Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:51:36 (2606966): wrapper (7.7.26015): starting
13:51:36 (2606966): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 13:51:36] Arguments: --nthreads 12
[2025-07-25 13:51:36] Threads: 12
[2025-07-25 13:51:36] Checking for CVMFS
[2025-07-25 13:51:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 13:51:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 13:51:36] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 13:51:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 13:51:36] 2.12.6.0 1267368 15804 337840 148748 0 454 19901165 32935937 11596 16776704 0 29915216 99.697 59179512 30333 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 13:51:36] CVMFS is ok
[2025-07-25 13:51:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 13:51:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 13:51:36] Further information can be found at the LHC@home message board.
[2025-07-25 13:51:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 13:51:36] Checking for apptainer binary...
[2025-07-25 13:51:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 13:51:36] Running /usr/bin/apptainer --version
[2025-07-25 13:51:36] apptainer version 1.4.1-1.el9
[2025-07-25 13:51:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 13:51:37] c6-2-29-3.aglt2.org
[2025-07-25 13:51:37] apptainer works
[2025-07-25 13:51:37] Set ATHENA_PROC_NUMBER=12
[2025-07-25 13:51:37] Set ATHENA_CORE_NUMBER=12
[2025-07-25 13:51:37] Starting ATLAS job with PandaID=6744980216
[2025-07-25 13:51:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 15:15:13]  *** The last 200 lines of the pilot log: ***
[2025-07-25 15:15:13]  guid=8a81353b-44f1-46bb-9e0c-3f7a8e116c1d
[2025-07-25 15:15:13]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-25 15:15:13]  is_altstaged=None
[2025-07-25 15:15:13]  is_tar=False
[2025-07-25 15:15:13]  lfn=log.45743349._019653.job.log.tgz.1
[2025-07-25 15:15:13]  mtime=0
[2025-07-25 15:15:13]  protocol_id=None
[2025-07-25 15:15:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-25 15:15:13]  replicas=None
[2025-07-25 15:15:13]  scope=mc23_13p6TeV
[2025-07-25 15:15:13]  status=None
[2025-07-25 15:15:13]  status_code=0
[2025-07-25 15:15:13]  storage_token=
[2025-07-25 15:15:13]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6744980216/log.45743349._019653.job.log.tgz.1
[2025-07-25 15:15:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/81/log.45743349._019653.job.log.tgz.1
[2025-07-25 15:15:13]  workdir=None
[2025-07-25 15:15:13] ]
[2025-07-25 15:15:13] 2025-07-25 19:14:36,149 | INFO     | transferring file log.45743349._019653.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6744980216/log.45743349._019653.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-25 15:15:13] 2025-07-25 19:14:36,150 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6744980216/log.45743349._019653.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._019653.job
[2025-07-25 15:15:13] 2025-07-25 19:14:36,167 | INFO     | adding to output.list: log.45743349._019653.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/81/log.45743349._019653.job.log.tg
[2025-07-25 15:15:13] 2025-07-25 19:14:36,168 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 15:15:13] 2025-07-25 19:14:36,168 | INFO     | summary of transferred files:
[2025-07-25 15:15:13] 2025-07-25 19:14:36,168 | INFO     |  -- lfn=log.45743349._019653.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 15:15:13] 2025-07-25 19:14:36,168 | INFO     | stage-out finished correctly
[2025-07-25 15:15:13] 2025-07-25 19:14:36,242 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 15:15:13] 2025-07-25 19:14:36,542 | INFO     | job 6744980216 has state=finished
[2025-07-25 15:15:13] 2025-07-25 19:14:36,543 | INFO     | preparing for final server update for job 6744980216 in state='finished'
[2025-07-25 15:15:13] 2025-07-25 19:14:36,543 | INFO     | this job has now completed (state=finished)
[2025-07-25 15:15:13] 2025-07-25 19:14:36,543 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 15:15:13] 2025-07-25 19:14:36,544 | INFO     | log transfer has been attempted: DONE
[2025-07-25 15:15:13] 2025-07-25 19:14:36,544 | INFO     | job 6744980216 has finished - writing final server update
[2025-07-25 15:15:13] 2025-07-25 19:14:36,544 | INFO     | total number of processed events: 400 (read)
[2025-07-25 15:15:13] 2025-07-25 19:14:36,545 | INFO     | executing command: lscpu
[2025-07-25 15:15:13] 2025-07-25 19:14:36,602 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 15:15:13] 2025-07-25 19:14:38,035 | INFO     | monitor loop #357: job 0:6744980216 is in state 'finished'
[2025-07-25 15:15:13] 2025-07-25 19:14:38,035 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 15:15:13] 2025-07-25 19:14:39,935 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-25 15:15:13] 2025-07-25 19:14:39,939 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2694.1084464285714
[2025-07-25 15:15:13] 2025-07-25 19:14:39,948 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744980216/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 15:15:13] 2025-07-25 19:14:39,949 | INFO     | extracted standard info from prmon json
[2025-07-25 15:15:13] 2025-07-25 19:14:39,949 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 15:15:13] 2025-07-25 19:14:39,949 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 15:15:13] 2025-07-25 19:14:39,949 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 15:15:13] 2025-07-25 19:14:39,949 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 15:15:13] 2025-07-25 19:14:39,951 | INFO     | fitting pss+swap vs Time
[2025-07-25 15:15:13] 2025-07-25 19:14:39,951 | INFO     | sum of square deviations: 125598437.90540545
[2025-07-25 15:15:13] 2025-07-25 19:14:39,952 | INFO     | sum of deviations: -4038670224.986487
[2025-07-25 15:15:13] 2025-07-25 19:14:39,952 | INFO     | mean x: 1753468468.8783784
[2025-07-25 15:15:13] 2025-07-25 19:14:39,952 | INFO     | mean y: 2462379.445945946
[2025-07-25 15:15:13] 2025-07-25 19:14:39,952 | INFO     | -- intersect: 56385973303.72451
[2025-07-25 15:15:13] 2025-07-25 19:14:39,952 | INFO     | intersect: 56385973303.72451
[2025-07-25 15:15:13] 2025-07-25 19:14:39,952 | INFO     | chi2: 0.12404335919757481
[2025-07-25 15:15:13] 2025-07-25 19:14:39,952 | INFO     | -- intersect: 56385973303.72451
[2025-07-25 15:15:13] 2025-07-25 19:14:39,952 | INFO     | current memory leak: -32.16 B/s (using 74 data points, chi2=0.12)
[2025-07-25 15:15:13] 2025-07-25 19:14:39,953 | INFO     | could have reported an average CPU frequency of 2717 MHz (6 samples)
[2025-07-25 15:15:13] 2025-07-25 19:14:39,953 | INFO     | ..............................
[2025-07-25 15:15:13] 2025-07-25 19:14:39,953 | INFO     | . Timing measurements:
[2025-07-25 15:15:13] 2025-07-25 19:14:39,953 | INFO     | . get job = 0 s
[2025-07-25 15:15:13] 2025-07-25 19:14:39,953 | INFO     | . initial setup = 2 s
[2025-07-25 15:15:13] 2025-07-25 19:14:39,953 | INFO     | . payload setup = 7 s
[2025-07-25 15:15:13] 2025-07-25 19:14:39,953 | INFO     | . stage-in = 0 s
[2025-07-25 15:15:13] 2025-07-25 19:14:39,953 | INFO     | . payload execution = 4940 s
[2025-07-25 15:15:13] 2025-07-25 19:14:39,953 | INFO     | . stage-out = 0 s
[2025-07-25 15:15:13] 2025-07-25 19:14:39,953 | INFO     | . log creation = 0 s
[2025-07-25 15:15:13] 2025-07-25 19:14:39,953 | INFO     | ..............................
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | 
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | job summary report
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | --------------------------------------------------
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | PanDA job id: 6744980216
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | task id: 45743349
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | errors: (none)
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | pilot state: finished 
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | transexitcode: 0
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | exeerrorcode: 0
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | exeerrordiag: 
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | exitcode: 0
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | exitmsg: OK
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | cpuconsumptiontime: 45980 s
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | nevents: 400
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | neventsw: 0
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | pid: 2617630
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | pgrp: 2617630
[2025-07-25 15:15:13] 2025-07-25 19:14:40,022 | INFO     | corecount: 12
[2025-07-25 15:15:13] 2025-07-25 19:14:40,023 | INFO     | event service: False
[2025-07-25 15:15:13] 2025-07-25 19:14:40,023 | INFO     | sizes: {0: 2397473, 5: 2397735, 11: 2397791, 4951: 2424181, 4952: 2433234, 4956: 2433372}
[2025-07-25 15:15:13] 2025-07-25 19:14:40,023 | INFO     | --------------------------------------------------
[2025-07-25 15:15:13] 2025-07-25 19:14:40,023 | INFO     | 
[2025-07-25 15:15:13] 2025-07-25 19:14:40,023 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 15:15:13] 2025-07-25 19:14:40,039 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,040 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,040 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,040 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,040 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,040 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,040 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,040 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,040 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,041 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,041 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,041 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,041 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,041 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,041 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,041 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,041 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,041 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 15:15:13] 2025-07-25 19:14:40,041 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,041 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 15:15:13] 2025-07-25 19:14:40,042 | INFO     | job 6744980216 has completed (purged errors)
[2025-07-25 15:15:13] 2025-07-25 19:14:40,042 | INFO     | overall cleanup function is called
[2025-07-25 15:15:13] 2025-07-25 19:14:41,049 | INFO     | --- collectZombieJob: --- 10, [2617630]
[2025-07-25 15:15:13] 2025-07-25 19:14:41,049 | INFO     | zombie collector waiting for pid 2617630
[2025-07-25 15:15:13] 2025-07-25 19:14:41,049 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 15:15:13] 2025-07-25 19:14:41,049 | INFO     | collected zombie processes
[2025-07-25 15:15:13] 2025-07-25 19:14:41,050 | INFO     | will attempt to kill all subprocesses of pid=2617630
[2025-07-25 15:15:13] 2025-07-25 19:14:41,274 | INFO     | process IDs to be killed: [2617630] (in reverse order)
[2025-07-25 15:15:13] 2025-07-25 19:14:41,354 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 15:15:13] 2025-07-25 19:14:41,355 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 15:15:13] 2025-07-25 19:14:41,364 | INFO     | did not find any defunct processes belonging to 2617630
[2025-07-25 15:15:13] 2025-07-25 19:14:41,372 | INFO     | did not find any defunct processes belonging to 2617630
[2025-07-25 15:15:13] 2025-07-25 19:14:41,373 | INFO     | ready for new job
[2025-07-25 15:15:13] 2025-07-25 19:14:41,373 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 15:15:13] 2025-07-25 19:14:41,374 | INFO     | ***************************************
[2025-07-25 15:15:13] 2025-07-25 19:14:41,374 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 15:15:13] 2025-07-25 19:14:41,374 | INFO     | ***************************************
[2025-07-25 15:15:13] 2025-07-25 19:14:41,374 | INFO     | 
[2025-07-25 15:15:13] 2025-07-25 19:14:41,390 | INFO     | architecture information:
[2025-07-25 15:15:13] 2025-07-25 19:14:41,390 | INFO     | executing command: cat /etc/os-release
[2025-07-25 15:15:13] 2025-07-25 19:14:41,402 | INFO     | cat /etc/os-release:
[2025-07-25 15:15:13] NAME="CentOS Linux"
[2025-07-25 15:15:13] VERSION="7 (Core)"
[2025-07-25 15:15:13] ID="centos"
[2025-07-25 15:15:13] ID_LIKE="rhel fedora"
[2025-07-25 15:15:13] VERSION_ID="7"
[2025-07-25 15:15:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 15:15:13] ANSI_COLOR="0;31"
[2025-07-25 15:15:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 15:15:13] HOME_URL="https://www.centos.org/"
[2025-07-25 15:15:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 15:15:13] 
[2025-07-25 15:15:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 15:15:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 15:15:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 15:15:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 15:15:13] 
[2025-07-25 15:15:13] 2025-07-25 19:14:41,402 | INFO     | ***************************************
[2025-07-25 15:15:13] 2025-07-25 19:14:41,905 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 15:15:13] 2025-07-25 19:14:41,921 | INFO     | sufficient remaining disk space (76530319360 B)
[2025-07-25 15:15:13] 2025-07-25 19:14:41,921 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 15:15:13] 2025-07-25 19:14:41,921 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 15:15:13] 2025-07-25 19:14:41,921 | INFO     | update_server=False
[2025-07-25 15:15:13] 2025-07-25 19:14:41,922 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 15:15:13] 2025-07-25 19:14:41,922 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 15:15:13] 2025-07-25 19:14:41,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 15:15:13] 2025-07-25 19:14:41,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 15:15:13] 2025-07-25 19:14:41,922 | INFO     | aborting loop
[2025-07-25 15:15:13] 2025-07-25 19:14:42,311 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 15:15:13] 2025-07-25 19:14:42,869 | INFO     | all payload control threads have been joined
[2025-07-25 15:15:13] 2025-07-25 19:14:42,926 | INFO     | [job] retrieve thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:42,927 | INFO     | [job] queue monitor thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:42,927 | INFO     | [job] job monitor thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:42,964 | INFO     | all data control threads have been joined
[2025-07-25 15:15:13] 2025-07-25 19:14:43,248 | INFO     | all job control threads have been joined
[2025-07-25 15:15:13] 2025-07-25 19:14:43,542 | INFO     | [payload] failed_post thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:43,563 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:43,626 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:43,874 | INFO     | [payload] control thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:43,881 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:43,927 | INFO     | [data] copytool_out thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:43,969 | INFO     | [data] control thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:44,190 | INFO     | [job] validate thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:44,201 | INFO     | [data] copytool_in thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:44,253 | INFO     | [job] control thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:44,498 | INFO     | [payload] validate_post thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:46,317 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:52,892 | INFO     | job.realtimelogging is not enabled
[2025-07-25 15:15:13] 2025-07-25 19:14:53,897 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 15:15:13] 2025-07-25 19:14:54,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140289815959360)>', '<ExcThread(monitor, started 140289184356096)>']
[2025-07-25 15:15:13] 2025-07-25 19:14:59,843 | INFO     | all workflow threads have been joined
[2025-07-25 15:15:13] 2025-07-25 19:14:59,843 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 15:15:13] 2025-07-25 19:14:59,843 | INFO     | traces error code: 0
[2025-07-25 15:15:13] 2025-07-25 19:14:59,844 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 15:15:13] 2025-07-25 19:15:12,841 | INFO     | PID=2610544 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 15:15:13] 2025-07-25 19:15:12,842 | INFO     | .. there are 15 such processes running
[2025-07-25 15:15:13] 2025-07-25 19:15:12,842 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 15:15:13] 2025-07-25 19:15:12,842 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 15:15:13] 2025-07-25 19:15:12,842 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 15:15:13] 2025-07-25 19:15:12,842 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 15:15:13] 2025-07-25 19:15:12,842 | INFO     | [monitor] control thread has ended
[2025-07-25 15:15:13] 2025-07-25 19:15:12,969 [wrapper] ==== pilot stdout END ====
[2025-07-25 15:15:13] 2025-07-25 19:15:12,972 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 15:15:13] 2025-07-25 19:15:12,974 [wrapper] pilotpid: 2610544
[2025-07-25 15:15:13] 2025-07-25 19:15:12,977 [wrapper] Pilot exit status: 0
[2025-07-25 15:15:13] 2025-07-25 19:15:12,987 [wrapper] pandaids: 6744980216
[2025-07-25 15:15:13] 2025-07-25 19:15:13,034 [wrapper] cleanup supervisor_pilot 2748186 2610545
[2025-07-25 15:15:13] 2025-07-25 19:15:13,037 [wrapper] Test setup, not cleaning
[2025-07-25 15:15:13] 2025-07-25 19:15:13,040 [wrapper] apfmon messages muted
[2025-07-25 15:15:13] 2025-07-25 19:15:13,043 [wrapper] ==== wrapper stdout END ====
[2025-07-25 15:15:13] 2025-07-25 19:15:13,045 [wrapper] ==== wrapper stderr END ====
[2025-07-25 15:15:13]  *** Error codes and diagnostics ***
[2025-07-25 15:15:13]     "exeErrorCode": 0,
[2025-07-25 15:15:13]     "exeErrorDiag": "",
[2025-07-25 15:15:13]     "pilotErrorCode": 0,
[2025-07-25 15:15:13]     "pilotErrorDiag": "",
[2025-07-25 15:15:13]  *** Listing of results directory ***
[2025-07-25 15:15:13] total 354584
[2025-07-25 15:15:13] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 05:47 pilot3.tar.gz
[2025-07-25 15:15:13] -rwx------. 1 boincer umatlas     36292 Jul 25 06:14 runpilot2-wrapper.sh
[2025-07-25 15:15:13] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 06:14 queuedata.json
[2025-07-25 15:15:13] -rw-r--r--. 1 boincer umatlas       100 Jul 25 13:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 15:15:13] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 13:51 run_atlas
[2025-07-25 15:15:13] -rw-r--r--. 1 boincer umatlas       105 Jul 25 13:51 job.xml
[2025-07-25 15:15:13] -rw-r--r--. 2 boincer umatlas 149653554 Jul 25 13:51 EVNT.45743347._001028.pool.root.1
[2025-07-25 15:15:13] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 13:51 start_atlas.sh
[2025-07-25 15:15:13] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 13:51 shared
[2025-07-25 15:15:13] -rw-r--r--. 2 boincer umatlas    542887 Jul 25 13:51 input.tar.gz
[2025-07-25 15:15:13] -rw-r--r--. 1 boincer umatlas         0 Jul 25 13:51 boinc_lockfile
[2025-07-25 15:15:13] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 13:51 pandaJob.out
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas    979309 Jul 25 13:51 agis_schedconf.cvmfs.json
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas   1593052 Jul 25 13:51 agis_ddmendpoints.agis.ALL.json
[2025-07-25 15:15:13] drwx------. 4 boincer umatlas      4096 Jul 25 13:51 pilot3
[2025-07-25 15:15:13] -rw-r--r--. 1 boincer umatlas      6842 Jul 25 15:12 init_data.xml
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas 207880286 Jul 25 15:14 HITS.45743349._019653.pool.root.1
[2025-07-25 15:15:13] -rw-r--r--. 1 boincer umatlas       529 Jul 25 15:14 boinc_task_state.xml
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas        95 Jul 25 15:14 pilot_heartbeat.json
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas      1037 Jul 25 15:14 memory_monitor_summary.json
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas    363602 Jul 25 15:14 log.45743349._019653.job.log.tgz.1
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas      7816 Jul 25 15:14 heartbeat.json
[2025-07-25 15:15:13] -rw-r--r--. 1 boincer umatlas        27 Jul 25 15:14 wrapper_checkpoint.txt
[2025-07-25 15:15:13] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 15:14 boinc_mmap_file
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas       823 Jul 25 15:15 pilotlog.txt
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas    480817 Jul 25 15:15 log.45743349._019653.job.log.1
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas       357 Jul 25 15:15 output.list
[2025-07-25 15:15:13] -rw-r--r--. 1 boincer umatlas       620 Jul 25 15:15 runtime_log
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas    860160 Jul 25 15:15 result.tar.gz
[2025-07-25 15:15:13] -rw-r--r--. 1 boincer umatlas      8667 Jul 25 15:15 runtime_log.err
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas       654 Jul 25 15:15 OHKODmTcUz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWHPLDmbNBchm.diag
[2025-07-25 15:15:13] -rw-r--r--. 1 boincer umatlas     21368 Jul 25 15:15 stderr.txt
[2025-07-25 15:15:13] HITS file was successfully produced:
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas 207880286 Jul 25 15:14 shared/HITS.pool.root.1
[2025-07-25 15:15:13]  *** Contents of shared directory: ***
[2025-07-25 15:15:13] total 350552
[2025-07-25 15:15:13] -rw-r--r--. 2 boincer umatlas 149653554 Jul 25 13:51 ATLAS.root_0
[2025-07-25 15:15:13] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 13:51 start_atlas.sh
[2025-07-25 15:15:13] -rw-r--r--. 2 boincer umatlas    542887 Jul 25 13:51 input.tar.gz
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas 207880286 Jul 25 15:14 HITS.pool.root.1
[2025-07-25 15:15:13] -rw-------. 1 boincer umatlas    860160 Jul 25 15:15 result.tar.gz
15:15:14 (2606966): run_atlas exited; CPU time 46105.594901
15:15:14 (2606966): called boinc_finish(0)

</stderr_txt>
]]>

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