 | INFO     | -- intersect: 9440600404.62696
[2025-07-26 14:26:35] 2025-07-26 11:43:48,164 | INFO     | intersect: 9440600404.62696
[2025-07-26 14:26:35] 2025-07-26 11:43:48,165 | INFO     | chi2: 2.0339743418747767
[2025-07-26 14:26:35] 2025-07-26 11:43:48,165 | INFO     | current chi2=2.0339743418747767 (change=0.06597854254116094 %)
[2025-07-26 14:26:35] 2025-07-26 11:43:48,165 | INFO     | right removable region: 251
[2025-07-26 14:26:35] 2025-07-26 11:43:48,165 | INFO     | sum of square deviations: 5263458688.0
[2025-07-26 14:26:35] 2025-07-26 11:43:48,168 | INFO     | sum of deviations: -94964876616.0
[2025-07-26 14:26:35] 2025-07-26 11:43:48,168 | INFO     | mean x: 1753522288.0
[2025-07-26 14:26:35] 2025-07-26 11:43:48,168 | INFO     | mean y: 2549284.8638132294
[2025-07-26 14:26:35] 2025-07-26 11:43:48,168 | INFO     | -- intersect: 31640116442.553646
[2025-07-26 14:26:35] 2025-07-26 11:43:48,169 | INFO     | intersect: 31640116442.553646
[2025-07-26 14:26:35] 2025-07-26 11:43:48,169 | INFO     | chi2: 1.0479319228343307
[2025-07-26 14:26:35] 2025-07-26 11:43:48,169 | INFO     | current chi2=1.0479319228343307 (change=62.567398821297246 %)
[2025-07-26 14:26:35] 2025-07-26 11:43:48,170 | INFO     | sum of square deviations: 4962187923.0
[2025-07-26 14:26:35] 2025-07-26 11:43:48,172 | INFO     | sum of deviations: -95698799061.5
[2025-07-26 14:26:35] 2025-07-26 11:43:48,172 | INFO     | mean x: 1753522440.5
[2025-07-26 14:26:35] 2025-07-26 11:43:48,172 | INFO     | mean y: 2549630.051587302
[2025-07-26 14:26:35] 2025-07-26 11:43:48,172 | INFO     | -- intersect: 33820291780.73325
[2025-07-26 14:26:35] 2025-07-26 11:43:48,173 | INFO     | intersect: 33820291780.73325
[2025-07-26 14:26:35] 2025-07-26 11:43:48,173 | INFO     | chi2: 1.0202664147409608
[2025-07-26 14:26:35] 2025-07-26 11:43:48,173 | INFO     | current chi2=1.0202664147409608 (change=2.640010051277306 %)
[2025-07-26 14:26:35] 2025-07-26 11:43:48,173 | INFO     | left removable region: 20
[2025-07-26 14:26:35] 2025-07-26 11:43:48,174 | INFO     | sum of square deviations: 3822136780.0
[2025-07-26 14:26:35] 2025-07-26 11:43:48,176 | INFO     | sum of deviations: -61538259058.99999
[2025-07-26 14:26:35] 2025-07-26 11:43:48,176 | INFO     | mean x: 1753522410.0
[2025-07-26 14:26:35] 2025-07-26 11:43:48,176 | INFO     | mean y: 2552699.696969697
[2025-07-26 14:26:35] 2025-07-26 11:43:48,176 | INFO     | -- intersect: 28235115410.95138
[2025-07-26 14:26:35] 2025-07-26 11:43:48,176 | INFO     | intersect: 28235115410.95138
[2025-07-26 14:26:35] 2025-07-26 11:43:48,177 | INFO     | chi2: 0.219485928635748
[2025-07-26 14:26:35] 2025-07-26 11:43:48,177 | INFO     | -- intersect: 28235115410.95138
[2025-07-26 14:26:35] 2025-07-26 11:43:48,177 | INFO     | current memory leak: -16.10 B/s (using 231 data points, chi2=0.22)
[2025-07-26 14:26:35] 2025-07-26 11:43:48,178 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-07-26 14:26:35] 2025-07-26 11:43:48,178 | INFO     | ..............................
[2025-07-26 14:26:35] 2025-07-26 11:43:48,178 | INFO     | . Timing measurements:
[2025-07-26 14:26:35] 2025-07-26 11:43:48,178 | INFO     | . get job = 0 s
[2025-07-26 14:26:35] 2025-07-26 11:43:48,178 | INFO     | . initial setup = 2 s
[2025-07-26 14:26:35] 2025-07-26 11:43:48,178 | INFO     | . payload setup = 14 s
[2025-07-26 14:26:35] 2025-07-26 11:43:48,179 | INFO     | . stage-in = 0 s
[2025-07-26 14:26:35] 2025-07-26 11:43:48,179 | INFO     | . payload execution = 15959 s
[2025-07-26 14:26:35] 2025-07-26 11:43:48,179 | INFO     | . stage-out = 5 s
[2025-07-26 14:26:35] 2025-07-26 11:43:48,179 | INFO     | . log creation = 1 s
[2025-07-26 14:26:35] 2025-07-26 11:43:48,179 | INFO     | ..............................
[2025-07-26 14:26:35] 2025-07-26 11:43:48,516 | INFO     | 
[2025-07-26 14:26:35] 2025-07-26 11:43:48,516 | INFO     | job summary report
[2025-07-26 14:26:35] 2025-07-26 11:43:48,516 | INFO     | --------------------------------------------------
[2025-07-26 14:26:35] 2025-07-26 11:43:48,516 | INFO     | PanDA job id: 6745014859
[2025-07-26 14:26:35] 2025-07-26 11:43:48,516 | INFO     | task id: 45743349
[2025-07-26 14:26:35] 2025-07-26 11:43:48,516 | INFO     | errors: (none)
[2025-07-26 14:26:35] 2025-07-26 11:43:48,516 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 14:26:35] 2025-07-26 11:43:48,516 | INFO     | pilot state: finished 
[2025-07-26 14:26:35] 2025-07-26 11:43:48,517 | INFO     | transexitcode: 0
[2025-07-26 14:26:35] 2025-07-26 11:43:48,517 | INFO     | exeerrorcode: 0
[2025-07-26 14:26:35] 2025-07-26 11:43:48,517 | INFO     | exeerrordiag: 
[2025-07-26 14:26:35] 2025-07-26 11:43:48,517 | INFO     | exitcode: 0
[2025-07-26 14:26:35] 2025-07-26 11:43:48,517 | INFO     | exitmsg: OK
[2025-07-26 14:26:35] 2025-07-26 11:43:48,517 | INFO     | cpuconsumptiontime: 61647 s
[2025-07-26 14:26:35] 2025-07-26 11:43:48,517 | INFO     | nevents: 400
[2025-07-26 14:26:35] 2025-07-26 11:43:48,517 | INFO     | neventsw: 0
[2025-07-26 14:26:35] 2025-07-26 11:43:48,517 | INFO     | pid: 11136
[2025-07-26 14:26:35] 2025-07-26 11:43:48,517 | INFO     | pgrp: 11136
[2025-07-26 14:26:35] 2025-07-26 11:43:48,517 | INFO     | corecount: 8
[2025-07-26 14:26:35] 2025-07-26 11:43:48,517 | INFO     | event service: False
[2025-07-26 14:26:35] 2025-07-26 11:43:48,517 | INFO     | sizes: {0: 2397302, 1: 2397501, 10: 2397763, 12: 2397791, 15977: 2428823, 15983: 2437821, 15985: 2438005, 16087: 2438199}
[2025-07-26 14:26:35] 2025-07-26 11:43:48,518 | INFO     | --------------------------------------------------
[2025-07-26 14:26:35] 2025-07-26 11:43:48,518 | INFO     | 
[2025-07-26 14:26:35] 2025-07-26 11:43:48,518 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-07-26 14:26:35] 2025-07-26 11:43:49,075 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,076 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,076 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,076 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,076 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,076 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,076 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,076 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,076 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,076 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,076 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,076 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,076 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,077 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,077 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,077 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,077 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,077 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 14:26:35] 2025-07-26 11:43:49,077 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,077 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 14:26:35] 2025-07-26 11:43:49,077 | INFO     | job 6745014859 has completed (purged errors)
[2025-07-26 14:26:35] 2025-07-26 11:43:49,077 | INFO     | overall cleanup function is called
[2025-07-26 14:26:35] 2025-07-26 11:43:50,086 | INFO     | --- collectZombieJob: --- 10, [11136]
[2025-07-26 14:26:35] 2025-07-26 11:43:50,086 | INFO     | zombie collector waiting for pid 11136
[2025-07-26 14:26:35] 2025-07-26 11:43:50,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 14:26:35] 2025-07-26 11:43:50,086 | INFO     | collected zombie processes
[2025-07-26 14:26:35] 2025-07-26 11:43:50,086 | INFO     | will attempt to kill all subprocesses of pid=11136
[2025-07-26 14:26:35] 2025-07-26 11:43:50,194 | INFO     | process IDs to be killed: [11136] (in reverse order)
[2025-07-26 14:26:35] 2025-07-26 11:43:50,691 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 14:26:35] 2025-07-26 11:43:50,692 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 14:26:35] 2025-07-26 11:43:50,695 | INFO     | did not find any defunct processes belonging to 11136
[2025-07-26 14:26:35] 2025-07-26 11:43:50,698 | INFO     | did not find any defunct processes belonging to 11136
[2025-07-26 14:26:35] 2025-07-26 11:43:50,699 | INFO     | ready for new job
[2025-07-26 14:26:35] 2025-07-26 11:43:50,699 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 14:26:35] 2025-07-26 11:43:50,701 | INFO     | ***************************************
[2025-07-26 14:26:35] 2025-07-26 11:43:50,701 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 14:26:35] 2025-07-26 11:43:50,701 | INFO     | ***************************************
[2025-07-26 14:26:35] 2025-07-26 11:43:50,701 | INFO     | 
[2025-07-26 14:26:35] 2025-07-26 11:43:50,702 | INFO     | pilot is running in a VM
[2025-07-26 14:26:35] 2025-07-26 11:43:50,702 | INFO     | architecture information:
[2025-07-26 14:26:35] 2025-07-26 11:43:50,708 | INFO     | executing command: cat /etc/os-release
[2025-07-26 14:26:35] 2025-07-26 11:43:50,925 | INFO     | cat /etc/os-release:
[2025-07-26 14:26:35] NAME="CentOS Linux"
[2025-07-26 14:26:35] VERSION="7 (Core)"
[2025-07-26 14:26:35] ID="centos"
[2025-07-26 14:26:35] ID_LIKE="rhel fedora"
[2025-07-26 14:26:35] VERSION_ID="7"
[2025-07-26 14:26:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 14:26:35] ANSI_COLOR="0;31"
[2025-07-26 14:26:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 14:26:35] HOME_URL="https://www.centos.org/"
[2025-07-26 14:26:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 14:26:35] 
[2025-07-26 14:26:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 14:26:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 14:26:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 14:26:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 14:26:35] 
[2025-07-26 14:26:35] 2025-07-26 11:43:50,926 | INFO     | ***************************************
[2025-07-26 14:26:35] 2025-07-26 11:43:51,428 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-07-26 14:26:35] 2025-07-26 11:43:51,668 | INFO     | sufficient remaining disk space (495948136448 B)
[2025-07-26 14:26:35] 2025-07-26 11:43:51,668 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 14:26:35] 2025-07-26 11:43:51,668 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 14:26:35] 2025-07-26 11:43:51,668 | INFO     | update_server=False
[2025-07-26 14:26:35] 2025-07-26 11:43:51,668 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 14:26:35] 2025-07-26 11:43:51,669 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 14:26:35] 2025-07-26 11:43:51,672 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 14:26:35] 2025-07-26 11:43:51,672 | INFO     | aborting loop
[2025-07-26 14:26:35] 2025-07-26 11:43:51,918 | INFO     | all data control threads have been joined
[2025-07-26 14:26:35] 2025-07-26 11:43:52,036 | INFO     | all job control threads have been joined
[2025-07-26 14:26:35] 2025-07-26 11:43:52,044 | INFO     | all payload control threads have been joined
[2025-07-26 14:26:35] 2025-07-26 11:43:52,325 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 14:26:35] 2025-07-26 11:43:52,675 | INFO     | [job] retrieve thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:52,678 | INFO     | [job] job monitor thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:52,744 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:52,924 | INFO     | [data] control thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:53,042 | INFO     | [job] control thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:53,050 | INFO     | [payload] control thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:53,322 | INFO     | [job] validate thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:53,330 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 14:26:35] 2025-07-26 11:43:53,668 | INFO     | [data] copytool_in thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:53,756 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:53,773 | INFO     | [payload] failed_post thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:53,796 | INFO     | [payload] validate_post thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:53,810 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:53,865 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:54,334 | INFO     | [data] copytool_out thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:54,338 | INFO     | [job] queue monitor thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:55,678 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 14:26:35] 2025-07-26 11:43:56,816 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139967942104896)>', '<ExcThread(monitor, started 139967640610560)>']
[2025-07-26 14:26:35] 2025-07-26 11:44:01,842 | INFO     | all workflow threads have been joined
[2025-07-26 14:26:35] 2025-07-26 11:44:01,842 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 14:26:35] 2025-07-26 11:44:01,842 | INFO     | traces error code: 0
[2025-07-26 14:26:35] 2025-07-26 11:44:01,843 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 14:26:35] 2025-07-26 11:44:20,880 | INFO     | PID=4572 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-26 14:26:35] 2025-07-26 11:44:20,880 | INFO     | .. there are 9 such processes running
[2025-07-26 14:26:35] 2025-07-26 11:44:20,881 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 14:26:35] 2025-07-26 11:44:20,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 14:26:35] 2025-07-26 11:44:20,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 14:26:35] 2025-07-26 11:44:20,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 14:26:35] 2025-07-26 11:44:20,881 | CRITICAL | thread 'MainThread' is not alive
[2025-07-26 14:26:35] 2025-07-26 11:44:20,881 | INFO     | [monitor] control thread has ended
[2025-07-26 14:26:35] 2025-07-26 11:44:21,175 [wrapper] ==== pilot stdout END ====
[2025-07-26 14:26:35] 2025-07-26 11:44:21,218 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 14:26:35] 2025-07-26 11:44:21,258 [wrapper] pilotpid: 4572
[2025-07-26 14:26:35] 2025-07-26 11:44:21,301 [wrapper] Pilot exit status: 0
[2025-07-26 14:26:35] 2025-07-26 11:44:21,700 [wrapper] pandaids: 6745014859
[2025-07-26 14:26:35] 2025-07-26 11:44:22,152 [wrapper] cleanup supervisor_pilot 20929 4573
[2025-07-26 14:26:35] 2025-07-26 11:44:22,171 [wrapper] Test setup, not cleaning
[2025-07-26 14:26:35] 2025-07-26 11:44:22,269 [wrapper] apfmon messages muted
[2025-07-26 14:26:35] 2025-07-26 11:44:22,343 [wrapper] ==== wrapper stdout END ====
[2025-07-26 14:26:35] 2025-07-26 11:44:22,411 [wrapper] ==== wrapper stderr END ====
[2025-07-26 14:26:35]  *** Error codes and diagnostics ***
[2025-07-26 14:26:35]     "exeErrorCode": 0,
[2025-07-26 14:26:35]     "exeErrorDiag": "",
[2025-07-26 14:26:35]     "pilotErrorCode": 0,
[2025-07-26 14:26:35]     "pilotErrorDiag": "",
[2025-07-26 14:26:35]  *** Listing of results directory ***
[2025-07-26 14:26:35] total 353916
[2025-07-26 14:26:35] -rw-r--r--. 1 boinc boinc    530466 Jul 25 12:45 pilot3.tar.gz
[2025-07-26 14:26:35] -rw-r--r--. 1 boinc boinc      5112 Jul 25 12:48 queuedata.json
[2025-07-26 14:26:35] -rwx------. 1 boinc boinc     36292 Jul 25 12:48 runpilot2-wrapper.sh
[2025-07-26 14:26:35] -rw-r--r--. 1 boinc boinc       100 Jul 26 09:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 14:26:35] -rwxr-xr-x. 1 boinc boinc      7986 Jul 26 09:14 run_atlas
[2025-07-26 14:26:35] -rw-r--r--. 1 boinc boinc       105 Jul 26 09:14 job.xml
[2025-07-26 14:26:35] -rw-r--r--. 1 boinc boinc      6392 Jul 26 09:14 init_data.xml
[2025-07-26 14:26:35] -rw-r--r--. 2 boinc boinc 147009186 Jul 26 09:14 EVNT.45743347._001051.pool.root.1
[2025-07-26 14:26:35] -rw-r--r--. 2 boinc boinc     15095 Jul 26 09:14 start_atlas.sh
[2025-07-26 14:26:35] drwxrwx--x. 2 boinc boinc        68 Jul 26 09:14 shared
[2025-07-26 14:26:35] -rw-r--r--. 2 boinc boinc    542887 Jul 26 09:14 input.tar.gz
[2025-07-26 14:26:35] -rw-r--r--. 1 boinc boinc         0 Jul 26 09:14 boinc_lockfile
[2025-07-26 14:26:35] -rw-r--r--. 1 boinc boinc      2562 Jul 26 09:14 pandaJob.out
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc    980001 Jul 26 09:15 agis_schedconf.cvmfs.json
[2025-07-26 14:26:35] drwx------. 4 boinc boinc      4096 Jul 26 09:15 pilot3
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc 207974378 Jul 26 13:40 HITS.45743349._020006.pool.root.1
[2025-07-26 14:26:35] -rw-r--r--. 1 boinc boinc       531 Jul 26 13:40 boinc_task_state.xml
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc      1018 Jul 26 13:41 memory_monitor_summary.json
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc   1593052 Jul 26 13:42 agis_ddmendpoints.agis.ALL.json
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc    402720 Jul 26 13:42 log.45743349._020006.job.log.tgz.1
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc        95 Jul 26 13:43 pilot_heartbeat.json
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc      7785 Jul 26 13:43 heartbeat.json
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc       889 Jul 26 13:44 pilotlog.txt
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc   1381250 Jul 26 13:44 log.45743349._020006.job.log.1
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc       357 Jul 26 13:44 output.list
[2025-07-26 14:26:35] -rw-r--r--. 1 boinc boinc       620 Jul 26 13:44 runtime_log
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc   1802240 Jul 26 13:44 result.tar.gz
[2025-07-26 14:26:35] -rw-r--r--. 1 boinc boinc      8660 Jul 26 13:44 runtime_log.err
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc       657 Jul 26 13:44 lRYLDmQ9Uz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmmqyKDmgENKam.diag
[2025-07-26 14:26:35] -rw-r--r--. 1 boinc boinc      8192 Jul 26 14:26 boinc_mmap_file
[2025-07-26 14:26:35] -rw-r--r--. 1 boinc boinc        28 Jul 26 14:26 wrapper_checkpoint.txt
[2025-07-26 14:26:35] -rw-r--r--. 1 boinc boinc     20554 Jul 26 14:26 stderr.txt
[2025-07-26 14:26:35] HITS file was successfully produced:
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc 207974378 Jul 26 13:40 shared/HITS.pool.root.1
[2025-07-26 14:26:35]  *** Contents of shared directory: ***
[2025-07-26 14:26:35] total 348972
[2025-07-26 14:26:35] -rw-r--r--. 2 boinc boinc 147009186 Jul 26 09:14 ATLAS.root_0
[2025-07-26 14:26:35] -rw-r--r--. 2 boinc boinc     15095 Jul 26 09:14 start_atlas.sh
[2025-07-26 14:26:35] -rw-r--r--. 2 boinc boinc    542887 Jul 26 09:14 input.tar.gz
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc 207974378 Jul 26 13:40 HITS.pool.root.1
[2025-07-26 14:26:35] -rw-------. 1 boinc boinc   1802240 Jul 26 13:44 result.tar.gz
14:26:37 (493): run_atlas exited; CPU time 61854.033250
14:26:37 (493): called boinc_finish(0)

</stderr_txt>
]]>

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