Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-26 17:18:48 (80977): Detected: vboxwrapper 26206
2025-07-26 17:18:48 (80977): Detected: BOINC client v8.2.5
2025-07-26 17:18:48 (80977): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-07-26 17:18:48 (80977): Detected: Sandbox Configuration Enabled
2025-07-26 17:18:48 (80977): Successfully copied 'init_data.xml' to the shared directory.
2025-07-26 17:18:48 (80977): Create VM. (boinc_afe47090f53b5946, slot#3)
2025-07-26 17:18:48 (80977): Setting Memory Size for VM. (4400MB)
2025-07-26 17:18:48 (80977): Setting CPU Count for VM. (4)
2025-07-26 17:18:48 (80977): Setting Chipset Options for VM.
2025-07-26 17:18:48 (80977): Setting Graphics Controller Options for VM.
2025-07-26 17:18:48 (80977): Setting Boot Options for VM.
2025-07-26 17:18:48 (80977): Setting Network Configuration for NAT.
2025-07-26 17:18:48 (80977): Enabling VM Network Access.
2025-07-26 17:18:48 (80977): Disabling USB Support for VM.
2025-07-26 17:18:48 (80977): Disabling COM Port Support for VM.
2025-07-26 17:18:48 (80977): Disabling Audio Support for VM.
2025-07-26 17:18:48 (80977): Disabling Clipboard Support for VM.
2025-07-26 17:18:49 (80977): Disabling Drag and Drop Support for VM.
2025-07-26 17:18:49 (80977): Adding storage controller(s) to VM.
2025-07-26 17:18:49 (80977): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-26 17:18:50 (80977): Adding VirtualBox Guest Additions to VM.
2025-07-26 17:18:50 (80977): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-26 17:18:50 (80977): forwarding host port 51708 to guest port 80
2025-07-26 17:18:50 (80977): Enabling remote desktop for VM.
2025-07-26 17:18:50 (80977): Required extension pack not installed, remote desktop not enabled.
2025-07-26 17:18:50 (80977): Enabling shared directory for VM.
2025-07-26 17:18:50 (80977): Starting VM using VBoxManage interface. (boinc_afe47090f53b5946, slot#3)
2025-07-26 17:18:54 (80977): Successfully started VM. (PID = '81048')
2025-07-26 17:18:54 (80977): Reporting VM Process ID to BOINC.
2025-07-26 17:18:54 (80977): Guest Log: BIOS: VirtualBox 7.1.8
2025-07-26 17:18:54 (80977): Guest Log: CPUID EDX: 0x178bfbff
2025-07-26 17:18:54 (80977): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-26 17:18:54 (80977): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-26 17:18:54 (80977): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-26 17:18:54 (80977): Detected: Web Application Enabled (http://localhost:51708)
2025-07-26 17:18:54 (80977): Preference change detected
2025-07-26 17:18:54 (80977): Setting CPU throttle for VM. (50%)
2025-07-26 17:18:54 (80977): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 17:18:56 (80977): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-26 17:18:56 (80977): Guest Log: BIOS: Booting from Hard Disk...
2025-07-26 17:18:59 (80977): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 17:19:20 (80977): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-26 17:19:20 (80977): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-26 17:19:20 (80977): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-26 17:19:20 (80977): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 17:19:59 (80977): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-26 17:19:59 (80977): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-26 17:20:10 (80977): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-26 17:20:10 (80977): Guest Log: 00:00:00.000131 main     Log opened 2025-07-26T15:19:47.540778000Z
2025-07-26 17:20:10 (80977): Guest Log: 00:00:00.000217 main     OS Product: Linux
2025-07-26 17:20:10 (80977): Guest Log: 00:00:00.000253 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-26 17:20:10 (80977): Guest Log: 00:00:00.000286 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-26 17:20:10 (80977): Guest Log: 00:00:00.000320 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-26 17:20:10 (80977): Guest Log: 00:00:00.000321 main     Process ID: 1297
2025-07-26 17:20:10 (80977): Guest Log: 00:00:00.000321 main     Package type: LINUX_64BITS_GENERIC
2025-07-26 17:20:10 (80977): Guest Log: 00:00:00.001292 main     5.2.32 r132073 started. Verbose level = 0
2025-07-26 17:20:29 (80977): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-26 17:20:29 (80977): Guest Log: [INFO] Mounting shared directory
2025-07-26 17:20:29 (80977): Guest Log: [INFO] Checking for init_data.xml
2025-07-26 17:21:23 (80977): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-26 17:21:23 (80977): Guest Log: [INFO] Detected branch: prod
2025-07-26 17:21:29 (80977): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-26 17:21:29 (80977): Guest Log: Copying input files
2025-07-26 17:21:31 (80977): Guest Log: Copied input files into RunAtlas.
2025-07-26 17:21:31 (80977): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-26 17:21:31 (80977): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-26 17:21:31 (80977): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-26 17:21:31 (80977): Guest Log: Further information can be found at the LHC@home message board.
2025-07-26 17:22:21 (80977): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-26 17:22:27 (80977): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-26 17:22:27 (80977): Guest Log: 2.6.3.0 1602 1 30016 148782 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-26 17:22:28 (80977): Guest Log: copied the webapp to /var/www
2025-07-26 17:22:28 (80977): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-26 17:22:28 (80977): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-26 17:22:33 (80977): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-26 17:22:33 (80977): Guest Log:  *** Starting ATLAS job. (PandaID=6744978965 taskID=45743349) ***
2025-07-26 17:37:47 (80977): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 17:38:08 (80977): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 18:25:53 (80977): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 18:26:14 (80977): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 18:57:51 (80977): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 18:58:12 (80977): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 18:59:53 (80977): Status Report: Elapsed Time: '6000.000000'
2025-07-26 18:59:53 (80977): Status Report: CPU Time: '16231.600000'
2025-07-26 19:19:43 (80977): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 21:25:24 (80977): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 21:25:25 (80977): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 21:25:46 (80977): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 21:25:53 (80977): Guest Log: 01:58:43.328171 timesync vgsvcTimeSyncWorker: Radical host time change: 7 564 287 000 000ns (HostNow=1 753 557 934 160 000 000 ns HostLast=1 753 550 369 873 000 000 ns)
2025-07-26 21:26:03 (80977): Guest Log: 01:58:53.610220 timesync vgsvcTimeSyncWorker: Radical guest time change: 7 641 569 577 000ns (GuestNow=1 753 557 948 440 196 000 ns GuestLast=1 753 550 306 870 619 000 ns fSetTimeLastLoop=true )
2025-07-26 22:13:48 (80977): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 22:14:09 (80977): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 22:46:12 (80977): Status Report: Elapsed Time: '12000.000000'
2025-07-26 22:46:12 (80977): Status Report: CPU Time: '35504.390000'
2025-07-26 22:53:20 (80977): Guest Log:  *** Job finished ***
2025-07-26 22:53:20 (80977): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:19,913 | INFO     | all workflow threads have been joined
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:19,913 | INFO     | end of generic workflow (traces error code: 0)
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:19,913 | INFO     | traces error code: 0
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:19,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:37,154 | INFO     | PID=5987 has CPU usage=0.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:37,155 | INFO     | found 0 job(s) in 20 queues
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:37,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:37,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:37,156 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:37,156 | INFO     | [monitor] control thread has ended
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:37,263 [wrapper] ==== pilot stdout END ====
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:37,366 [wrapper] ==== wrapper stdout RESUME ====
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:37,467 [wrapper] pilotpid: 5987
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:37,546 [wrapper] Pilot exit status: 0
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:38,296 [wrapper] pandaids: 6744978965
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:38,721 [wrapper] cleanup supervisor_pilot  1279 5988
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:38,910 [wrapper] Test setup, not cleaning
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:39,015 [wrapper] apfmon messages muted
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:39,219 [wrapper] ==== wrapper stdout END ====
2025-07-26 22:53:20 (80977): Guest Log: 2025-07-26 20:52:39,519 [wrapper] ==== wrapper stderr END ====
2025-07-26 22:53:20 (80977): Guest Log:  *** Error codes and diagnostics ***
2025-07-26 22:53:20 (80977): Guest Log:     "exeErrorCode": 0,
2025-07-26 22:53:20 (80977): Guest Log:     "exeErrorDiag": "",
2025-07-26 22:53:21 (80977): Guest Log:     "pilotErrorCode": 0,
2025-07-26 22:53:21 (80977): Guest Log:     "pilotErrorDiag": "",
2025-07-26 22:53:21 (80977): Guest Log:  *** Listing of results directory ***
2025-07-26 22:53:21 (80977): Guest Log: total 207532
2025-07-26 22:53:21 (80977): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 25 09:16 pilot3.tar.gz
2025-07-26 22:53:21 (80977): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 25 09:22 queuedata.json
2025-07-26 22:53:21 (80977): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 25 09:23 runpilot2-wrapper.sh
2025-07-26 22:53:21 (80977): Guest Log: -rw-r-----. 1 atlas atlas     15095 Jul 26 15:21 start_atlas.sh
2025-07-26 22:53:21 (80977): Guest Log: -rw-r-----. 1 atlas atlas    542886 Jul 26 15:21 input.tar.gz
2025-07-26 22:53:21 (80977): Guest Log: -rw-r--r--. 1 atlas atlas      8216 Jul 26 15:21 init_data.xml
2025-07-26 22:53:21 (80977): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 26 15:21 EVNT.45743347._000989.pool.root.1 -> /data/./ATLAS.root_0
2025-07-26 22:53:21 (80977): Guest Log: -rw-r--r--. 1 atlas atlas      2562 Jul 26 15:22 pandaJob.out
2025-07-26 22:53:21 (80977): Guest Log: -rw-------. 1 atlas atlas    980133 Jul 26 15:26 agis_schedconf.cvmfs.json
2025-07-26 22:53:21 (80977): Guest Log: drwx------. 4 atlas atlas      4096 Jul 26 15:27 pilot3
2025-07-26 22:53:21 (80977): Guest Log: -rw-------. 1 atlas atlas 207764760 Jul 26 20:49 HITS.45743349._019073.pool.root.1
2025-07-26 22:53:21 (80977): Guest Log: -rw-------. 1 atlas atlas      1027 Jul 26 20:50 memory_monitor_summary.json
2025-07-26 22:53:21 (80977): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 26 20:50 agis_ddmendpoints.agis.ALL.json
2025-07-26 22:53:21 (80977): Guest Log: -rw-------. 1 atlas atlas    232241 Jul 26 20:50 log.45743349._019073.job.log.tgz.1
2025-07-26 22:53:21 (80977): Guest Log: -rw-------. 1 atlas atlas      7673 Jul 26 20:52 heartbeat.json
2025-07-26 22:53:21 (80977): Guest Log: -rw-------. 1 atlas atlas       744 Jul 26 20:52 pilotlog.txt
2025-07-26 22:53:21 (80977): Guest Log: -rw-------. 1 atlas atlas        97 Jul 26 20:52 pilot_heartbeat.json
2025-07-26 22:53:21 (80977): Guest Log: -rw-------. 1 atlas atlas    240177 Jul 26 20:52 log.45743349._019073.job.log.1
2025-07-26 22:53:21 (80977): Guest Log: -rw-------. 1 atlas atlas       357 Jul 26 20:52 output.list
2025-07-26 22:53:21 (80977): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 26 20:52 runtime_log
2025-07-26 22:53:21 (80977): Guest Log: -rw-------. 1 atlas atlas    491520 Jul 26 20:52 result.tar.gz
2025-07-26 22:53:21 (80977): Guest Log: -rw-r--r--. 1 atlas atlas      8596 Jul 26 20:52 runtime_log.err
2025-07-26 22:53:21 (80977): Guest Log: -rw-------. 1 atlas atlas       649 Jul 26 20:52 8jHMDmFpTz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQCPLDmduuDun.diag
2025-07-26 22:53:21 (80977): Guest Log: Looking for outputfile HITS.45743349._019073.pool.root.1
2025-07-26 22:53:21 (80977): Guest Log: HITS file was successfully produced
2025-07-26 22:53:21 (80977): Guest Log: -rw-------. 1 atlas atlas 207764760 Jul 26 20:49 /home/atlas/RunAtlas/HITS.45743349._019073.pool.root.1
2025-07-26 22:53:21 (80977): Guest Log: Successfully finished the ATLAS job!
2025-07-26 22:53:21 (80977): Guest Log: Copying the results back to the shared directory!
2025-07-26 22:53:23 (80977): Guest Log:  *** Contents of shared directory: ***
2025-07-26 22:53:23 (80977): Guest Log: total 143212
2025-07-26 22:53:23 (80977): Guest Log: -rw-rw----. 1 root root 145583965 Jul 26 15:18 ATLAS.root_0
2025-07-26 22:53:23 (80977): Guest Log: -rw-rw-r--. 1 root root      8216 Jul 26 15:18 init_data.xml
2025-07-26 22:53:23 (80977): Guest Log: -rw-rw----. 1 root root    542886 Jul 26 15:18 input.tar.gz
2025-07-26 22:53:23 (80977): Guest Log: -rw-r--r--. 1 root root    491520 Jul 26  2025 result.tar.gz
2025-07-26 22:53:23 (80977): Guest Log: -rw-rw----. 1 root root     15095 Jul 26 15:18 start_atlas.sh
2025-07-26 22:53:23 (80977): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-26 22:53:23 (80977): VM Completion File Detected.
2025-07-26 22:53:23 (80977): Powering off VM.
2025-07-26 22:53:23 (80977): Successfully stopped VM.
2025-07-26 22:53:23 (80977): Deregistering VM. (boinc_afe47090f53b5946, slot#3)
2025-07-26 22:53:23 (80977): Removing network bandwidth throttle group from VM.
2025-07-26 22:53:23 (80977): Removing VM from VirtualBox.
22:53:28 (80977): called boinc_finish(0)

</stderr_txt>
]]>

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