Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:32:43 (3721512): wrapper (7.7.26015): starting
11:32:43 (3721512): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 11:32:43] Arguments: --nthreads 8
[2025-07-25 11:32:43] Threads: 8
[2025-07-25 11:32:43] Checking for CVMFS
[2025-07-25 11:32:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 11:32:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 11:32:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 11:32:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 11:32:44] 2.13.1.0 116762 5698 189040 148746 3 188 34153524 40960000 12040 16776704 0 71678806 99.998 238752 35100 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 11:32:44] CVMFS is ok
[2025-07-25 11:32:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 11:32:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 11:32:44] Further information can be found at the LHC@home message board.
[2025-07-25 11:32:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 11:32:44] Checking for apptainer binary...
[2025-07-25 11:32:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 11:32:44] Running /usr/bin/apptainer --version
[2025-07-25 11:32:44] apptainer version 1.4.1-1.el9
[2025-07-25 11:32:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 11:32:44] c-208-39.aglt2.org
[2025-07-25 11:32:44] apptainer works
[2025-07-25 11:32:44] Set ATHENA_PROC_NUMBER=8
[2025-07-25 11:32:44] Set ATHENA_CORE_NUMBER=8
[2025-07-25 11:32:44] Starting ATLAS job with PandaID=6744978357
[2025-07-25 11:32:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 12:31:07]  *** The last 200 lines of the pilot log: ***
[2025-07-25 12:31:07]  scope=mc23_13p6TeV
[2025-07-25 12:31:07]  status=None
[2025-07-25 12:31:07]  status_code=0
[2025-07-25 12:31:07]  storage_token=
[2025-07-25 12:31:07]  surl=/tmp/boinchome/slots/13/PanDA_Pilot-6744978357/log.45743349._018839.job.log.tgz.1
[2025-07-25 12:31:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/a9/log.45743349._018839.job.log.tgz.1
[2025-07-25 12:31:07]  workdir=None
[2025-07-25 12:31:07] ]
[2025-07-25 12:31:07] 2025-07-25 16:30:24,149 | INFO     | transferring file log.45743349._018839.job.log.tgz.1 from /tmp/boinchome/slots/13/PanDA_Pilot-6744978357/log.45743349._018839.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-25 12:31:07] 2025-07-25 16:30:24,150 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/13/PanDA_Pilot-6744978357/log.45743349._018839.job.log.tgz.1 /tmp/boinchome/slots/13/log.45743349._018839.j
[2025-07-25 12:31:07] 2025-07-25 16:30:24,168 | INFO     | adding to output.list: log.45743349._018839.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/a9/log.45743349._018839.job.log.tg
[2025-07-25 12:31:07] 2025-07-25 16:30:24,169 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 12:31:07] 2025-07-25 16:30:24,169 | INFO     | summary of transferred files:
[2025-07-25 12:31:07] 2025-07-25 16:30:24,169 | INFO     |  -- lfn=log.45743349._018839.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 12:31:07] 2025-07-25 16:30:24,169 | INFO     | stage-out finished correctly
[2025-07-25 12:31:07] 2025-07-25 16:30:24,643 | INFO     | PID=3725240 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 12:31:07] 2025-07-25 16:30:24,643 | INFO     | .. there are 16 such processes running
[2025-07-25 12:31:07] 2025-07-25 16:30:26,821 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 12:31:07] 2025-07-25 16:30:26,875 | INFO     | job 6744978357 has state=finished
[2025-07-25 12:31:07] 2025-07-25 16:30:26,875 | INFO     | preparing for final server update for job 6744978357 in state='finished'
[2025-07-25 12:31:07] 2025-07-25 16:30:26,876 | INFO     | this job has now completed (state=finished)
[2025-07-25 12:31:07] 2025-07-25 16:30:26,876 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 12:31:07] 2025-07-25 16:30:26,876 | INFO     | log transfer has been attempted: DONE
[2025-07-25 12:31:07] 2025-07-25 16:30:26,876 | INFO     | job 6744978357 has finished - writing final server update
[2025-07-25 12:31:07] 2025-07-25 16:30:26,876 | INFO     | total number of processed events: 400 (read)
[2025-07-25 12:31:07] 2025-07-25 16:30:26,876 | INFO     | executing command: lscpu
[2025-07-25 12:31:07] 2025-07-25 16:30:26,930 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 12:31:07] 2025-07-25 16:30:27,409 | WARNING  | process 3743265 can no longer be monitored (due to stat problems) - aborting
[2025-07-25 12:31:07] 2025-07-25 16:30:27,410 | INFO     | using path: /tmp/boinchome/slots/13/PanDA_Pilot-6744978357/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 12:31:07] 2025-07-25 16:30:27,760 | INFO     | number of running child processes to parent process 3743265: 1
[2025-07-25 12:31:07] 2025-07-25 16:30:27,760 | INFO     | maximum number of monitored processes: 6
[2025-07-25 12:31:07] 2025-07-25 16:30:30,263 | INFO     | monitor loop #249: job 0:6744978357 is in state 'finished'
[2025-07-25 12:31:07] 2025-07-25 16:30:30,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 12:31:07] 2025-07-25 16:30:30,486 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-25 12:31:07] 2025-07-25 16:30:30,491 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3687.9644687500013
[2025-07-25 12:31:07] 2025-07-25 16:30:30,504 | INFO     | using path: /tmp/boinchome/slots/13/PanDA_Pilot-6744978357/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 12:31:07] 2025-07-25 16:30:30,504 | INFO     | extracted standard info from prmon json
[2025-07-25 12:31:07] 2025-07-25 16:30:30,504 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 12:31:07] 2025-07-25 16:30:30,504 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 12:31:07] 2025-07-25 16:30:30,504 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 12:31:07] 2025-07-25 16:30:30,504 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 12:31:07] 2025-07-25 16:30:30,505 | INFO     | fitting pss+swap vs Time
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | sum of square deviations: 38744912.5
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | sum of deviations: -179014626.0
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | mean x: 1753459396.5
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | mean y: 2526442.16
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | -- intersect: 8104103083.238573
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | intersect: 8104103083.238573
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | chi2: 0.0007044230212968656
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | -- intersect: 8104103083.238573
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | current memory leak: -4.62 B/s (using 50 data points, chi2=0.00)
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | could have reported an average CPU frequency of 3726 MHz (5 samples)
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | ..............................
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | . Timing measurements:
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | . get job = 0 s
[2025-07-25 12:31:07] 2025-07-25 16:30:30,506 | INFO     | . initial setup = 2 s
[2025-07-25 12:31:07] 2025-07-25 16:30:30,507 | INFO     | . payload setup = 5 s
[2025-07-25 12:31:07] 2025-07-25 16:30:30,507 | INFO     | . stage-in = 0 s
[2025-07-25 12:31:07] 2025-07-25 16:30:30,507 | INFO     | . payload execution = 3427 s
[2025-07-25 12:31:07] 2025-07-25 16:30:30,507 | INFO     | . stage-out = 0 s
[2025-07-25 12:31:07] 2025-07-25 16:30:30,507 | INFO     | . log creation = 0 s
[2025-07-25 12:31:07] 2025-07-25 16:30:30,507 | INFO     | ..............................
[2025-07-25 12:31:07] 2025-07-25 16:30:30,561 | INFO     | 
[2025-07-25 12:31:07] 2025-07-25 16:30:30,561 | INFO     | job summary report
[2025-07-25 12:31:07] 2025-07-25 16:30:30,561 | INFO     | --------------------------------------------------
[2025-07-25 12:31:07] 2025-07-25 16:30:30,561 | INFO     | PanDA job id: 6744978357
[2025-07-25 12:31:07] 2025-07-25 16:30:30,561 | INFO     | task id: 45743349
[2025-07-25 12:31:07] 2025-07-25 16:30:30,561 | INFO     | errors: (none)
[2025-07-25 12:31:07] 2025-07-25 16:30:30,561 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 12:31:07] 2025-07-25 16:30:30,561 | INFO     | pilot state: finished 
[2025-07-25 12:31:07] 2025-07-25 16:30:30,561 | INFO     | transexitcode: 0
[2025-07-25 12:31:07] 2025-07-25 16:30:30,561 | INFO     | exeerrorcode: 0
[2025-07-25 12:31:07] 2025-07-25 16:30:30,561 | INFO     | exeerrordiag: 
[2025-07-25 12:31:07] 2025-07-25 16:30:30,562 | INFO     | exitcode: 0
[2025-07-25 12:31:07] 2025-07-25 16:30:30,562 | INFO     | exitmsg: OK
[2025-07-25 12:31:07] 2025-07-25 16:30:30,562 | INFO     | cpuconsumptiontime: 25287 s
[2025-07-25 12:31:07] 2025-07-25 16:30:30,562 | INFO     | nevents: 400
[2025-07-25 12:31:07] 2025-07-25 16:30:30,562 | INFO     | neventsw: 0
[2025-07-25 12:31:07] 2025-07-25 16:30:30,562 | INFO     | pid: 3743265
[2025-07-25 12:31:07] 2025-07-25 16:30:30,562 | INFO     | pgrp: 3743265
[2025-07-25 12:31:07] 2025-07-25 16:30:30,562 | INFO     | corecount: 8
[2025-07-25 12:31:07] 2025-07-25 16:30:30,562 | INFO     | event service: False
[2025-07-25 12:31:07] 2025-07-25 16:30:30,562 | INFO     | sizes: {0: 2397473, 4: 2397735, 11: 2397763, 3436: 2432471, 3439: 2432471, 3443: 2432697}
[2025-07-25 12:31:07] 2025-07-25 16:30:30,562 | INFO     | --------------------------------------------------
[2025-07-25 12:31:07] 2025-07-25 16:30:30,562 | INFO     | 
[2025-07-25 12:31:07] 2025-07-25 16:30:30,562 | INFO     | executing command: ls -lF /tmp/boinchome/slots/13
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,580 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,581 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,581 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,581 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 12:31:07] 2025-07-25 16:30:30,581 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,581 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 12:31:07] 2025-07-25 16:30:30,581 | INFO     | job 6744978357 has completed (purged errors)
[2025-07-25 12:31:07] 2025-07-25 16:30:30,581 | INFO     | overall cleanup function is called
[2025-07-25 12:31:07] 2025-07-25 16:30:31,589 | INFO     | --- collectZombieJob: --- 10, [3743265]
[2025-07-25 12:31:07] 2025-07-25 16:30:31,589 | INFO     | zombie collector waiting for pid 3743265
[2025-07-25 12:31:07] 2025-07-25 16:30:31,589 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 12:31:07] 2025-07-25 16:30:31,589 | INFO     | collected zombie processes
[2025-07-25 12:31:07] 2025-07-25 16:30:31,589 | INFO     | will attempt to kill all subprocesses of pid=3743265
[2025-07-25 12:31:07] 2025-07-25 16:30:31,926 | INFO     | process IDs to be killed: [3743265] (in reverse order)
[2025-07-25 12:31:07] 2025-07-25 16:30:32,040 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 12:31:07] 2025-07-25 16:30:32,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 12:31:07] 2025-07-25 16:30:32,056 | INFO     | did not find any defunct processes belonging to 3743265
[2025-07-25 12:31:07] 2025-07-25 16:30:32,067 | INFO     | did not find any defunct processes belonging to 3743265
[2025-07-25 12:31:07] 2025-07-25 16:30:32,068 | INFO     | ready for new job
[2025-07-25 12:31:07] 2025-07-25 16:30:32,068 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 12:31:07] 2025-07-25 16:30:32,069 | INFO     | ***************************************
[2025-07-25 12:31:07] 2025-07-25 16:30:32,069 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 12:31:07] 2025-07-25 16:30:32,069 | INFO     | ***************************************
[2025-07-25 12:31:07] 2025-07-25 16:30:32,069 | INFO     | 
[2025-07-25 12:31:07] 2025-07-25 16:30:32,074 | INFO     | architecture information:
[2025-07-25 12:31:07] 2025-07-25 16:30:32,074 | INFO     | executing command: cat /etc/os-release
[2025-07-25 12:31:07] 2025-07-25 16:30:32,086 | INFO     | cat /etc/os-release:
[2025-07-25 12:31:07] NAME="CentOS Linux"
[2025-07-25 12:31:07] VERSION="7 (Core)"
[2025-07-25 12:31:07] ID="centos"
[2025-07-25 12:31:07] ID_LIKE="rhel fedora"
[2025-07-25 12:31:07] VERSION_ID="7"
[2025-07-25 12:31:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 12:31:07] ANSI_COLOR="0;31"
[2025-07-25 12:31:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 12:31:07] HOME_URL="https://www.centos.org/"
[2025-07-25 12:31:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 12:31:07] 
[2025-07-25 12:31:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 12:31:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 12:31:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 12:31:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 12:31:07] 
[2025-07-25 12:31:07] 2025-07-25 16:30:32,087 | INFO     | ***************************************
[2025-07-25 12:31:07] 2025-07-25 16:30:32,589 | INFO     | executing command: df -mP /tmp/boinchome/slots/13
[2025-07-25 12:31:07] 2025-07-25 16:30:32,606 | INFO     | sufficient remaining disk space (165915131904 B)
[2025-07-25 12:31:07] 2025-07-25 16:30:32,607 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 12:31:07] 2025-07-25 16:30:32,607 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 12:31:07] 2025-07-25 16:30:32,607 | INFO     | update_server=False
[2025-07-25 12:31:07] 2025-07-25 16:30:32,607 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 12:31:07] 2025-07-25 16:30:32,607 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 12:31:07] 2025-07-25 16:30:32,766 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-25 12:31:07] 2025-07-25 16:30:32,767 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-25 12:31:07] 2025-07-25 16:30:32,767 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 12:31:07] 2025-07-25 16:30:32,767 | INFO     | will abort loop
[2025-07-25 12:31:07] 2025-07-25 16:30:32,814 | INFO     | all data control threads have been joined
[2025-07-25 12:31:07] 2025-07-25 16:30:32,880 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 12:31:07] 2025-07-25 16:30:33,612 | INFO     | [job] retrieve thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:33,633 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:33,716 | INFO     | all job control threads have been joined
[2025-07-25 12:31:07] 2025-07-25 16:30:33,717 | INFO     | [data] copytool_in thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:33,772 | INFO     | [job] job monitor thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:33,820 | INFO     | [data] control thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:33,924 | INFO     | all payload control threads have been joined
[2025-07-25 12:31:07] 2025-07-25 16:30:34,110 | INFO     | [job] validate thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:34,243 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:34,291 | INFO     | [payload] validate_post thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:34,477 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:34,603 | INFO     | [payload] failed_post thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:34,613 | INFO     | [data] copytool_out thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:34,717 | INFO     | [job] control thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:34,930 | INFO     | [payload] control thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:35,571 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 12:31:07] 2025-07-25 16:30:36,577 | INFO     | [job] queue monitor thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:36,885 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:43,019 | INFO     | job.realtimelogging is not enabled
[2025-07-25 12:31:07] 2025-07-25 16:30:44,022 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 12:31:07] 2025-07-25 16:30:44,362 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140097190123328)>', '<ExcThread(monitor, started 140096690956032)>']
[2025-07-25 12:31:07] 2025-07-25 16:30:49,388 | INFO     | all workflow threads have been joined
[2025-07-25 12:31:07] 2025-07-25 16:30:49,388 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 12:31:07] 2025-07-25 16:30:49,388 | INFO     | traces error code: 0
[2025-07-25 12:31:07] 2025-07-25 16:30:49,388 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 12:31:07] 2025-07-25 16:31:03,146 | INFO     | PID=3725240 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 12:31:07] 2025-07-25 16:31:03,147 | INFO     | .. there are 14 such processes running
[2025-07-25 12:31:07] 2025-07-25 16:31:03,148 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 12:31:07] 2025-07-25 16:31:03,148 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 12:31:07] 2025-07-25 16:31:03,148 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 12:31:07] 2025-07-25 16:31:03,148 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 12:31:07] 2025-07-25 16:31:03,148 | CRITICAL | thread 'MainThread' is not alive
[2025-07-25 12:31:07] 2025-07-25 16:31:03,148 | INFO     | [monitor] control thread has ended
[2025-07-25 12:31:07] 2025-07-25 16:31:03,232 [wrapper] ==== pilot stdout END ====
[2025-07-25 12:31:07] 2025-07-25 16:31:03,235 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 12:31:07] 2025-07-25 16:31:03,237 [wrapper] pilotpid: 3725240
[2025-07-25 12:31:07] 2025-07-25 16:31:03,240 [wrapper] Pilot exit status: 0
[2025-07-25 12:31:07] 2025-07-25 16:31:03,247 [wrapper] pandaids: 6744978357
[2025-07-25 12:31:07] 2025-07-25 16:31:03,328 [wrapper] cleanup supervisor_pilot 3938692 3725241
[2025-07-25 12:31:07] 2025-07-25 16:31:03,331 [wrapper] Test setup, not cleaning
[2025-07-25 12:31:07] 2025-07-25 16:31:03,333 [wrapper] apfmon messages muted
[2025-07-25 12:31:07] 2025-07-25 16:31:03,335 [wrapper] ==== wrapper stdout END ====
[2025-07-25 12:31:07] 2025-07-25 16:31:03,337 [wrapper] ==== wrapper stderr END ====
[2025-07-25 12:31:07]  *** Error codes and diagnostics ***
[2025-07-25 12:31:07]     "exeErrorCode": 0,
[2025-07-25 12:31:07]     "exeErrorDiag": "",
[2025-07-25 12:31:07]     "pilotErrorCode": 0,
[2025-07-25 12:31:07]     "pilotErrorDiag": "",
[2025-07-25 12:31:07]  *** Listing of results directory ***
[2025-07-25 12:31:07] total 437304
[2025-07-25 12:31:07] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 04:55 pilot3.tar.gz
[2025-07-25 12:31:07] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 05:02 queuedata.json
[2025-07-25 12:31:07] -rwx------. 1 boincer umatlas     36292 Jul 25 05:03 runpilot2-wrapper.sh
[2025-07-25 12:31:07] -rw-r--r--. 1 boincer umatlas       100 Jul 25 11:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 12:31:07] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 11:32 run_atlas
[2025-07-25 12:31:07] -rw-r--r--. 1 boincer umatlas       105 Jul 25 11:32 job.xml
[2025-07-25 12:31:07] -rw-r--r--. 2 boincer umatlas 233539758 Jul 25 11:32 EVNT.45743347._000976.pool.root.1
[2025-07-25 12:31:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 11:32 start_atlas.sh
[2025-07-25 12:31:07] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 11:32 shared
[2025-07-25 12:31:07] -rw-r--r--. 2 boincer umatlas    542891 Jul 25 11:32 input.tar.gz
[2025-07-25 12:31:07] -rw-r--r--. 1 boincer umatlas         0 Jul 25 11:32 boinc_lockfile
[2025-07-25 12:31:07] -rw-r--r--. 1 boincer umatlas      2561 Jul 25 11:32 pandaJob.out
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas    979317 Jul 25 11:32 agis_schedconf.cvmfs.json
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas   1593052 Jul 25 11:32 agis_ddmendpoints.agis.ALL.json
[2025-07-25 12:31:07] drwx------. 4 boincer umatlas      4096 Jul 25 11:32 pilot3
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas 209086103 Jul 25 12:30 HITS.45743349._018839.pool.root.1
[2025-07-25 12:31:07] -rw-r--r--. 1 boincer umatlas       529 Jul 25 12:30 boinc_task_state.xml
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas      1028 Jul 25 12:30 memory_monitor_summary.json
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas    296823 Jul 25 12:30 log.45743349._018839.job.log.tgz.1
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas      7763 Jul 25 12:30 heartbeat.json
[2025-07-25 12:31:07] -rw-r--r--. 1 boincer umatlas      7175 Jul 25 12:31 init_data.xml
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas       893 Jul 25 12:31 pilotlog.txt
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas        95 Jul 25 12:31 pilot_heartbeat.json
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas    350472 Jul 25 12:31 log.45743349._018839.job.log.1
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas       357 Jul 25 12:31 output.list
[2025-07-25 12:31:07] -rw-r--r--. 1 boincer umatlas       620 Jul 25 12:31 runtime_log
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas    665600 Jul 25 12:31 result.tar.gz
[2025-07-25 12:31:07] -rw-r--r--. 1 boincer umatlas      8674 Jul 25 12:31 runtime_log.err
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas       651 Jul 25 12:31 re3LDmVWTz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmb9OLDmD38Fbm.diag
[2025-07-25 12:31:07] -rw-r--r--. 1 boincer umatlas        27 Jul 25 12:31 wrapper_checkpoint.txt
[2025-07-25 12:31:07] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 12:31 boinc_mmap_file
[2025-07-25 12:31:07] -rw-r--r--. 1 boincer umatlas     21962 Jul 25 12:31 stderr.txt
[2025-07-25 12:31:07] HITS file was successfully produced:
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas 209086103 Jul 25 12:30 shared/HITS.pool.root.1
[2025-07-25 12:31:07]  *** Contents of shared directory: ***
[2025-07-25 12:31:07] total 433464
[2025-07-25 12:31:07] -rw-r--r--. 2 boincer umatlas 233539758 Jul 25 11:32 ATLAS.root_0
[2025-07-25 12:31:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 11:32 start_atlas.sh
[2025-07-25 12:31:07] -rw-r--r--. 2 boincer umatlas    542891 Jul 25 11:32 input.tar.gz
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas 209086103 Jul 25 12:30 HITS.pool.root.1
[2025-07-25 12:31:07] -rw-------. 1 boincer umatlas    665600 Jul 25 12:31 result.tar.gz
12:31:09 (3721512): run_atlas exited; CPU time 25366.100177
12:31:09 (3721512): called boinc_finish(0)

</stderr_txt>
]]>

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