Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:39:49 (14181): wrapper (7.7.26015): starting
11:39:49 (14181): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 11:39:49] Arguments: --nthreads 12
[2025-07-25 11:39:49] Threads: 12
[2025-07-25 11:39:49] Checking for CVMFS
[2025-07-25 11:39:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 11:39:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 11:39:49] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 11:39:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 11:39:49] 2.11.2.0 3035 109267 97996 148746 1 57 14450128 20275201 1 130560 0 35393303 99.969 10044815 11051 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 11:39:49] CVMFS is ok
[2025-07-25 11:39:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 11:39:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 11:39:49] Further information can be found at the LHC@home message board.
[2025-07-25 11:39:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 11:39:49] Checking for apptainer binary...
[2025-07-25 11:39:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 11:39:49] Running /usr/bin/apptainer --version
[2025-07-25 11:39:50] apptainer version 1.3.2-1.el7
[2025-07-25 11:39:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 11:39:51] c-205-31.aglt2.org
[2025-07-25 11:39:51] apptainer works
[2025-07-25 11:39:51] Set ATHENA_PROC_NUMBER=12
[2025-07-25 11:39:51] Set ATHENA_CORE_NUMBER=12
[2025-07-25 11:39:51] Starting ATLAS job with PandaID=6744978985
[2025-07-25 11:39:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 13:02:58]  *** The last 200 lines of the pilot log: ***
[2025-07-25 13:02:58]  is_altstaged=None
[2025-07-25 13:02:58]  is_tar=False
[2025-07-25 13:02:58]  lfn=log.45743349._019093.job.log.tgz.1
[2025-07-25 13:02:58]  mtime=0
[2025-07-25 13:02:58]  protocol_id=None
[2025-07-25 13:02:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-25 13:02:58]  replicas=None
[2025-07-25 13:02:58]  scope=mc23_13p6TeV
[2025-07-25 13:02:58]  status=None
[2025-07-25 13:02:58]  status_code=0
[2025-07-25 13:02:58]  storage_token=
[2025-07-25 13:02:58]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6744978985/log.45743349._019093.job.log.tgz.1
[2025-07-25 13:02:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/b3/log.45743349._019093.job.log.tgz.1
[2025-07-25 13:02:58]  workdir=None
[2025-07-25 13:02:58] ]
[2025-07-25 13:02:58] 2025-07-25 17:02:19,745 | INFO     | transferring file log.45743349._019093.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6744978985/log.45743349._019093.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-25 13:02:58] 2025-07-25 17:02:19,745 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6744978985/log.45743349._019093.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._019093.job
[2025-07-25 13:02:58] 2025-07-25 17:02:19,766 | INFO     | adding to output.list: log.45743349._019093.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/b3/log.45743349._019093.job.log.tg
[2025-07-25 13:02:58] 2025-07-25 17:02:19,767 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 13:02:58] 2025-07-25 17:02:19,767 | INFO     | summary of transferred files:
[2025-07-25 13:02:58] 2025-07-25 17:02:19,767 | INFO     |  -- lfn=log.45743349._019093.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 13:02:58] 2025-07-25 17:02:19,768 | INFO     | stage-out finished correctly
[2025-07-25 13:02:58] 2025-07-25 17:02:20,254 | INFO     | monitor loop #370: job 0:6744978985 is in state 'finished'
[2025-07-25 13:02:58] 2025-07-25 17:02:20,254 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 13:02:58] 2025-07-25 17:02:20,515 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 13:02:58] 2025-07-25 17:02:20,722 | INFO     | job 6744978985 has state=finished
[2025-07-25 13:02:58] 2025-07-25 17:02:20,723 | INFO     | preparing for final server update for job 6744978985 in state='finished'
[2025-07-25 13:02:58] 2025-07-25 17:02:20,723 | INFO     | this job has now completed (state=finished)
[2025-07-25 13:02:58] 2025-07-25 17:02:20,724 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 13:02:58] 2025-07-25 17:02:20,724 | INFO     | log transfer has been attempted: DONE
[2025-07-25 13:02:58] 2025-07-25 17:02:20,724 | INFO     | job 6744978985 has finished - writing final server update
[2025-07-25 13:02:58] 2025-07-25 17:02:20,724 | INFO     | total number of processed events: 400 (read)
[2025-07-25 13:02:58] 2025-07-25 17:02:20,725 | INFO     | executing command: lscpu
[2025-07-25 13:02:58] 2025-07-25 17:02:20,750 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 13:02:58] 2025-07-25 17:02:22,756 | INFO     | monitor loop #371: job 0:6744978985 is in state 'finished'
[2025-07-25 13:02:58] 2025-07-25 17:02:22,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 13:02:58] 2025-07-25 17:02:25,260 | INFO     | monitor loop #372: job 0:6744978985 is in state 'finished'
[2025-07-25 13:02:58] 2025-07-25 17:02:25,260 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 13:02:58] 2025-07-25 17:02:25,752 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-25 13:02:58] 2025-07-25 17:02:25,755 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-07-25 13:02:58] 2025-07-25 17:02:25,757 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744978985/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 13:02:58] 2025-07-25 17:02:25,758 | INFO     | extracted standard info from prmon json
[2025-07-25 13:02:58] 2025-07-25 17:02:25,758 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 13:02:58] 2025-07-25 17:02:25,759 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 13:02:58] 2025-07-25 17:02:25,759 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 13:02:58] 2025-07-25 17:02:25,759 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 13:02:58] 2025-07-25 17:02:25,761 | INFO     | fitting pss+swap vs Time
[2025-07-25 13:02:58] 2025-07-25 17:02:25,762 | INFO     | sum of square deviations: 125630262.5
[2025-07-25 13:02:58] 2025-07-25 17:02:25,762 | INFO     | sum of deviations: -9456567944.0
[2025-07-25 13:02:58] 2025-07-25 17:02:25,762 | INFO     | mean x: 1753460567.5
[2025-07-25 13:02:58] 2025-07-25 17:02:25,762 | INFO     | mean y: 2797080.3513513515
[2025-07-25 13:02:58] 2025-07-25 17:02:25,763 | INFO     | -- intersect: 131991051054.49669
[2025-07-25 13:02:58] 2025-07-25 17:02:25,763 | INFO     | intersect: 131991051054.49669
[2025-07-25 13:02:58] 2025-07-25 17:02:25,763 | INFO     | chi2: 0.0944630509727317
[2025-07-25 13:02:58] 2025-07-25 17:02:25,763 | INFO     | -- intersect: 131991051054.49669
[2025-07-25 13:02:58] 2025-07-25 17:02:25,763 | INFO     | current memory leak: -75.27 B/s (using 74 data points, chi2=0.09)
[2025-07-25 13:02:58] 2025-07-25 17:02:25,764 | INFO     | could have reported an average CPU frequency of 2034 MHz (6 samples)
[2025-07-25 13:02:58] 2025-07-25 17:02:25,764 | INFO     | ..............................
[2025-07-25 13:02:58] 2025-07-25 17:02:25,764 | INFO     | . Timing measurements:
[2025-07-25 13:02:58] 2025-07-25 17:02:25,764 | INFO     | . get job = 0 s
[2025-07-25 13:02:58] 2025-07-25 17:02:25,764 | INFO     | . initial setup = 2 s
[2025-07-25 13:02:58] 2025-07-25 17:02:25,764 | INFO     | . payload setup = 9 s
[2025-07-25 13:02:58] 2025-07-25 17:02:25,765 | INFO     | . stage-in = 0 s
[2025-07-25 13:02:58] 2025-07-25 17:02:25,765 | INFO     | . payload execution = 4903 s
[2025-07-25 13:02:58] 2025-07-25 17:02:25,765 | INFO     | . stage-out = 0 s
[2025-07-25 13:02:58] 2025-07-25 17:02:25,765 | INFO     | . log creation = 0 s
[2025-07-25 13:02:58] 2025-07-25 17:02:25,765 | INFO     | ..............................
[2025-07-25 13:02:58] 2025-07-25 17:02:26,188 | INFO     | 
[2025-07-25 13:02:58] 2025-07-25 17:02:26,189 | INFO     | job summary report
[2025-07-25 13:02:58] 2025-07-25 17:02:26,189 | INFO     | --------------------------------------------------
[2025-07-25 13:02:58] 2025-07-25 17:02:26,189 | INFO     | PanDA job id: 6744978985
[2025-07-25 13:02:58] 2025-07-25 17:02:26,189 | INFO     | task id: 45743349
[2025-07-25 13:02:58] 2025-07-25 17:02:26,189 | INFO     | errors: (none)
[2025-07-25 13:02:58] 2025-07-25 17:02:26,189 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 13:02:58] 2025-07-25 17:02:26,190 | INFO     | pilot state: finished 
[2025-07-25 13:02:58] 2025-07-25 17:02:26,190 | INFO     | transexitcode: 0
[2025-07-25 13:02:58] 2025-07-25 17:02:26,190 | INFO     | exeerrorcode: 0
[2025-07-25 13:02:58] 2025-07-25 17:02:26,190 | INFO     | exeerrordiag: 
[2025-07-25 13:02:58] 2025-07-25 17:02:26,190 | INFO     | exitcode: 0
[2025-07-25 13:02:58] 2025-07-25 17:02:26,191 | INFO     | exitmsg: OK
[2025-07-25 13:02:58] 2025-07-25 17:02:26,191 | INFO     | cpuconsumptiontime: 53116 s
[2025-07-25 13:02:58] 2025-07-25 17:02:26,191 | INFO     | nevents: 400
[2025-07-25 13:02:58] 2025-07-25 17:02:26,191 | INFO     | neventsw: 0
[2025-07-25 13:02:58] 2025-07-25 17:02:26,191 | INFO     | pid: 24331
[2025-07-25 13:02:58] 2025-07-25 17:02:26,191 | INFO     | pgrp: 24331
[2025-07-25 13:02:58] 2025-07-25 17:02:26,192 | INFO     | corecount: 12
[2025-07-25 13:02:58] 2025-07-25 17:02:26,192 | INFO     | event service: False
[2025-07-25 13:02:58] 2025-07-25 17:02:26,192 | INFO     | sizes: {0: 2397302, 1: 2397501, 5: 2397763, 11: 2397819, 4917: 2424208, 4919: 2433206, 4920: 2433390, 4925: 2433584}
[2025-07-25 13:02:58] 2025-07-25 17:02:26,192 | INFO     | --------------------------------------------------
[2025-07-25 13:02:58] 2025-07-25 17:02:26,192 | INFO     | 
[2025-07-25 13:02:58] 2025-07-25 17:02:26,192 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 13:02:58] 2025-07-25 17:02:26,217 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,217 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,217 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,217 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,218 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,218 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,219 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,219 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,219 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,219 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,219 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,219 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,220 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,220 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,220 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 13:02:58] 2025-07-25 17:02:26,220 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,220 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 13:02:58] 2025-07-25 17:02:26,220 | INFO     | job 6744978985 has completed (purged errors)
[2025-07-25 13:02:58] 2025-07-25 17:02:26,221 | INFO     | overall cleanup function is called
[2025-07-25 13:02:58] 2025-07-25 17:02:27,229 | INFO     | --- collectZombieJob: --- 10, [24331]
[2025-07-25 13:02:58] 2025-07-25 17:02:27,229 | INFO     | zombie collector waiting for pid 24331
[2025-07-25 13:02:58] 2025-07-25 17:02:27,229 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 13:02:58] 2025-07-25 17:02:27,229 | INFO     | collected zombie processes
[2025-07-25 13:02:58] 2025-07-25 17:02:27,230 | INFO     | will attempt to kill all subprocesses of pid=24331
[2025-07-25 13:02:58] 2025-07-25 17:02:27,319 | INFO     | process IDs to be killed: [24331] (in reverse order)
[2025-07-25 13:02:58] 2025-07-25 17:02:27,370 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 13:02:58] 2025-07-25 17:02:27,370 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 13:02:58] 2025-07-25 17:02:27,374 | INFO     | did not find any defunct processes belonging to 24331
[2025-07-25 13:02:58] 2025-07-25 17:02:27,376 | INFO     | did not find any defunct processes belonging to 24331
[2025-07-25 13:02:58] 2025-07-25 17:02:27,377 | INFO     | ready for new job
[2025-07-25 13:02:58] 2025-07-25 17:02:27,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 13:02:58] 2025-07-25 17:02:27,378 | INFO     | ***************************************
[2025-07-25 13:02:58] 2025-07-25 17:02:27,378 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 13:02:58] 2025-07-25 17:02:27,378 | INFO     | ***************************************
[2025-07-25 13:02:58] 2025-07-25 17:02:27,378 | INFO     | 
[2025-07-25 13:02:58] 2025-07-25 17:02:27,379 | INFO     | architecture information:
[2025-07-25 13:02:58] 2025-07-25 17:02:27,379 | INFO     | executing command: cat /etc/os-release
[2025-07-25 13:02:58] 2025-07-25 17:02:27,394 | INFO     | cat /etc/os-release:
[2025-07-25 13:02:58] NAME="CentOS Linux"
[2025-07-25 13:02:58] VERSION="7 (Core)"
[2025-07-25 13:02:58] ID="centos"
[2025-07-25 13:02:58] ID_LIKE="rhel fedora"
[2025-07-25 13:02:58] VERSION_ID="7"
[2025-07-25 13:02:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 13:02:58] ANSI_COLOR="0;31"
[2025-07-25 13:02:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 13:02:58] HOME_URL="https://www.centos.org/"
[2025-07-25 13:02:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 13:02:58] 
[2025-07-25 13:02:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 13:02:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 13:02:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 13:02:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 13:02:58] 
[2025-07-25 13:02:58] 2025-07-25 17:02:27,394 | INFO     | ***************************************
[2025-07-25 13:02:58] 2025-07-25 17:02:27,898 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 13:02:58] 2025-07-25 17:02:27,914 | INFO     | sufficient remaining disk space (29512171520 B)
[2025-07-25 13:02:58] 2025-07-25 17:02:27,914 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 13:02:58] 2025-07-25 17:02:27,915 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 13:02:58] 2025-07-25 17:02:27,915 | INFO     | update_server=False
[2025-07-25 13:02:58] 2025-07-25 17:02:27,915 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 13:02:58] 2025-07-25 17:02:27,915 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 13:02:58] 2025-07-25 17:02:28,501 | INFO     | all job control threads have been joined
[2025-07-25 13:02:58] 2025-07-25 17:02:28,572 | INFO     | all data control threads have been joined
[2025-07-25 13:02:58] 2025-07-25 17:02:28,762 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 13:02:58] 2025-07-25 17:02:28,762 | INFO     | aborting loop
[2025-07-25 13:02:58] 2025-07-25 17:02:28,916 | INFO     | [job] retrieve thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:28,946 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:29,197 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:29,366 | INFO     | [payload] failed_post thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:29,397 | INFO     | all payload control threads have been joined
[2025-07-25 13:02:58] 2025-07-25 17:02:29,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:29,506 | INFO     | [job] control thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:29,578 | INFO     | [data] control thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:29,676 | INFO     | [data] copytool_in thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:29,767 | INFO     | [job] job monitor thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:29,921 | INFO     | [data] copytool_out thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:30,024 | INFO     | [payload] validate_post thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:30,225 | INFO     | [job] validate thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:30,368 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:30,402 | INFO     | [payload] control thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:30,858 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 13:02:58] 2025-07-25 17:02:31,106 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 13:02:58] 2025-07-25 17:02:31,859 | INFO     | [job] queue monitor thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:35,112 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 13:02:58] 2025-07-25 17:02:36,384 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140574131402560)>', '<ExcThread(monitor, started 140573256177408)>']
[2025-07-25 13:02:58] 2025-07-25 17:02:41,408 | INFO     | all workflow threads have been joined
[2025-07-25 13:02:58] 2025-07-25 17:02:41,408 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 13:02:58] 2025-07-25 17:02:41,408 | INFO     | traces error code: 0
[2025-07-25 13:02:58] 2025-07-25 17:02:41,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 13:02:58] 2025-07-25 17:02:58,114 | INFO     | PID=17792 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-25 13:02:58] 2025-07-25 17:02:58,114 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 13:02:58] 2025-07-25 17:02:58,114 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 13:02:58] 2025-07-25 17:02:58,114 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 13:02:58] 2025-07-25 17:02:58,114 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 13:02:58] 2025-07-25 17:02:58,115 | INFO     | [monitor] control thread has ended
[2025-07-25 13:02:58] 2025-07-25 17:02:58,206 [wrapper] ==== pilot stdout END ====
[2025-07-25 13:02:58] 2025-07-25 17:02:58,210 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 13:02:58] 2025-07-25 17:02:58,215 [wrapper] pilotpid: 17792
[2025-07-25 13:02:58] 2025-07-25 17:02:58,218 [wrapper] Pilot exit status: 0
[2025-07-25 13:02:58] 2025-07-25 17:02:58,235 [wrapper] pandaids: 6744978985
[2025-07-25 13:02:58] 2025-07-25 17:02:58,273 [wrapper] cleanup supervisor_pilot 16491 17793
[2025-07-25 13:02:58] 2025-07-25 17:02:58,277 [wrapper] Test setup, not cleaning
[2025-07-25 13:02:58] 2025-07-25 17:02:58,281 [wrapper] apfmon messages muted
[2025-07-25 13:02:58] 2025-07-25 17:02:58,285 [wrapper] ==== wrapper stdout END ====
[2025-07-25 13:02:58] 2025-07-25 17:02:58,288 [wrapper] ==== wrapper stderr END ====
[2025-07-25 13:02:58]  *** Error codes and diagnostics ***
[2025-07-25 13:02:58]     "exeErrorCode": 0,
[2025-07-25 13:02:58]     "exeErrorDiag": "",
[2025-07-25 13:02:58]     "pilotErrorCode": 0,
[2025-07-25 13:02:58]     "pilotErrorDiag": "",
[2025-07-25 13:02:58]  *** Listing of results directory ***
[2025-07-25 13:02:58] total 354540
[2025-07-25 13:02:58] -rw-r--r-- 1 boincer umatlas    530466 Jul 25 05:16 pilot3.tar.gz
[2025-07-25 13:02:58] -rw-r--r-- 1 boincer umatlas      5112 Jul 25 05:22 queuedata.json
[2025-07-25 13:02:58] -rwx------ 1 boincer umatlas     36292 Jul 25 05:23 runpilot2-wrapper.sh
[2025-07-25 13:02:58] -rw-r--r-- 1 boincer umatlas       100 Jul 25 11:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 13:02:58] -rwxr-xr-x 1 boincer umatlas      7986 Jul 25 11:39 run_atlas
[2025-07-25 13:02:58] -rw-r--r-- 1 boincer umatlas       105 Jul 25 11:39 job.xml
[2025-07-25 13:02:58] -rw-r--r-- 2 boincer umatlas 147232311 Jul 25 11:39 EVNT.45743347._000991.pool.root.1
[2025-07-25 13:02:58] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 11:39 start_atlas.sh
[2025-07-25 13:02:58] drwxrwx--x 2 boincer umatlas      4096 Jul 25 11:39 shared
[2025-07-25 13:02:58] -rw-r--r-- 2 boincer umatlas    542890 Jul 25 11:39 input.tar.gz
[2025-07-25 13:02:58] -rw-r--r-- 1 boincer umatlas         0 Jul 25 11:39 boinc_lockfile
[2025-07-25 13:02:58] -rw-r--r-- 1 boincer umatlas      2562 Jul 25 11:39 pandaJob.out
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas    979317 Jul 25 11:40 agis_schedconf.cvmfs.json
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas   1593052 Jul 25 11:40 agis_ddmendpoints.agis.ALL.json
[2025-07-25 13:02:58] drwx------ 4 boincer umatlas      4096 Jul 25 11:40 pilot3
[2025-07-25 13:02:58] -rw-r--r-- 1 boincer umatlas      5868 Jul 25 13:00 init_data.xml
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas 210282726 Jul 25 13:01 HITS.45743349._019093.pool.root.1
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas        95 Jul 25 13:02 pilot_heartbeat.json
[2025-07-25 13:02:58] -rw-r--r-- 1 boincer umatlas       530 Jul 25 13:02 boinc_task_state.xml
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas      1051 Jul 25 13:02 memory_monitor_summary.json
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas    356400 Jul 25 13:02 log.45743349._019093.job.log.tgz.1
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas      7854 Jul 25 13:02 heartbeat.json
[2025-07-25 13:02:58] -rw-r--r-- 1 boincer umatlas      8192 Jul 25 13:02 boinc_mmap_file
[2025-07-25 13:02:58] -rw-r--r-- 1 boincer umatlas        27 Jul 25 13:02 wrapper_checkpoint.txt
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas       745 Jul 25 13:02 pilotlog.txt
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas    470970 Jul 25 13:02 log.45743349._019093.job.log.1
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas       357 Jul 25 13:02 output.list
[2025-07-25 13:02:58] -rw-r--r-- 1 boincer umatlas       620 Jul 25 13:02 runtime_log
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas    849920 Jul 25 13:02 result.tar.gz
[2025-07-25 13:02:58] -rw-r--r-- 1 boincer umatlas      8662 Jul 25 13:02 runtime_log.err
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas       659 Jul 25 13:02 FlGODmApTz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmACPLDmPPM0Kn.diag
[2025-07-25 13:02:58] -rw-r--r-- 1 boincer umatlas     21510 Jul 25 13:02 stderr.txt
[2025-07-25 13:02:58] HITS file was successfully produced:
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas 210282726 Jul 25 13:01 shared/HITS.pool.root.1
[2025-07-25 13:02:58]  *** Contents of shared directory: ***
[2025-07-25 13:02:58] total 350524
[2025-07-25 13:02:58] -rw-r--r-- 2 boincer umatlas 147232311 Jul 25 11:39 ATLAS.root_0
[2025-07-25 13:02:58] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 11:39 start_atlas.sh
[2025-07-25 13:02:58] -rw-r--r-- 2 boincer umatlas    542890 Jul 25 11:39 input.tar.gz
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas 210282726 Jul 25 13:01 HITS.pool.root.1
[2025-07-25 13:02:58] -rw------- 1 boincer umatlas    849920 Jul 25 13:02 result.tar.gz
13:02:59 (14181): run_atlas exited; CPU time 53083.269412
13:02:59 (14181): called boinc_finish(0)

</stderr_txt>
]]>

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