Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:10:20 (2427237): wrapper (7.7.26015): starting
20:10:20 (2427237): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 20:10:20] Arguments: --nthreads 4
[2025-07-27 20:10:20] Threads: 4
[2025-07-27 20:10:20] Checking for CVMFS
[2025-07-27 20:10:20] No cvmfs_config command found, will try listing directly
[2025-07-27 20:10:20] CVMFS is ok
[2025-07-27 20:10:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:10:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:10:20] Further information can be found at the LHC@home message board.
[2025-07-27 20:10:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:10:20] Checking for apptainer binary...
[2025-07-27 20:10:20] which: no apptainer in ((null))
[2025-07-27 20:10:20] apptainer is not installed, using version from CVMFS
[2025-07-27 20:10:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:10:20] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-07-27 20:10:20] apptainer works
[2025-07-27 20:10:20] Set ATHENA_PROC_NUMBER=4
[2025-07-27 20:10:20] Set ATHENA_CORE_NUMBER=4
[2025-07-27 20:10:20] Starting ATLAS job with PandaID=6744979984
[2025-07-27 20:10:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:34:10 (3195803): wrapper (7.7.26015): starting
22:34:10 (3195803): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 22:34:10] Arguments: --nthreads 4
[2025-07-27 22:34:10] Threads: 4
[2025-07-27 22:34:10] This job has been restarted, cleaning up previous attempt
[2025-07-27 22:34:10] Checking for CVMFS
[2025-07-27 22:34:10] No cvmfs_config command found, will try listing directly
[2025-07-27 22:34:10] CVMFS is ok
[2025-07-27 22:34:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:34:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:34:10] Further information can be found at the LHC@home message board.
[2025-07-27 22:34:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:34:10] Checking for apptainer binary...
[2025-07-27 22:34:10] which: no apptainer in ((null))
[2025-07-27 22:34:10] apptainer is not installed, using version from CVMFS
[2025-07-27 22:34:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:34:10] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-07-27 22:34:10] apptainer works
[2025-07-27 22:34:10] Set ATHENA_PROC_NUMBER=4
[2025-07-27 22:34:10] Set ATHENA_CORE_NUMBER=4
[2025-07-27 22:34:10] Starting ATLAS job with PandaID=6744979984
[2025-07-27 22:34:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 01:34:29]  *** The last 200 lines of the pilot log: ***
[2025-07-28 01:34:29] 2025-07-27 23:33:53,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:34:29] 2025-07-27 23:33:55,018 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 01:34:29] 2025-07-27 23:33:55,040 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2660.7278359375014
[2025-07-28 01:34:29] 2025-07-27 23:33:55,064 | INFO     | using path: /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6744979984/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:34:29] 2025-07-27 23:33:55,065 | INFO     | extracted standard info from prmon json
[2025-07-28 01:34:29] 2025-07-27 23:33:55,065 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 01:34:29] 2025-07-27 23:33:55,066 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 01:34:29] 2025-07-27 23:33:55,066 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 01:34:29] 2025-07-27 23:33:55,066 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 01:34:29] 2025-07-27 23:33:55,069 | INFO     | fitting pss+swap vs Time
[2025-07-28 01:34:29] 2025-07-27 23:33:55,070 | INFO     | sum of square deviations: 1690450300.0
[2025-07-28 01:34:29] 2025-07-27 23:33:55,071 | INFO     | sum of deviations: 17949716649.999996
[2025-07-28 01:34:29] 2025-07-27 23:33:55,071 | INFO     | mean x: 1753653834.5
[2025-07-28 01:34:29] 2025-07-27 23:33:55,071 | INFO     | mean y: 2312738.9204545454
[2025-07-28 01:34:29] 2025-07-27 23:33:55,071 | INFO     | -- intersect: -18618518309.150574
[2025-07-28 01:34:29] 2025-07-27 23:33:55,071 | INFO     | intersect: -18618518309.150574
[2025-07-28 01:34:29] 2025-07-27 23:33:55,072 | INFO     | chi2: 1.4495256795645777
[2025-07-28 01:34:29] 2025-07-27 23:33:55,072 | INFO     | sum of square deviations: 1550429070.0
[2025-07-28 01:34:29] 2025-07-27 23:33:55,073 | INFO     | sum of deviations: 17438694335.0
[2025-07-28 01:34:29] 2025-07-27 23:33:55,073 | INFO     | mean x: 1753653682.0
[2025-07-28 01:34:29] 2025-07-27 23:33:55,073 | INFO     | mean y: 2312182.210526316
[2025-07-28 01:34:29] 2025-07-27 23:33:55,073 | INFO     | -- intersect: -19722182876.3382
[2025-07-28 01:34:29] 2025-07-27 23:33:55,073 | INFO     | intersect: -19722182876.3382
[2025-07-28 01:34:29] 2025-07-27 23:33:55,074 | INFO     | chi2: 1.450770528706792
[2025-07-28 01:34:29] 2025-07-27 23:33:55,074 | INFO     | current chi2=1.450770528706792 (change=-0.08587975775553583 %)
[2025-07-28 01:34:29] 2025-07-27 23:33:55,074 | INFO     | right removable region: 170
[2025-07-28 01:34:29] 2025-07-27 23:33:55,074 | INFO     | sum of square deviations: 1550429070.0
[2025-07-28 01:34:29] 2025-07-27 23:33:55,075 | INFO     | sum of deviations: -6013563548.999999
[2025-07-28 01:34:29] 2025-07-27 23:33:55,076 | INFO     | mean x: 1753653987.0
[2025-07-28 01:34:29] 2025-07-27 23:33:55,076 | INFO     | mean y: 2338467.374269006
[2025-07-28 01:34:29] 2025-07-27 23:33:55,076 | INFO     | -- intersect: 6804139270.671719
[2025-07-28 01:34:29] 2025-07-27 23:33:55,076 | INFO     | intersect: 6804139270.671719
[2025-07-28 01:34:29] 2025-07-27 23:33:55,076 | INFO     | chi2: 0.010405804410120357
[2025-07-28 01:34:29] 2025-07-27 23:33:55,077 | INFO     | current chi2=0.010405804410120357 (change=99.28212348654313 %)
[2025-07-28 01:34:29] 2025-07-27 23:33:55,077 | INFO     | sum of square deviations: 1418361477.5
[2025-07-28 01:34:29] 2025-07-27 23:33:55,078 | INFO     | sum of deviations: -5669790790.0
[2025-07-28 01:34:29] 2025-07-27 23:33:55,078 | INFO     | mean x: 1753654139.5
[2025-07-28 01:34:29] 2025-07-27 23:33:55,078 | INFO     | mean y: 2338066.373493976
[2025-07-28 01:34:29] 2025-07-27 23:33:55,078 | INFO     | -- intersect: 7012435454.599039
[2025-07-28 01:34:29] 2025-07-27 23:33:55,078 | INFO     | intersect: 7012435454.599039
[2025-07-28 01:34:29] 2025-07-27 23:33:55,079 | INFO     | chi2: 0.010290711941882849
[2025-07-28 01:34:29] 2025-07-27 23:33:55,079 | INFO     | current chi2=0.010290711941882849 (change=1.106041048835909 %)
[2025-07-28 01:34:29] 2025-07-27 23:33:55,079 | INFO     | left removable region: 20
[2025-07-28 01:34:29] 2025-07-27 23:33:55,079 | INFO     | sum of square deviations: 1046484737.5
[2025-07-28 01:34:29] 2025-07-27 23:33:55,080 | INFO     | sum of deviations: -2985543343.500001
[2025-07-28 01:34:29] 2025-07-27 23:33:55,080 | INFO     | mean x: 1753654261.5
[2025-07-28 01:34:29] 2025-07-27 23:33:55,080 | INFO     | mean y: 2334865.5933333333
[2025-07-28 01:34:29] 2025-07-27 23:33:55,080 | INFO     | -- intersect: 5005380413.805865
[2025-07-28 01:34:29] 2025-07-27 23:33:55,081 | INFO     | intersect: 5005380413.805865
[2025-07-28 01:34:29] 2025-07-27 23:33:55,081 | INFO     | chi2: 0.007370554335876908
[2025-07-28 01:34:29] 2025-07-27 23:33:55,081 | INFO     | -- intersect: 5005380413.805865
[2025-07-28 01:34:29] 2025-07-27 23:33:55,081 | INFO     | current memory leak: -2.85 B/s (using 150 data points, chi2=0.01)
[2025-07-28 01:34:29] 2025-07-27 23:33:55,081 | INFO     | could have reported an average CPU frequency of 2696 MHz (9 samples)
[2025-07-28 01:34:29] 2025-07-27 23:33:55,082 | INFO     | ..............................
[2025-07-28 01:34:29] 2025-07-27 23:33:55,082 | INFO     | . Timing measurements:
[2025-07-28 01:34:29] 2025-07-27 23:33:55,082 | INFO     | . get job = 0 s
[2025-07-28 01:34:29] 2025-07-27 23:33:55,082 | INFO     | . initial setup = 1 s
[2025-07-28 01:34:29] 2025-07-27 23:33:55,082 | INFO     | . payload setup = 9 s
[2025-07-28 01:34:29] 2025-07-27 23:33:55,082 | INFO     | . stage-in = 0 s
[2025-07-28 01:34:29] 2025-07-27 23:33:55,082 | INFO     | . payload execution = 10732 s
[2025-07-28 01:34:29] 2025-07-27 23:33:55,082 | INFO     | . stage-out = 1 s
[2025-07-28 01:34:29] 2025-07-27 23:33:55,082 | INFO     | . log creation = 0 s
[2025-07-28 01:34:29] 2025-07-27 23:33:55,082 | INFO     | ..............................
[2025-07-28 01:34:29] 2025-07-27 23:33:55,422 | INFO     | 
[2025-07-28 01:34:29] 2025-07-27 23:33:55,423 | INFO     | job summary report
[2025-07-28 01:34:29] 2025-07-27 23:33:55,423 | INFO     | --------------------------------------------------
[2025-07-28 01:34:29] 2025-07-27 23:33:55,423 | INFO     | PanDA job id: 6744979984
[2025-07-28 01:34:29] 2025-07-27 23:33:55,423 | INFO     | task id: 45743349
[2025-07-28 01:34:29] 2025-07-27 23:33:55,423 | INFO     | errors: (none)
[2025-07-28 01:34:29] 2025-07-27 23:33:55,423 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 01:34:29] 2025-07-27 23:33:55,423 | INFO     | pilot state: finished 
[2025-07-28 01:34:29] 2025-07-27 23:33:55,423 | INFO     | transexitcode: 0
[2025-07-28 01:34:29] 2025-07-27 23:33:55,424 | INFO     | exeerrorcode: 0
[2025-07-28 01:34:29] 2025-07-27 23:33:55,424 | INFO     | exeerrordiag: 
[2025-07-28 01:34:29] 2025-07-27 23:33:55,424 | INFO     | exitcode: 0
[2025-07-28 01:34:29] 2025-07-27 23:33:55,424 | INFO     | exitmsg: OK
[2025-07-28 01:34:29] 2025-07-27 23:33:55,424 | INFO     | cpuconsumptiontime: 41278 s
[2025-07-28 01:34:29] 2025-07-27 23:33:55,424 | INFO     | nevents: 400
[2025-07-28 01:34:29] 2025-07-27 23:33:55,424 | INFO     | neventsw: 0
[2025-07-28 01:34:29] 2025-07-27 23:33:55,424 | INFO     | pid: 3211819
[2025-07-28 01:34:29] 2025-07-27 23:33:55,424 | INFO     | pgrp: 3211819
[2025-07-28 01:34:29] 2025-07-27 23:33:55,424 | INFO     | corecount: 4
[2025-07-28 01:34:29] 2025-07-27 23:33:55,424 | INFO     | event service: False
[2025-07-28 01:34:29] 2025-07-27 23:33:55,425 | INFO     | sizes: {0: 2397314, 1: 2397513, 7: 2397775, 12: 2397803, 10746: 2427163, 10747: 2436185, 10748: 2436369, 10754: 2436627}
[2025-07-28 01:34:29] 2025-07-27 23:33:55,425 | INFO     | --------------------------------------------------
[2025-07-28 01:34:29] 2025-07-27 23:33:55,425 | INFO     | 
[2025-07-28 01:34:29] 2025-07-27 23:33:55,425 | INFO     | executing command: ls -lF /scratch/boinc/var/slot124/slots/0
[2025-07-28 01:34:29] 2025-07-27 23:33:55,458 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,459 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,459 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,459 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,459 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,459 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,459 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,460 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,460 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,460 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,460 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,460 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,460 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,460 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,460 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,460 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,460 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,460 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 01:34:29] 2025-07-27 23:33:55,461 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,461 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 01:34:29] 2025-07-27 23:33:55,461 | INFO     | job 6744979984 has completed (purged errors)
[2025-07-28 01:34:29] 2025-07-27 23:33:55,461 | INFO     | overall cleanup function is called
[2025-07-28 01:34:29] 2025-07-27 23:33:56,469 | INFO     | --- collectZombieJob: --- 10, [3211819]
[2025-07-28 01:34:29] 2025-07-27 23:33:56,470 | INFO     | zombie collector waiting for pid 3211819
[2025-07-28 01:34:29] 2025-07-27 23:33:56,470 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 01:34:29] 2025-07-27 23:33:56,470 | INFO     | collected zombie processes
[2025-07-28 01:34:29] 2025-07-27 23:33:56,470 | INFO     | will attempt to kill all subprocesses of pid=3211819
[2025-07-28 01:34:29] 2025-07-27 23:33:57,159 | INFO     | process IDs to be killed: [3211819] (in reverse order)
[2025-07-28 01:34:29] 2025-07-27 23:33:57,449 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 01:34:29] 2025-07-27 23:33:57,450 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 01:34:29] 2025-07-27 23:33:57,474 | INFO     | did not find any defunct processes belonging to 3211819
[2025-07-28 01:34:29] 2025-07-27 23:33:57,496 | INFO     | did not find any defunct processes belonging to 3211819
[2025-07-28 01:34:29] 2025-07-27 23:33:57,496 | INFO     | ready for new job
[2025-07-28 01:34:29] 2025-07-27 23:33:57,497 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 01:34:29] 2025-07-27 23:33:57,499 | INFO     | ***************************************
[2025-07-28 01:34:29] 2025-07-27 23:33:57,499 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 01:34:29] 2025-07-27 23:33:57,499 | INFO     | ***************************************
[2025-07-28 01:34:29] 2025-07-27 23:33:57,499 | INFO     | 
[2025-07-28 01:34:29] 2025-07-27 23:33:57,507 | INFO     | architecture information:
[2025-07-28 01:34:29] 2025-07-27 23:33:57,508 | INFO     | executing command: cat /etc/os-release
[2025-07-28 01:34:29] 2025-07-27 23:33:57,529 | INFO     | cat /etc/os-release:
[2025-07-28 01:34:29] NAME="CentOS Linux"
[2025-07-28 01:34:29] VERSION="7 (Core)"
[2025-07-28 01:34:29] ID="centos"
[2025-07-28 01:34:29] ID_LIKE="rhel fedora"
[2025-07-28 01:34:29] VERSION_ID="7"
[2025-07-28 01:34:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 01:34:29] ANSI_COLOR="0;31"
[2025-07-28 01:34:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 01:34:29] HOME_URL="https://www.centos.org/"
[2025-07-28 01:34:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 01:34:29] 
[2025-07-28 01:34:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 01:34:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 01:34:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 01:34:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 01:34:29] 
[2025-07-28 01:34:29] 2025-07-27 23:33:57,529 | INFO     | ***************************************
[2025-07-28 01:34:29] 2025-07-27 23:33:58,032 | INFO     | executing command: df -mP /scratch/boinc/var/slot124/slots/0
[2025-07-28 01:34:29] 2025-07-27 23:33:58,053 | INFO     | sufficient remaining disk space (3297352089600 B)
[2025-07-28 01:34:29] 2025-07-27 23:33:58,054 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 01:34:29] 2025-07-27 23:33:58,054 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 01:34:29] 2025-07-27 23:33:58,054 | INFO     | update_server=False
[2025-07-28 01:34:29] 2025-07-27 23:33:58,054 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 01:34:29] 2025-07-27 23:33:58,054 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:34:29] 2025-07-27 23:33:58,055 | INFO     | aborting loop
[2025-07-28 01:34:29] 2025-07-27 23:33:58,777 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 01:34:29] 2025-07-27 23:33:58,796 | INFO     | all payload control threads have been joined
[2025-07-28 01:34:29] 2025-07-27 23:33:58,804 | INFO     | all data control threads have been joined
[2025-07-28 01:34:29] 2025-07-27 23:33:58,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 01:34:29] 2025-07-27 23:33:59,060 | INFO     | [job] retrieve thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:33:59,060 | INFO     | [job] job monitor thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:33:59,090 | INFO     | [data] copytool_in thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:33:59,358 | INFO     | [payload] validate_post thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:33:59,407 | INFO     | all job control threads have been joined
[2025-07-28 01:34:29] 2025-07-27 23:33:59,467 | INFO     | [job] validate thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:33:59,654 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:33:59,691 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:33:59,801 | INFO     | [payload] control thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:33:59,810 | INFO     | [data] control thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:34:00,173 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:34:00,188 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:34:29] 2025-07-27 23:34:00,343 | INFO     | [payload] failed_post thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:34:00,412 | INFO     | [job] control thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:34:00,782 | INFO     | [data] copytool_out thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:34:01,193 | INFO     | [job] queue monitor thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:34:02,867 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:34:08,483 | INFO     | job.realtimelogging is not enabled
[2025-07-28 01:34:29] 2025-07-27 23:34:09,488 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 01:34:29] 2025-07-27 23:34:11,469 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22503651301184)>', '<ExcThread(monitor, started 22503420303104)>']
[2025-07-28 01:34:29] 2025-07-27 23:34:16,494 | INFO     | all workflow threads have been joined
[2025-07-28 01:34:29] 2025-07-27 23:34:16,497 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 01:34:29] 2025-07-27 23:34:16,497 | INFO     | traces error code: 0
[2025-07-28 01:34:29] 2025-07-27 23:34:16,497 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 01:34:29] 2025-07-27 23:34:21,235 [wrapper] supervise_pilot (15 min periods counter: 13)
[2025-07-28 01:34:29] 2025-07-27 23:34:26,935 | INFO     | 10775s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-28 01:34:29] 2025-07-27 23:34:28,701 | INFO     | PID=3200505 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 01:34:29] 2025-07-27 23:34:28,701 | INFO     | .. there are 25 such processes running
[2025-07-28 01:34:29] 2025-07-27 23:34:28,701 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 01:34:29] 2025-07-27 23:34:28,701 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 01:34:29] 2025-07-27 23:34:28,701 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 01:34:29] 2025-07-27 23:34:28,701 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 01:34:29] 2025-07-27 23:34:28,701 | INFO     | [monitor] control thread has ended
[2025-07-28 01:34:29] 2025-07-27 23:34:28,933 [wrapper] ==== pilot stdout END ====
[2025-07-28 01:34:29] 2025-07-27 23:34:28,938 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 01:34:29] 2025-07-27 23:34:28,942 [wrapper] pilotpid: 3200505
[2025-07-28 01:34:29] 2025-07-27 23:34:28,946 [wrapper] Pilot exit status: 0
[2025-07-28 01:34:29] 2025-07-27 23:34:28,963 [wrapper] pandaids: 6744979984 6744979984
[2025-07-28 01:34:29] 2025-07-27 23:34:29,109 [wrapper] cleanup supervisor_pilot   27337 3200506
[2025-07-28 01:34:29] 2025-07-27 23:34:29,113 [wrapper] Test setup, not cleaning
[2025-07-28 01:34:29] 2025-07-27 23:34:29,116 [wrapper] apfmon messages muted
[2025-07-28 01:34:29] 2025-07-27 23:34:29,119 [wrapper] ==== wrapper stdout END ====
[2025-07-28 01:34:29] 2025-07-27 23:34:29,122 [wrapper] ==== wrapper stderr END ====
[2025-07-28 01:34:29]  *** Error codes and diagnostics ***
[2025-07-28 01:34:29]     "exeErrorCode": 0,
[2025-07-28 01:34:29]     "exeErrorDiag": "",
[2025-07-28 01:34:29]     "pilotErrorCode": 0,
[2025-07-28 01:34:29]     "pilotErrorDiag": "",
[2025-07-28 01:34:29]  *** Listing of results directory ***
[2025-07-28 01:34:29] total 496676
[2025-07-28 01:34:29] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-28 01:34:29] -rw-r--r-- 1 boinc boinc    530466 Jul 25 11:47 pilot3.tar.gz
[2025-07-28 01:34:29] -rwx------ 1 boinc boinc     36292 Jul 25 12:01 runpilot2-wrapper.sh
[2025-07-28 01:34:29] -rw-r--r-- 1 boinc boinc      5112 Jul 25 12:01 queuedata.json
[2025-07-28 01:34:29] -rw-r--r-- 1 boinc boinc       100 Jul 27 20:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 01:34:29] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 20:10 run_atlas
[2025-07-28 01:34:29] -rw-r--r-- 1 boinc boinc       105 Jul 27 20:10 job.xml
[2025-07-28 01:34:29] -rw-r--r-- 3 boinc boinc 145322777 Jul 27 20:10 EVNT.45743347._001015.pool.root.1
[2025-07-28 01:34:29] -rw-r--r-- 3 boinc boinc 145322777 Jul 27 20:10 ATLAS.root_0
[2025-07-28 01:34:29] -rw-r--r-- 2 boinc boinc     15095 Jul 27 20:10 start_atlas.sh
[2025-07-28 01:34:29] drwxrwx--x 2 boinc boinc      4096 Jul 27 20:10 shared
[2025-07-28 01:34:29] -rw-r--r-- 2 boinc boinc    542895 Jul 27 20:10 input.tar.gz
[2025-07-28 01:34:29] -rw-r--r-- 1 boinc boinc         0 Jul 27 20:10 boinc_lockfile
[2025-07-28 01:34:29] -rw-r--r-- 1 boinc boinc      6697 Jul 27 22:34 init_data.xml
[2025-07-28 01:34:29] -rw-r--r-- 1 boinc boinc      2562 Jul 27 22:34 pandaJob.out
[2025-07-28 01:34:29] -rw------- 1 boinc boinc    980109 Jul 27 22:34 agis_schedconf.cvmfs.json
[2025-07-28 01:34:29] -rw------- 1 boinc boinc 211443079 Jul 28 01:33 HITS.45743349._019463.pool.root.1
[2025-07-28 01:34:29] -rw-r--r-- 1 boinc boinc       531 Jul 28 01:33 boinc_task_state.xml
[2025-07-28 01:34:29] -rw------- 1 boinc boinc        96 Jul 28 01:33 pilot_heartbeat.json
[2025-07-28 01:34:29] -rw------- 1 boinc boinc      1032 Jul 28 01:33 memory_monitor_summary.json
[2025-07-28 01:34:29] -rw------- 1 boinc boinc   1593052 Jul 28 01:33 agis_ddmendpoints.agis.ALL.json
[2025-07-28 01:34:29] -rw------- 1 boinc boinc    307025 Jul 28 01:33 log.45743349._019463.job.log.tgz.1
[2025-07-28 01:34:29] -rw------- 1 boinc boinc      7789 Jul 28 01:33 heartbeat.json
[2025-07-28 01:34:29] -rw-r--r-- 1 boinc boinc        28 Jul 28 01:34 wrapper_checkpoint.txt
[2025-07-28 01:34:29] -rw-r--r-- 1 boinc boinc      8192 Jul 28 01:34 boinc_mmap_file
[2025-07-28 01:34:29] -rw------- 1 boinc boinc       939 Jul 28 01:34 pilotlog.txt
[2025-07-28 01:34:29] -rw------- 1 boinc boinc   1005681 Jul 28 01:34 log.45743349._019463.job.log.1
[2025-07-28 01:34:29] -rw------- 1 boinc boinc       357 Jul 28 01:34 output.list
[2025-07-28 01:34:29] -rw-r--r-- 1 boinc boinc       620 Jul 28 01:34 runtime_log
[2025-07-28 01:34:29] -rw------- 1 boinc boinc   1331200 Jul 28 01:34 result.tar.gz
[2025-07-28 01:34:29] -rw-r--r-- 1 boinc boinc      9119 Jul 28 01:34 runtime_log.err
[2025-07-28 01:34:29] -rw------- 1 boinc boinc       790 Jul 28 01:34 897LDmQQUz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmZnyKDmTOWSNm.diag
[2025-07-28 01:34:29] -rw-r--r-- 1 boinc boinc     22853 Jul 28 01:34 stderr.txt
[2025-07-28 01:34:29] HITS file was successfully produced:
[2025-07-28 01:34:29] -rw------- 1 boinc boinc 211443079 Jul 28 01:33 shared/HITS.pool.root.1
[2025-07-28 01:34:29]  *** Contents of shared directory: ***
[2025-07-28 01:34:29] total 350264
[2025-07-28 01:34:29] -rw-r--r-- 3 boinc boinc 145322777 Jul 27 20:10 ATLAS.root_0
[2025-07-28 01:34:29] -rw-r--r-- 2 boinc boinc     15095 Jul 27 20:10 start_atlas.sh
[2025-07-28 01:34:29] -rw-r--r-- 2 boinc boinc    542895 Jul 27 20:10 input.tar.gz
[2025-07-28 01:34:29] -rw------- 1 boinc boinc 211443079 Jul 28 01:33 HITS.pool.root.1
[2025-07-28 01:34:29] -rw------- 1 boinc boinc   1331200 Jul 28 01:34 result.tar.gz
01:34:31 (3195803): run_atlas exited; CPU time 41846.862826
01:34:31 (3195803): called boinc_finish(0)

</stderr_txt>
]]>

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