Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:38:46 (714237): wrapper (7.7.26015): starting
11:38:46 (714237): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 11:38:46] Arguments: --nthreads 8
[2025-07-25 11:38:46] Threads: 8
[2025-07-25 11:38:46] Checking for CVMFS
[2025-07-25 11:38:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 11:38:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 11:38:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 11:38:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 11:38:46] 2.13.0.0 2191370 15691 299616 148746 0 432 25501781 32935936 22543 16776704 0 80316198 99.512 134464624 18720 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 11:38:46] CVMFS is ok
[2025-07-25 11:38:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 11:38:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 11:38:46] Further information can be found at the LHC@home message board.
[2025-07-25 11:38:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 11:38:46] Checking for apptainer binary...
[2025-07-25 11:38:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 11:38:46] Running /usr/bin/apptainer --version
[2025-07-25 11:38:46] apptainer version 1.4.1-1.el9
[2025-07-25 11:38:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 11:38:47] c7-2-14.aglt2.org
[2025-07-25 11:38:47] apptainer works
[2025-07-25 11:38:47] Set ATHENA_PROC_NUMBER=8
[2025-07-25 11:38:47] Set ATHENA_CORE_NUMBER=8
[2025-07-25 11:38:47] Starting ATLAS job with PandaID=6744978464
[2025-07-25 11:38:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 13:37:13]  *** The last 200 lines of the pilot log: ***
[2025-07-25 13:37:13] 2025-07-25 17:36:37,893 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 13:37:13] 2025-07-25 17:36:37,893 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 13:37:13] 2025-07-25 17:36:37,896 | INFO     | fitting pss+swap vs Time
[2025-07-25 13:37:13] 2025-07-25 17:36:37,898 | INFO     | sufficient remaining disk space (75944165376 B)
[2025-07-25 13:37:13] 2025-07-25 17:36:37,899 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-25 13:37:13] 2025-07-25 17:36:37,900 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6744978464: 3450743 B (within 2537553920 B limit)
[2025-07-25 13:37:13] 2025-07-25 17:36:37,900 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6744978464/HITS.45743349._018946.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-25 13:37:13] 2025-07-25 17:36:37,900 | INFO     | total size of present files: 0 B (workdir size: 3450743 B)
[2025-07-25 13:37:13] 2025-07-25 17:36:37,900 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6744978464/HITS.45743349._018946.pool.root.1 since it does not exist
[2025-07-25 13:37:13] 2025-07-25 17:36:37,899 | INFO     | sum of square deviations: 471560622.99130464
[2025-07-25 13:37:13] 2025-07-25 17:36:37,903 | INFO     | sum of deviations: -6215218992.069565
[2025-07-25 13:37:13] 2025-07-25 17:36:37,903 | INFO     | mean x: 1753461463.0086956
[2025-07-25 13:37:13] 2025-07-25 17:36:37,903 | INFO     | mean y: 2283154.0695652175
[2025-07-25 13:37:13] 2025-07-25 17:36:37,903 | INFO     | -- intersect: 23113091087.14562
[2025-07-25 13:37:13] 2025-07-25 17:36:37,903 | INFO     | intersect: 23113091087.14562
[2025-07-25 13:37:13] 2025-07-25 17:36:37,903 | INFO     | chi2: 1.9352428896466762
[2025-07-25 13:37:13] 2025-07-25 17:36:37,904 | INFO     | sum of square deviations: 412685405.4909094
[2025-07-25 13:37:13] 2025-07-25 17:36:37,904 | INFO     | sum of deviations: -5515291431.927272
[2025-07-25 13:37:13] 2025-07-25 17:36:37,904 | INFO     | mean x: 1753461310.509091
[2025-07-25 13:37:13] 2025-07-25 17:36:37,904 | INFO     | mean y: 2284965.9272727272
[2025-07-25 13:37:13] 2025-07-25 17:36:37,904 | INFO     | -- intersect: 23436237350.462914
[2025-07-25 13:37:13] 2025-07-25 17:36:37,904 | INFO     | intersect: 23436237350.462914
[2025-07-25 13:37:13] 2025-07-25 17:36:37,905 | INFO     | chi2: 1.9338265563841124
[2025-07-25 13:37:13] 2025-07-25 17:36:37,905 | INFO     | current chi2=1.9338265563841124 (change=0.07318633077744759 %)
[2025-07-25 13:37:13] 2025-07-25 17:36:37,905 | INFO     | right removable region: 109
[2025-07-25 13:37:13] 2025-07-25 17:36:37,905 | INFO     | sum of square deviations: 412684795.4909094
[2025-07-25 13:37:13] 2025-07-25 17:36:37,906 | INFO     | sum of deviations: -23676542627.672718
[2025-07-25 13:37:13] 2025-07-25 17:36:37,906 | INFO     | mean x: 1753461615.509091
[2025-07-25 13:37:13] 2025-07-25 17:36:37,906 | INFO     | mean y: 2327601.172727273
[2025-07-25 13:37:13] 2025-07-25 17:36:37,906 | INFO     | -- intersect: 100601887214.71165
[2025-07-25 13:37:13] 2025-07-25 17:36:37,906 | INFO     | intersect: 100601887214.71165
[2025-07-25 13:37:13] 2025-07-25 17:36:37,907 | INFO     | chi2: 0.2329980887440645
[2025-07-25 13:37:13] 2025-07-25 17:36:37,907 | INFO     | current chi2=0.2329980887440645 (change=87.96026638358538 %)
[2025-07-25 13:37:13] 2025-07-25 17:36:37,907 | INFO     | sum of square deviations: 358925342.9904774
[2025-07-25 13:37:13] 2025-07-25 17:36:37,907 | INFO     | sum of deviations: -20420166728.0
[2025-07-25 13:37:13] 2025-07-25 17:36:37,907 | INFO     | mean x: 1753461768.0095239
[2025-07-25 13:37:13] 2025-07-25 17:36:37,907 | INFO     | mean y: 2318270.0
[2025-07-25 13:37:13] 2025-07-25 17:36:37,908 | INFO     | -- intersect: 99761174403.14883
[2025-07-25 13:37:13] 2025-07-25 17:36:37,908 | INFO     | intersect: 99761174403.14883
[2025-07-25 13:37:13] 2025-07-25 17:36:37,908 | INFO     | chi2: 0.22642952843320577
[2025-07-25 13:37:13] 2025-07-25 17:36:37,908 | INFO     | current chi2=0.22642952843320577 (change=2.8191477218827874 %)
[2025-07-25 13:37:13] 2025-07-25 17:36:37,908 | INFO     | left removable region: 20
[2025-07-25 13:37:13] 2025-07-25 17:36:37,908 | INFO     | sum of square deviations: 218568978.98876375
[2025-07-25 13:37:13] 2025-07-25 17:36:37,908 | INFO     | sum of deviations: -11161690424.51685
[2025-07-25 13:37:13] 2025-07-25 17:36:37,909 | INFO     | mean x: 1753461890.011236
[2025-07-25 13:37:13] 2025-07-25 17:36:37,909 | INFO     | mean y: 2293439.5168539328
[2025-07-25 13:37:13] 2025-07-25 17:36:37,909 | INFO     | -- intersect: 89546559410.12274
[2025-07-25 13:37:13] 2025-07-25 17:36:37,909 | INFO     | intersect: 89546559410.12274
[2025-07-25 13:37:13] 2025-07-25 17:36:37,909 | INFO     | chi2: 0.19195804366266228
[2025-07-25 13:37:13] 2025-07-25 17:36:37,909 | INFO     | -- intersect: 89546559410.12274
[2025-07-25 13:37:13] 2025-07-25 17:36:37,909 | INFO     | current memory leak: -51.07 B/s (using 89 data points, chi2=0.19)
[2025-07-25 13:37:13] 2025-07-25 17:36:37,910 | INFO     | could have reported an average CPU frequency of 3204 MHz (7 samples)
[2025-07-25 13:37:13] 2025-07-25 17:36:37,910 | INFO     | ..............................
[2025-07-25 13:37:13] 2025-07-25 17:36:37,910 | INFO     | . Timing measurements:
[2025-07-25 13:37:13] 2025-07-25 17:36:37,910 | INFO     | . get job = 0 s
[2025-07-25 13:37:13] 2025-07-25 17:36:37,910 | INFO     | . initial setup = 3 s
[2025-07-25 13:37:13] 2025-07-25 17:36:37,910 | INFO     | . payload setup = 12 s
[2025-07-25 13:37:13] 2025-07-25 17:36:37,910 | INFO     | . stage-in = 0 s
[2025-07-25 13:37:13] 2025-07-25 17:36:37,910 | INFO     | . payload execution = 7001 s
[2025-07-25 13:37:13] 2025-07-25 17:36:37,910 | INFO     | . stage-out = 1 s
[2025-07-25 13:37:13] 2025-07-25 17:36:37,911 | INFO     | . log creation = 0 s
[2025-07-25 13:37:13] 2025-07-25 17:36:37,911 | INFO     | ..............................
[2025-07-25 13:37:13] 2025-07-25 17:36:38,021 | INFO     | 
[2025-07-25 13:37:13] 2025-07-25 17:36:38,027 | INFO     | job summary report
[2025-07-25 13:37:13] 2025-07-25 17:36:38,028 | INFO     | --------------------------------------------------
[2025-07-25 13:37:13] 2025-07-25 17:36:38,028 | INFO     | PanDA job id: 6744978464
[2025-07-25 13:37:13] 2025-07-25 17:36:38,029 | INFO     | task id: 45743349
[2025-07-25 13:37:13] 2025-07-25 17:36:38,036 | INFO     | errors: (none)
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | pilot state: finished 
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | transexitcode: 0
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | exeerrorcode: 0
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | exeerrordiag: 
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | exitcode: 0
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | exitmsg: OK
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | cpuconsumptiontime: 35362 s
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | nevents: 400
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | neventsw: 0
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | pid: 735426
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | pgrp: 735426
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | corecount: 8
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | event service: False
[2025-07-25 13:37:13] 2025-07-25 17:36:38,037 | INFO     | sizes: {0: 2397473, 11: 2397763, 7018: 2425105, 7020: 2434103, 7021: 2434159, 7033: 2434381}
[2025-07-25 13:37:13] 2025-07-25 17:36:38,038 | INFO     | --------------------------------------------------
[2025-07-25 13:37:13] 2025-07-25 17:36:38,038 | INFO     | 
[2025-07-25 13:37:13] 2025-07-25 17:36:38,038 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 13:37:13] 2025-07-25 17:36:38,122 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,122 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,122 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,122 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,122 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,122 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,123 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 13:37:13] 2025-07-25 17:36:38,124 | INFO     | job 6744978464 has completed (purged errors)
[2025-07-25 13:37:13] 2025-07-25 17:36:38,124 | INFO     | overall cleanup function is called
[2025-07-25 13:37:13] 2025-07-25 17:36:38,560 | INFO     | number of running child processes to parent process 735426: 1
[2025-07-25 13:37:13] 2025-07-25 17:36:38,560 | INFO     | maximum number of monitored processes: 6
[2025-07-25 13:37:13] 2025-07-25 17:36:38,561 | INFO     | aborting job monitoring since job object (job id=6744978464) has expired
[2025-07-25 13:37:13] 2025-07-25 17:36:39,137 | INFO     | --- collectZombieJob: --- 10, [735426]
[2025-07-25 13:37:13] 2025-07-25 17:36:39,137 | INFO     | zombie collector waiting for pid 735426
[2025-07-25 13:37:13] 2025-07-25 17:36:39,137 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 13:37:13] 2025-07-25 17:36:39,137 | INFO     | collected zombie processes
[2025-07-25 13:37:13] 2025-07-25 17:36:39,137 | INFO     | will attempt to kill all subprocesses of pid=735426
[2025-07-25 13:37:13] 2025-07-25 17:36:39,599 | INFO     | process IDs to be killed: [735426] (in reverse order)
[2025-07-25 13:37:13] 2025-07-25 17:36:39,739 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 13:37:13] 2025-07-25 17:36:39,740 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 13:37:13] 2025-07-25 17:36:39,760 | INFO     | did not find any defunct processes belonging to 735426
[2025-07-25 13:37:13] 2025-07-25 17:36:39,778 | INFO     | did not find any defunct processes belonging to 735426
[2025-07-25 13:37:13] 2025-07-25 17:36:39,778 | INFO     | ready for new job
[2025-07-25 13:37:13] 2025-07-25 17:36:39,778 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 13:37:13] 2025-07-25 17:36:39,780 | INFO     | ***************************************
[2025-07-25 13:37:13] 2025-07-25 17:36:39,780 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 13:37:13] 2025-07-25 17:36:39,780 | INFO     | ***************************************
[2025-07-25 13:37:13] 2025-07-25 17:36:39,780 | INFO     | 
[2025-07-25 13:37:13] 2025-07-25 17:36:39,822 | INFO     | architecture information:
[2025-07-25 13:37:13] 2025-07-25 17:36:39,822 | INFO     | executing command: cat /etc/os-release
[2025-07-25 13:37:13] 2025-07-25 17:36:39,929 | INFO     | cat /etc/os-release:
[2025-07-25 13:37:13] NAME="CentOS Linux"
[2025-07-25 13:37:13] VERSION="7 (Core)"
[2025-07-25 13:37:13] ID="centos"
[2025-07-25 13:37:13] ID_LIKE="rhel fedora"
[2025-07-25 13:37:13] VERSION_ID="7"
[2025-07-25 13:37:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 13:37:13] ANSI_COLOR="0;31"
[2025-07-25 13:37:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 13:37:13] HOME_URL="https://www.centos.org/"
[2025-07-25 13:37:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 13:37:13] 
[2025-07-25 13:37:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 13:37:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 13:37:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 13:37:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 13:37:13] 
[2025-07-25 13:37:13] 2025-07-25 17:36:39,930 | INFO     | ***************************************
[2025-07-25 13:37:13] 2025-07-25 17:36:40,433 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 13:37:13] 2025-07-25 17:36:40,543 | INFO     | sufficient remaining disk space (75946262528 B)
[2025-07-25 13:37:13] 2025-07-25 17:36:40,543 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 13:37:13] 2025-07-25 17:36:40,543 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 13:37:13] 2025-07-25 17:36:40,543 | INFO     | update_server=False
[2025-07-25 13:37:13] 2025-07-25 17:36:40,544 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 13:37:13] 2025-07-25 17:36:40,544 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 13:37:13] 2025-07-25 17:36:40,549 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 13:37:13] 2025-07-25 17:36:40,550 | INFO     | aborting loop
[2025-07-25 13:37:13] 2025-07-25 17:36:41,059 | INFO     | all payload control threads have been joined
[2025-07-25 13:37:13] 2025-07-25 17:36:41,226 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 13:37:13] 2025-07-25 17:36:41,550 | INFO     | [job] retrieve thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:41,556 | INFO     | [job] job monitor thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:41,631 | INFO     | all data control threads have been joined
[2025-07-25 13:37:13] 2025-07-25 17:36:41,773 | INFO     | [job] validate thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:41,852 | INFO     | all job control threads have been joined
[2025-07-25 13:37:13] 2025-07-25 17:36:42,065 | INFO     | [payload] control thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:42,141 | INFO     | [data] copytool_in thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:42,167 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:42,236 | INFO     | [payload] validate_post thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:42,552 | INFO     | [data] copytool_out thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:42,602 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:42,639 | INFO     | [data] control thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:42,859 | INFO     | [job] control thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:42,895 | INFO     | [payload] failed_post thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:42,966 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:43,034 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 13:37:13] 2025-07-25 17:36:44,039 | INFO     | [job] queue monitor thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:45,236 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:51,104 | INFO     | job.realtimelogging is not enabled
[2025-07-25 13:37:13] 2025-07-25 17:36:52,111 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 13:37:13] 2025-07-25 17:36:53,554 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140167479355200)>', '<ExcThread(monitor, started 140166853289728)>']
[2025-07-25 13:37:13] 2025-07-25 17:36:58,579 | INFO     | all workflow threads have been joined
[2025-07-25 13:37:13] 2025-07-25 17:36:58,580 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 13:37:13] 2025-07-25 17:36:58,580 | INFO     | traces error code: 0
[2025-07-25 13:37:13] 2025-07-25 17:36:58,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 13:37:13] 2025-07-25 17:37:12,589 | INFO     | PID=719950 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-25 13:37:13] 2025-07-25 17:37:12,590 | INFO     | .. there are 28 such processes running
[2025-07-25 13:37:13] 2025-07-25 17:37:12,590 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 13:37:13] 2025-07-25 17:37:12,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 13:37:13] 2025-07-25 17:37:12,590 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 13:37:13] 2025-07-25 17:37:12,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 13:37:13] 2025-07-25 17:37:12,590 | INFO     | [monitor] control thread has ended
[2025-07-25 13:37:13] 2025-07-25 17:37:12,754 [wrapper] ==== pilot stdout END ====
[2025-07-25 13:37:13] 2025-07-25 17:37:12,756 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 13:37:13] 2025-07-25 17:37:12,759 [wrapper] pilotpid: 719950
[2025-07-25 13:37:13] 2025-07-25 17:37:12,761 [wrapper] Pilot exit status: 0
[2025-07-25 13:37:13] 2025-07-25 17:37:12,780 [wrapper] pandaids: 6744978464
[2025-07-25 13:37:13] 2025-07-25 17:37:12,883 [wrapper] cleanup supervisor_pilot 1250452 719951
[2025-07-25 13:37:13] 2025-07-25 17:37:12,886 [wrapper] Test setup, not cleaning
[2025-07-25 13:37:13] 2025-07-25 17:37:12,893 [wrapper] apfmon messages muted
[2025-07-25 13:37:13] 2025-07-25 17:37:12,896 [wrapper] ==== wrapper stdout END ====
[2025-07-25 13:37:13] 2025-07-25 17:37:12,907 [wrapper] ==== wrapper stderr END ====
[2025-07-25 13:37:13]  *** Error codes and diagnostics ***
[2025-07-25 13:37:13]     "exeErrorCode": 0,
[2025-07-25 13:37:13]     "exeErrorDiag": "",
[2025-07-25 13:37:13]     "pilotErrorCode": 0,
[2025-07-25 13:37:13]     "pilotErrorDiag": "",
[2025-07-25 13:37:13]  *** Listing of results directory ***
[2025-07-25 13:37:13] total 348720
[2025-07-25 13:37:13] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 05:04 pilot3.tar.gz
[2025-07-25 13:37:13] -rwx------. 1 boincer umatlas     36292 Jul 25 05:14 runpilot2-wrapper.sh
[2025-07-25 13:37:13] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 05:14 queuedata.json
[2025-07-25 13:37:13] -rw-r--r--. 1 boincer umatlas       100 Jul 25 11:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 13:37:13] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 11:38 run_atlas
[2025-07-25 13:37:13] -rw-r--r--. 1 boincer umatlas       105 Jul 25 11:38 job.xml
[2025-07-25 13:37:13] -rw-r--r--. 2 boincer umatlas 143965427 Jul 25 11:38 EVNT.45743347._000981.pool.root.1
[2025-07-25 13:37:13] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 11:38 start_atlas.sh
[2025-07-25 13:37:13] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 11:38 shared
[2025-07-25 13:37:13] -rw-r--r--. 2 boincer umatlas    542886 Jul 25 11:38 input.tar.gz
[2025-07-25 13:37:13] -rw-r--r--. 1 boincer umatlas         0 Jul 25 11:38 boinc_lockfile
[2025-07-25 13:37:13] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 11:38 pandaJob.out
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas    979317 Jul 25 11:39 agis_schedconf.cvmfs.json
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas   1593052 Jul 25 11:39 agis_ddmendpoints.agis.ALL.json
[2025-07-25 13:37:13] drwx------. 4 boincer umatlas      4096 Jul 25 11:39 pilot3
[2025-07-25 13:37:13] -rw-r--r--. 1 boincer umatlas      6933 Jul 25 13:31 init_data.xml
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas 207323711 Jul 25 13:35 HITS.45743349._018946.pool.root.1
[2025-07-25 13:37:13] -rw-r--r--. 1 boincer umatlas       529 Jul 25 13:35 boinc_task_state.xml
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas        95 Jul 25 13:36 pilot_heartbeat.json
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas      1031 Jul 25 13:36 memory_monitor_summary.json
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas    322769 Jul 25 13:36 log.45743349._018946.job.log.tgz.1
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas      7771 Jul 25 13:36 heartbeat.json
[2025-07-25 13:37:13] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 13:37 boinc_mmap_file
[2025-07-25 13:37:13] -rw-r--r--. 1 boincer umatlas        27 Jul 25 13:37 wrapper_checkpoint.txt
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas       822 Jul 25 13:37 pilotlog.txt
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas    637642 Jul 25 13:37 log.45743349._018946.job.log.1
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas       357 Jul 25 13:37 output.list
[2025-07-25 13:37:13] -rw-r--r--. 1 boincer umatlas       620 Jul 25 13:37 runtime_log
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas    983040 Jul 25 13:37 result.tar.gz
[2025-07-25 13:37:13] -rw-r--r--. 1 boincer umatlas      8655 Jul 25 13:37 runtime_log.err
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas       651 Jul 25 13:37 A3xNDmRgTz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3APLDm4po6Vm.diag
[2025-07-25 13:37:13] -rw-r--r--. 1 boincer umatlas     21376 Jul 25 13:37 stderr.txt
[2025-07-25 13:37:13] HITS file was successfully produced:
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas 207323711 Jul 25 13:35 shared/HITS.pool.root.1
[2025-07-25 13:37:13]  *** Contents of shared directory: ***
[2025-07-25 13:37:13] total 344576
[2025-07-25 13:37:13] -rw-r--r--. 2 boincer umatlas 143965427 Jul 25 11:38 ATLAS.root_0
[2025-07-25 13:37:13] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 11:38 start_atlas.sh
[2025-07-25 13:37:13] -rw-r--r--. 2 boincer umatlas    542886 Jul 25 11:38 input.tar.gz
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas 207323711 Jul 25 13:35 HITS.pool.root.1
[2025-07-25 13:37:13] -rw-------. 1 boincer umatlas    983040 Jul 25 13:37 result.tar.gz
13:37:14 (714237): run_atlas exited; CPU time 35594.474922
13:37:14 (714237): called boinc_finish(0)

</stderr_txt>
]]>

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