Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:19:10 (3675482): wrapper (7.7.26015): starting
12:19:10 (3675482): wrapper: running run_atlas (--nthreads 10)
[2025-07-25 12:19:10] Arguments: --nthreads 10
[2025-07-25 12:19:10] Threads: 10
[2025-07-25 12:19:10] Checking for CVMFS
[2025-07-25 12:19:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 12:19:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 12:19:12] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 12:19:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 12:19:13] 2.12.6.0 71612 24614 461700 148747 1 64 20677310 21042176 19376 16776704 0 64793121 99.067 143604636 30570 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 12:19:13] CVMFS is ok
[2025-07-25 12:19:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 12:19:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 12:19:13] Further information can be found at the LHC@home message board.
[2025-07-25 12:19:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 12:19:13] Checking for apptainer binary...
[2025-07-25 12:19:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 12:19:13] Running /usr/bin/apptainer --version
[2025-07-25 12:19:13] apptainer version 1.4.1-1.el9
[2025-07-25 12:19:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 12:19:14] c-16-16.aglt2.org
[2025-07-25 12:19:14] apptainer works
[2025-07-25 12:19:14] Set ATHENA_PROC_NUMBER=10
[2025-07-25 12:19:14] Set ATHENA_CORE_NUMBER=10
[2025-07-25 12:19:14] Starting ATLAS job with PandaID=6744979872
[2025-07-25 12:19:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 23:58:03]  *** The last 200 lines of the pilot log: ***
[2025-07-25 23:58:03] 2025-07-26 03:57:26,932 | INFO     | monitor loop #1954: job 0:6744979872 is in state 'finished'
[2025-07-25 23:58:03] 2025-07-26 03:57:26,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 23:58:03] 2025-07-26 03:57:27,236 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-25 23:58:03] 2025-07-26 03:57:27,369 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.831050000002
[2025-07-25 23:58:03] 2025-07-26 03:57:27,462 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744979872/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 23:58:03] 2025-07-26 03:57:27,463 | INFO     | extracted standard info from prmon json
[2025-07-25 23:58:03] 2025-07-26 03:57:27,464 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 23:58:03] 2025-07-26 03:57:27,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 23:58:03] 2025-07-26 03:57:27,465 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 23:58:03] 2025-07-26 03:57:27,465 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 23:58:03] 2025-07-26 03:57:27,484 | INFO     | fitting pss+swap vs Time
[2025-07-25 23:58:03] 2025-07-26 03:57:27,485 | INFO     | sum of square deviations: 98360306403.27274
[2025-07-25 23:58:03] 2025-07-26 03:57:27,506 | INFO     | sum of deviations: -83640405531.54553
[2025-07-25 23:58:03] 2025-07-26 03:57:27,507 | INFO     | mean x: 1753481401.2727273
[2025-07-25 23:58:03] 2025-07-26 03:57:27,507 | INFO     | mean y: 2225315.680351906
[2025-07-25 23:58:03] 2025-07-26 03:57:27,507 | INFO     | -- intersect: 1493293215.5013082
[2025-07-25 23:58:03] 2025-07-26 03:57:27,507 | INFO     | intersect: 1493293215.5013082
[2025-07-25 23:58:03] 2025-07-26 03:57:27,513 | INFO     | chi2: 3.7091913988191556
[2025-07-25 23:58:03] 2025-07-26 03:57:27,514 | INFO     | sum of square deviations: 96212882682.76546
[2025-07-25 23:58:03] 2025-07-26 03:57:27,536 | INFO     | sum of deviations: -30806842463.2718
[2025-07-25 23:58:03] 2025-07-26 03:57:27,537 | INFO     | mean x: 1753481248.7784343
[2025-07-25 23:58:03] 2025-07-26 03:57:27,537 | INFO     | mean y: 2229053.611521418
[2025-07-25 23:58:03] 2025-07-26 03:57:27,537 | INFO     | -- intersect: 563684225.5922977
[2025-07-25 23:58:03] 2025-07-26 03:57:27,537 | INFO     | intersect: 563684225.5922977
[2025-07-25 23:58:03] 2025-07-26 03:57:27,538 | INFO     | chi2: 3.014766678070779
[2025-07-25 23:58:03] 2025-07-26 03:57:27,538 | INFO     | current chi2=3.014766678070779 (change=18.721727893832902 %)
[2025-07-25 23:58:03] 2025-07-26 03:57:27,539 | INFO     | right removable region: 676
[2025-07-25 23:58:03] 2025-07-26 03:57:27,540 | INFO     | sum of square deviations: 96212561212.76541
[2025-07-25 23:58:03] 2025-07-26 03:57:27,555 | INFO     | sum of deviations: -201350569635.51245
[2025-07-25 23:58:03] 2025-07-26 03:57:27,555 | INFO     | mean x: 1753481553.7784343
[2025-07-25 23:58:03] 2025-07-26 03:57:27,555 | INFO     | mean y: 2233656.4032496307
[2025-07-25 23:58:03] 2025-07-26 03:57:27,556 | INFO     | -- intersect: 3671863746.780751
[2025-07-25 23:58:03] 2025-07-26 03:57:27,556 | INFO     | intersect: 3671863746.780751
[2025-07-25 23:58:03] 2025-07-26 03:57:27,557 | INFO     | chi2: 1.9701528865101374
[2025-07-25 23:58:03] 2025-07-26 03:57:27,557 | INFO     | current chi2=1.9701528865101374 (change=46.88457200840733 %)
[2025-07-25 23:58:03] 2025-07-26 03:57:27,558 | INFO     | sum of square deviations: 94096304984.71281
[2025-07-25 23:58:03] 2025-07-26 03:57:27,583 | INFO     | sum of deviations: -224500344363.8329
[2025-07-25 23:58:03] 2025-07-26 03:57:27,583 | INFO     | mean x: 1753481706.2842262
[2025-07-25 23:58:03] 2025-07-26 03:57:27,618 | INFO     | mean y: 2235323.1666666665
[2025-07-25 23:58:03] 2025-07-26 03:57:27,619 | INFO     | -- intersect: 4185792232.871515
[2025-07-25 23:58:03] 2025-07-26 03:57:27,619 | INFO     | intersect: 4185792232.871515
[2025-07-25 23:58:03] 2025-07-26 03:57:27,620 | INFO     | chi2: 1.8908044441465068
[2025-07-25 23:58:03] 2025-07-26 03:57:27,620 | INFO     | current chi2=1.8908044441465068 (change=4.027527148118223 %)
[2025-07-25 23:58:03] 2025-07-26 03:57:27,621 | INFO     | left removable region: 20
[2025-07-25 23:58:03] 2025-07-26 03:57:27,622 | INFO     | sum of square deviations: 87533973893.69398
[2025-07-25 23:58:03] 2025-07-26 03:57:27,684 | INFO     | sum of deviations: -150637660025.88733
[2025-07-25 23:58:03] 2025-07-26 03:57:27,684 | INFO     | mean x: 1753481828.285061
[2025-07-25 23:58:03] 2025-07-26 03:57:27,684 | INFO     | mean y: 2237515.9298780486
[2025-07-25 23:58:03] 2025-07-26 03:57:27,693 | INFO     | -- intersect: 3019813295.49591
[2025-07-25 23:58:03] 2025-07-26 03:57:27,693 | INFO     | intersect: 3019813295.49591
[2025-07-25 23:58:03] 2025-07-26 03:57:27,694 | INFO     | chi2: 1.1212880484569219
[2025-07-25 23:58:03] 2025-07-26 03:57:27,694 | INFO     | -- intersect: 3019813295.49591
[2025-07-25 23:58:03] 2025-07-26 03:57:27,695 | INFO     | current memory leak: -1.72 B/s (using 656 data points, chi2=1.12)
[2025-07-25 23:58:03] 2025-07-26 03:57:27,696 | INFO     | could have reported an average CPU frequency of 2899 MHz (26 samples)
[2025-07-25 23:58:03] 2025-07-26 03:57:27,696 | INFO     | ..............................
[2025-07-25 23:58:03] 2025-07-26 03:57:27,696 | INFO     | . Timing measurements:
[2025-07-25 23:58:03] 2025-07-26 03:57:27,697 | INFO     | . get job = 0 s
[2025-07-25 23:58:03] 2025-07-26 03:57:27,698 | INFO     | . initial setup = 16 s
[2025-07-25 23:58:03] 2025-07-26 03:57:27,698 | INFO     | . payload setup = 52 s
[2025-07-25 23:58:03] 2025-07-26 03:57:27,698 | INFO     | . stage-in = 0 s
[2025-07-25 23:58:03] 2025-07-26 03:57:27,698 | INFO     | . payload execution = 41596 s
[2025-07-25 23:58:03] 2025-07-26 03:57:27,698 | INFO     | . stage-out = 17 s
[2025-07-25 23:58:03] 2025-07-26 03:57:27,698 | INFO     | . log creation = 1 s
[2025-07-25 23:58:03] 2025-07-26 03:57:27,698 | INFO     | ..............................
[2025-07-25 23:58:03] 2025-07-26 03:57:28,770 | INFO     | 
[2025-07-25 23:58:03] 2025-07-26 03:57:28,771 | INFO     | job summary report
[2025-07-25 23:58:03] 2025-07-26 03:57:28,771 | INFO     | --------------------------------------------------
[2025-07-25 23:58:03] 2025-07-26 03:57:28,771 | INFO     | PanDA job id: 6744979872
[2025-07-25 23:58:03] 2025-07-26 03:57:28,771 | INFO     | task id: 45743349
[2025-07-25 23:58:03] 2025-07-26 03:57:28,771 | INFO     | errors: (none)
[2025-07-25 23:58:03] 2025-07-26 03:57:28,772 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 23:58:03] 2025-07-26 03:57:28,772 | INFO     | pilot state: finished 
[2025-07-25 23:58:03] 2025-07-26 03:57:28,772 | INFO     | transexitcode: 0
[2025-07-25 23:58:03] 2025-07-26 03:57:28,772 | INFO     | exeerrorcode: 0
[2025-07-25 23:58:03] 2025-07-26 03:57:28,772 | INFO     | exeerrordiag: 
[2025-07-25 23:58:03] 2025-07-26 03:57:28,772 | INFO     | exitcode: 0
[2025-07-25 23:58:03] 2025-07-26 03:57:28,772 | INFO     | exitmsg: OK
[2025-07-25 23:58:03] 2025-07-26 03:57:28,773 | INFO     | cpuconsumptiontime: 88525 s
[2025-07-25 23:58:03] 2025-07-26 03:57:28,773 | INFO     | nevents: 400
[2025-07-25 23:58:03] 2025-07-26 03:57:28,773 | INFO     | neventsw: 0
[2025-07-25 23:58:03] 2025-07-26 03:57:28,773 | INFO     | pid: 3697475
[2025-07-25 23:58:03] 2025-07-26 03:57:28,773 | INFO     | pgrp: 3697475
[2025-07-25 23:58:03] 2025-07-26 03:57:28,773 | INFO     | corecount: 10
[2025-07-25 23:58:03] 2025-07-26 03:57:28,774 | INFO     | event service: False
[2025-07-25 23:58:03] 2025-07-26 03:57:28,774 | INFO     | sizes: {0: 2396645, 1: 2397246, 2: 2397358, 3: 2397358, 4: 2397585, 15: 2397585, 27: 2397741, 39: 2398031, 51: 2398059, 41652: 2439937, 41653: 2439936, 41670: 2449
[2025-07-25 23:58:03] 2025-07-26 03:57:28,774 | INFO     | --------------------------------------------------
[2025-07-25 23:58:03] 2025-07-26 03:57:28,774 | INFO     | 
[2025-07-25 23:58:03] 2025-07-26 03:57:28,774 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 23:58:03] 2025-07-26 03:57:28,893 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,893 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,894 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,894 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,894 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,894 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,894 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,894 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,895 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,895 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,895 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,895 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,895 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,895 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,896 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,896 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,896 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,896 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 23:58:03] 2025-07-26 03:57:28,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,908 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 23:58:03] 2025-07-26 03:57:28,908 | INFO     | job 6744979872 has completed (purged errors)
[2025-07-25 23:58:03] 2025-07-26 03:57:28,908 | INFO     | overall cleanup function is called
[2025-07-25 23:58:03] 2025-07-26 03:57:29,265 | INFO     | PID=3682984 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 23:58:03] 2025-07-26 03:57:29,265 | INFO     | .. there are 31 such processes running
[2025-07-25 23:58:03] 2025-07-26 03:57:29,947 | INFO     | --- collectZombieJob: --- 10, [3697475]
[2025-07-25 23:58:03] 2025-07-26 03:57:29,948 | INFO     | zombie collector waiting for pid 3697475
[2025-07-25 23:58:03] 2025-07-26 03:57:29,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 23:58:03] 2025-07-26 03:57:29,948 | INFO     | collected zombie processes
[2025-07-25 23:58:03] 2025-07-26 03:57:29,949 | INFO     | will attempt to kill all subprocesses of pid=3697475
[2025-07-25 23:58:03] 2025-07-26 03:57:31,181 | INFO     | process IDs to be killed: [3697475] (in reverse order)
[2025-07-25 23:58:03] 2025-07-26 03:57:31,582 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 23:58:03] 2025-07-26 03:57:31,582 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 23:58:03] 2025-07-26 03:57:31,641 | INFO     | did not find any defunct processes belonging to 3697475
[2025-07-25 23:58:03] 2025-07-26 03:57:31,705 | INFO     | did not find any defunct processes belonging to 3697475
[2025-07-25 23:58:03] 2025-07-26 03:57:31,706 | INFO     | ready for new job
[2025-07-25 23:58:03] 2025-07-26 03:57:31,706 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 23:58:03] 2025-07-26 03:57:31,710 | INFO     | ***************************************
[2025-07-25 23:58:03] 2025-07-26 03:57:31,710 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 23:58:03] 2025-07-26 03:57:31,710 | INFO     | ***************************************
[2025-07-25 23:58:03] 2025-07-26 03:57:31,710 | INFO     | 
[2025-07-25 23:58:03] 2025-07-26 03:57:31,730 | INFO     | architecture information:
[2025-07-25 23:58:03] 2025-07-26 03:57:31,734 | INFO     | executing command: cat /etc/os-release
[2025-07-25 23:58:03] 2025-07-26 03:57:31,822 | INFO     | cat /etc/os-release:
[2025-07-25 23:58:03] NAME="CentOS Linux"
[2025-07-25 23:58:03] VERSION="7 (Core)"
[2025-07-25 23:58:03] ID="centos"
[2025-07-25 23:58:03] ID_LIKE="rhel fedora"
[2025-07-25 23:58:03] VERSION_ID="7"
[2025-07-25 23:58:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 23:58:03] ANSI_COLOR="0;31"
[2025-07-25 23:58:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 23:58:03] HOME_URL="https://www.centos.org/"
[2025-07-25 23:58:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 23:58:03] 
[2025-07-25 23:58:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 23:58:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 23:58:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 23:58:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 23:58:03] 
[2025-07-25 23:58:03] 2025-07-26 03:57:31,822 | INFO     | ***************************************
[2025-07-25 23:58:03] 2025-07-26 03:57:32,326 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 23:58:03] 2025-07-26 03:57:32,423 | INFO     | sufficient remaining disk space (53975449600 B)
[2025-07-25 23:58:03] 2025-07-26 03:57:32,423 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 23:58:03] 2025-07-26 03:57:32,423 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 23:58:03] 2025-07-26 03:57:32,424 | INFO     | update_server=False
[2025-07-25 23:58:03] 2025-07-26 03:57:32,424 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 23:58:03] 2025-07-26 03:57:32,424 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 23:58:03] 2025-07-26 03:57:32,599 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 23:58:03] 2025-07-26 03:57:32,675 | INFO     | all data control threads have been joined
[2025-07-25 23:58:03] 2025-07-26 03:57:32,856 | INFO     | all payload control threads have been joined
[2025-07-25 23:58:03] 2025-07-26 03:57:32,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 23:58:03] 2025-07-26 03:57:32,965 | INFO     | aborting loop
[2025-07-25 23:58:03] 2025-07-26 03:57:33,162 | INFO     | all job control threads have been joined
[2025-07-25 23:58:03] 2025-07-26 03:57:33,430 | INFO     | [job] retrieve thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:33,458 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:33,681 | INFO     | [data] control thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:33,782 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 23:58:03] 2025-07-26 03:57:33,835 | INFO     | [payload] validate_post thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:33,863 | INFO     | [payload] control thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:33,931 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:33,971 | INFO     | [job] job monitor thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:34,169 | INFO     | [job] control thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:34,194 | INFO     | [data] copytool_in thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:34,285 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:34,432 | INFO     | [data] copytool_out thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:34,437 | INFO     | [payload] failed_post thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:34,635 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:34,678 | INFO     | [job] validate thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:34,789 | INFO     | [job] queue monitor thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:36,640 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 23:58:03] 2025-07-26 03:57:37,456 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140129148569408)>', '<ExcThread(monitor, started 140128114689792)>']
[2025-07-25 23:58:03] 2025-07-26 03:57:42,481 | INFO     | all workflow threads have been joined
[2025-07-25 23:58:03] 2025-07-26 03:57:42,482 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 23:58:03] 2025-07-26 03:57:42,483 | INFO     | traces error code: 0
[2025-07-25 23:58:03] 2025-07-26 03:57:42,483 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 23:58:03] 2025-07-26 03:58:02,270 | INFO     | PID=3682984 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 23:58:03] 2025-07-26 03:58:02,270 | INFO     | .. there are 31 such processes running
[2025-07-25 23:58:03] 2025-07-26 03:58:02,271 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 23:58:03] 2025-07-26 03:58:02,271 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 23:58:03] 2025-07-26 03:58:02,271 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 23:58:03] 2025-07-26 03:58:02,272 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 23:58:03] 2025-07-26 03:58:02,272 | INFO     | [monitor] control thread has ended
[2025-07-25 23:58:03] 2025-07-26 03:58:02,697 [wrapper] ==== pilot stdout END ====
[2025-07-25 23:58:03] 2025-07-26 03:58:02,743 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 23:58:03] 2025-07-26 03:58:02,793 [wrapper] pilotpid: 3682984
[2025-07-25 23:58:03] 2025-07-26 03:58:02,818 [wrapper] Pilot exit status: 0
[2025-07-25 23:58:03] 2025-07-26 03:58:02,951 [wrapper] pandaids: 6744979872
[2025-07-25 23:58:03] 2025-07-26 03:58:03,112 [wrapper] cleanup supervisor_pilot 1413675 3682985
[2025-07-25 23:58:03] 2025-07-26 03:58:03,154 [wrapper] Test setup, not cleaning
[2025-07-25 23:58:03] 2025-07-26 03:58:03,190 [wrapper] apfmon messages muted
[2025-07-25 23:58:03] 2025-07-26 03:58:03,194 [wrapper] ==== wrapper stdout END ====
[2025-07-25 23:58:03] 2025-07-26 03:58:03,197 [wrapper] ==== wrapper stderr END ====
[2025-07-25 23:58:03]  *** Error codes and diagnostics ***
[2025-07-25 23:58:03]     "exeErrorCode": 0,
[2025-07-25 23:58:03]     "exeErrorDiag": "",
[2025-07-25 23:58:03]     "pilotErrorCode": 0,
[2025-07-25 23:58:03]     "pilotErrorDiag": "",
[2025-07-25 23:58:03]  *** Listing of results directory ***
[2025-07-25 23:58:03] total 358016
[2025-07-25 23:58:03] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 05:47 pilot3.tar.gz
[2025-07-25 23:58:03] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 05:54 queuedata.json
[2025-07-25 23:58:03] -rwx------. 1 boincer umatlas     36292 Jul 25 05:55 runpilot2-wrapper.sh
[2025-07-25 23:58:03] -rw-r--r--. 1 boincer umatlas       100 Jul 25 12:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 23:58:03] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 12:19 run_atlas
[2025-07-25 23:58:03] -rw-r--r--. 1 boincer umatlas       105 Jul 25 12:19 job.xml
[2025-07-25 23:58:03] -rw-r--r--. 2 boincer umatlas 144635303 Jul 25 12:19 EVNT.45743347._001008.pool.root.1
[2025-07-25 23:58:03] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 12:19 start_atlas.sh
[2025-07-25 23:58:03] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 12:19 shared
[2025-07-25 23:58:03] -rw-r--r--. 2 boincer umatlas    542890 Jul 25 12:19 input.tar.gz
[2025-07-25 23:58:03] -rw-r--r--. 1 boincer umatlas         0 Jul 25 12:19 boinc_lockfile
[2025-07-25 23:58:03] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 12:19 pandaJob.out
[2025-07-25 23:58:03] -rw-------. 1 boincer umatlas    979309 Jul 25 12:20 agis_schedconf.cvmfs.json
[2025-07-25 23:58:03] drwx------. 4 boincer umatlas      4096 Jul 25 12:20 pilot3
[2025-07-25 23:58:03] -rw-------. 1 boincer umatlas 211343352 Jul 25 23:55 HITS.45743349._019351.pool.root.1
[2025-07-25 23:58:03] -rw-r--r--. 1 boincer umatlas       531 Jul 25 23:55 boinc_task_state.xml
[2025-07-25 23:58:03] -rw-r--r--. 1 boincer umatlas      6523 Jul 25 23:56 init_data.xml
[2025-07-25 23:58:03] -rw-------. 1 boincer umatlas      1039 Jul 25 23:56 memory_monitor_summary.json
[2025-07-25 23:58:03] -rw-------. 1 boincer umatlas   1593052 Jul 25 23:56 agis_ddmendpoints.agis.ALL.json
[2025-07-25 23:58:03] -rw-------. 1 boincer umatlas    614501 Jul 25 23:56 log.45743349._019351.job.log.tgz.1
[2025-07-25 23:58:03] -rw-------. 1 boincer umatlas      7815 Jul 25 23:57 heartbeat.json
[2025-07-25 23:58:03] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 23:57 boinc_mmap_file
[2025-07-25 23:58:03] -rw-r--r--. 1 boincer umatlas        28 Jul 25 23:57 wrapper_checkpoint.txt
[2025-07-25 23:58:03] -rw-------. 1 boincer umatlas        95 Jul 25 23:58 pilot_heartbeat.json
[2025-07-25 23:58:03] -rw-------. 1 boincer umatlas       823 Jul 25 23:58 pilotlog.txt
[2025-07-25 23:58:03] -rw-------. 1 boincer umatlas   2764462 Jul 25 23:58 log.45743349._019351.job.log.1
[2025-07-25 23:58:03] -rw-------. 1 boincer umatlas       357 Jul 25 23:58 output.list
[2025-07-25 23:58:03] -rw-r--r--. 1 boincer umatlas       620 Jul 25 23:58 runtime_log
[2025-07-25 23:58:03] -rw-------. 1 boincer umatlas   3399680 Jul 25 23:58 result.tar.gz
[2025-07-25 23:58:03] -rw-r--r--. 1 boincer umatlas      8658 Jul 25 23:58 runtime_log.err
[2025-07-25 23:58:03] -rw-------. 1 boincer umatlas       657 Jul 25 23:58 5CdMDmNKUz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqEPLDm4jxoxn.diag
[2025-07-25 23:58:03] -rw-r--r--. 1 boincer umatlas     21353 Jul 25 23:58 stderr.txt
[2025-07-25 23:58:04] HITS file was successfully produced:
[2025-07-25 23:58:04] -rw-------. 1 boincer umatlas 211343352 Jul 25 23:55 shared/HITS.pool.root.1
[2025-07-25 23:58:04]  *** Contents of shared directory: ***
[2025-07-25 23:58:04] total 351508
[2025-07-25 23:58:04] -rw-r--r--. 2 boincer umatlas 144635303 Jul 25 12:19 ATLAS.root_0
[2025-07-25 23:58:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 12:19 start_atlas.sh
[2025-07-25 23:58:04] -rw-r--r--. 2 boincer umatlas    542890 Jul 25 12:19 input.tar.gz
[2025-07-25 23:58:04] -rw-------. 1 boincer umatlas 211343352 Jul 25 23:55 HITS.pool.root.1
[2025-07-25 23:58:04] -rw-------. 1 boincer umatlas   3399680 Jul 25 23:58 result.tar.gz
23:58:05 (3675482): run_atlas exited; CPU time 90606.325642
23:58:05 (3675482): called boinc_finish(0)

</stderr_txt>
]]>

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