Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:07:42 (1962771): wrapper (7.7.26015): starting
11:07:42 (1962771): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 11:07:42] Arguments: --nthreads 8
[2025-07-25 11:07:42] Threads: 8
[2025-07-25 11:07:42] Checking for CVMFS
[2025-07-25 11:07:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 11:07:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 11:07:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 11:07:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 11:07:43] 2.13.1.0 3153527 5651 125772 148744 2 188 21629592 40960001 12372 16776704 0 70051656 99.998 207894 57700 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 11:07:43] CVMFS is ok
[2025-07-25 11:07:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 11:07:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 11:07:43] Further information can be found at the LHC@home message board.
[2025-07-25 11:07:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 11:07:43] Checking for apptainer binary...
[2025-07-25 11:07:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 11:07:43] Running /usr/bin/apptainer --version
[2025-07-25 11:07:43] apptainer version 1.4.1-1.el9
[2025-07-25 11:07:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 11:07:43] c-208-37.aglt2.org
[2025-07-25 11:07:43] apptainer works
[2025-07-25 11:07:43] Set ATHENA_PROC_NUMBER=8
[2025-07-25 11:07:43] Set ATHENA_CORE_NUMBER=8
[2025-07-25 11:07:43] Starting ATLAS job with PandaID=6744978182
[2025-07-25 11:07:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 12:05:42]  *** The last 200 lines of the pilot log: ***
[2025-07-25 12:05:42]  status=None
[2025-07-25 12:05:42]  status_code=0
[2025-07-25 12:05:42]  storage_token=
[2025-07-25 12:05:42]  surl=/tmp/boinchome/slots/15/PanDA_Pilot-6744978182/log.45743349._018685.job.log.tgz.1
[2025-07-25 12:05:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/73/ec/log.45743349._018685.job.log.tgz.1
[2025-07-25 12:05:42]  workdir=None
[2025-07-25 12:05:42] ]
[2025-07-25 12:05:42] 2025-07-25 16:05:00,411 | INFO     | transferring file log.45743349._018685.job.log.tgz.1 from /tmp/boinchome/slots/15/PanDA_Pilot-6744978182/log.45743349._018685.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-25 12:05:42] 2025-07-25 16:05:00,411 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/15/PanDA_Pilot-6744978182/log.45743349._018685.job.log.tgz.1 /tmp/boinchome/slots/15/log.45743349._018685.j
[2025-07-25 12:05:42] 2025-07-25 16:05:00,427 | INFO     | adding to output.list: log.45743349._018685.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/73/ec/log.45743349._018685.job.log.tg
[2025-07-25 12:05:42] 2025-07-25 16:05:00,428 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 12:05:42] 2025-07-25 16:05:00,428 | INFO     | summary of transferred files:
[2025-07-25 12:05:42] 2025-07-25 16:05:00,428 | INFO     |  -- lfn=log.45743349._018685.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 12:05:42] 2025-07-25 16:05:00,428 | INFO     | stage-out finished correctly
[2025-07-25 12:05:42] 2025-07-25 16:05:00,884 | WARNING  | process 1984902 can no longer be monitored (due to stat problems) - aborting
[2025-07-25 12:05:42] 2025-07-25 16:05:00,885 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6744978182/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 12:05:42] 2025-07-25 16:05:01,236 | INFO     | PID=1969076 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-25 12:05:42] 2025-07-25 16:05:01,237 | INFO     | .. there are 15 such processes running
[2025-07-25 12:05:42] 2025-07-25 16:05:01,431 | INFO     | number of running child processes to parent process 1984902: 1
[2025-07-25 12:05:42] 2025-07-25 16:05:01,431 | INFO     | maximum number of monitored processes: 6
[2025-07-25 12:05:42] 2025-07-25 16:05:03,528 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 12:05:42] 2025-07-25 16:05:03,934 | INFO     | monitor loop #247: job 0:6744978182 is in state 'finished'
[2025-07-25 12:05:42] 2025-07-25 16:05:03,934 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 12:05:42] 2025-07-25 16:05:05,499 | INFO     | job 6744978182 has state=finished
[2025-07-25 12:05:42] 2025-07-25 16:05:05,500 | INFO     | preparing for final server update for job 6744978182 in state='finished'
[2025-07-25 12:05:42] 2025-07-25 16:05:05,500 | INFO     | this job has now completed (state=finished)
[2025-07-25 12:05:42] 2025-07-25 16:05:05,500 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 12:05:42] 2025-07-25 16:05:05,500 | INFO     | log transfer has been attempted: DONE
[2025-07-25 12:05:42] 2025-07-25 16:05:05,500 | INFO     | job 6744978182 has finished - writing final server update
[2025-07-25 12:05:42] 2025-07-25 16:05:05,501 | INFO     | total number of processed events: 400 (read)
[2025-07-25 12:05:42] 2025-07-25 16:05:05,501 | INFO     | executing command: lscpu
[2025-07-25 12:05:42] 2025-07-25 16:05:05,557 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 12:05:42] 2025-07-25 16:05:06,437 | INFO     | monitor loop #248: job 0:6744978182 is in state 'finished'
[2025-07-25 12:05:42] 2025-07-25 16:05:06,437 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 12:05:42] 2025-07-25 16:05:08,845 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-25 12:05:42] 2025-07-25 16:05:08,850 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3645.154195312501
[2025-07-25 12:05:42] 2025-07-25 16:05:08,863 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6744978182/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 12:05:42] 2025-07-25 16:05:08,863 | INFO     | extracted standard info from prmon json
[2025-07-25 12:05:42] 2025-07-25 16:05:08,864 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 12:05:42] 2025-07-25 16:05:08,864 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 12:05:42] 2025-07-25 16:05:08,864 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 12:05:42] 2025-07-25 16:05:08,864 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 12:05:42] 2025-07-25 16:05:08,865 | INFO     | fitting pss+swap vs Time
[2025-07-25 12:05:42] 2025-07-25 16:05:08,865 | INFO     | sum of square deviations: 36465800.0
[2025-07-25 12:05:42] 2025-07-25 16:05:08,865 | INFO     | sum of deviations: 211249038.99999997
[2025-07-25 12:05:42] 2025-07-25 16:05:08,865 | INFO     | mean x: 1753457864.0
[2025-07-25 12:05:42] 2025-07-25 16:05:08,865 | INFO     | mean y: 2508614.7959183673
[2025-07-25 12:05:42] 2025-07-25 16:05:08,865 | INFO     | -- intersect: -10155400678.212673
[2025-07-25 12:05:42] 2025-07-25 16:05:08,865 | INFO     | intersect: -10155400678.212673
[2025-07-25 12:05:42] 2025-07-25 16:05:08,865 | INFO     | chi2: 0.00023099228913292473
[2025-07-25 12:05:42] 2025-07-25 16:05:08,865 | INFO     | -- intersect: -10155400678.212673
[2025-07-25 12:05:42] 2025-07-25 16:05:08,865 | INFO     | current memory leak: 5.79 B/s (using 49 data points, chi2=0.00)
[2025-07-25 12:05:42] 2025-07-25 16:05:08,866 | INFO     | could have reported an average CPU frequency of 3711 MHz (5 samples)
[2025-07-25 12:05:42] 2025-07-25 16:05:08,866 | INFO     | ..............................
[2025-07-25 12:05:42] 2025-07-25 16:05:08,866 | INFO     | . Timing measurements:
[2025-07-25 12:05:42] 2025-07-25 16:05:08,866 | INFO     | . get job = 0 s
[2025-07-25 12:05:42] 2025-07-25 16:05:08,866 | INFO     | . initial setup = 2 s
[2025-07-25 12:05:42] 2025-07-25 16:05:08,866 | INFO     | . payload setup = 4 s
[2025-07-25 12:05:42] 2025-07-25 16:05:08,866 | INFO     | . stage-in = 0 s
[2025-07-25 12:05:42] 2025-07-25 16:05:08,866 | INFO     | . payload execution = 3405 s
[2025-07-25 12:05:42] 2025-07-25 16:05:08,866 | INFO     | . stage-out = 0 s
[2025-07-25 12:05:42] 2025-07-25 16:05:08,866 | INFO     | . log creation = 0 s
[2025-07-25 12:05:42] 2025-07-25 16:05:08,866 | INFO     | ..............................
[2025-07-25 12:05:42] 2025-07-25 16:05:08,923 | INFO     | 
[2025-07-25 12:05:42] 2025-07-25 16:05:08,923 | INFO     | job summary report
[2025-07-25 12:05:42] 2025-07-25 16:05:08,923 | INFO     | --------------------------------------------------
[2025-07-25 12:05:42] 2025-07-25 16:05:08,923 | INFO     | PanDA job id: 6744978182
[2025-07-25 12:05:42] 2025-07-25 16:05:08,923 | INFO     | task id: 45743349
[2025-07-25 12:05:42] 2025-07-25 16:05:08,923 | INFO     | errors: (none)
[2025-07-25 12:05:42] 2025-07-25 16:05:08,923 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | pilot state: finished 
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | transexitcode: 0
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | exeerrorcode: 0
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | exeerrordiag: 
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | exitcode: 0
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | exitmsg: OK
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | cpuconsumptiontime: 25311 s
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | nevents: 400
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | neventsw: 0
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | pid: 1984902
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | pgrp: 1984902
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | corecount: 8
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | event service: False
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | sizes: {0: 2397474, 1: 2397474, 4: 2397764, 11: 2397792, 3414: 2423528, 3415: 2432528, 3418: 2432712, 3423: 2432938}
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | --------------------------------------------------
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | 
[2025-07-25 12:05:42] 2025-07-25 16:05:08,924 | INFO     | executing command: ls -lF /tmp/boinchome/slots/15
[2025-07-25 12:05:42] 2025-07-25 16:05:08,943 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,943 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,943 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,943 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,943 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,943 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,943 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,943 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,943 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,944 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,944 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,944 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,944 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,944 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,944 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,944 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,944 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,944 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 12:05:42] 2025-07-25 16:05:08,944 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,944 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 12:05:42] 2025-07-25 16:05:08,944 | INFO     | job 6744978182 has completed (purged errors)
[2025-07-25 12:05:42] 2025-07-25 16:05:08,944 | INFO     | overall cleanup function is called
[2025-07-25 12:05:42] 2025-07-25 16:05:09,952 | INFO     | --- collectZombieJob: --- 10, [1984902]
[2025-07-25 12:05:42] 2025-07-25 16:05:09,952 | INFO     | zombie collector waiting for pid 1984902
[2025-07-25 12:05:42] 2025-07-25 16:05:09,952 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 12:05:42] 2025-07-25 16:05:09,952 | INFO     | collected zombie processes
[2025-07-25 12:05:42] 2025-07-25 16:05:09,952 | INFO     | will attempt to kill all subprocesses of pid=1984902
[2025-07-25 12:05:42] 2025-07-25 16:05:10,271 | INFO     | process IDs to be killed: [1984902] (in reverse order)
[2025-07-25 12:05:42] 2025-07-25 16:05:10,378 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 12:05:42] 2025-07-25 16:05:10,379 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 12:05:42] 2025-07-25 16:05:10,394 | INFO     | did not find any defunct processes belonging to 1984902
[2025-07-25 12:05:42] 2025-07-25 16:05:10,407 | INFO     | did not find any defunct processes belonging to 1984902
[2025-07-25 12:05:42] 2025-07-25 16:05:10,407 | INFO     | ready for new job
[2025-07-25 12:05:42] 2025-07-25 16:05:10,408 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 12:05:42] 2025-07-25 16:05:10,409 | INFO     | ***************************************
[2025-07-25 12:05:42] 2025-07-25 16:05:10,409 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 12:05:42] 2025-07-25 16:05:10,409 | INFO     | ***************************************
[2025-07-25 12:05:42] 2025-07-25 16:05:10,409 | INFO     | 
[2025-07-25 12:05:42] 2025-07-25 16:05:10,413 | INFO     | architecture information:
[2025-07-25 12:05:42] 2025-07-25 16:05:10,413 | INFO     | executing command: cat /etc/os-release
[2025-07-25 12:05:42] 2025-07-25 16:05:10,426 | INFO     | cat /etc/os-release:
[2025-07-25 12:05:42] NAME="CentOS Linux"
[2025-07-25 12:05:42] VERSION="7 (Core)"
[2025-07-25 12:05:42] ID="centos"
[2025-07-25 12:05:42] ID_LIKE="rhel fedora"
[2025-07-25 12:05:42] VERSION_ID="7"
[2025-07-25 12:05:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 12:05:42] ANSI_COLOR="0;31"
[2025-07-25 12:05:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 12:05:42] HOME_URL="https://www.centos.org/"
[2025-07-25 12:05:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 12:05:42] 
[2025-07-25 12:05:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 12:05:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 12:05:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 12:05:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 12:05:42] 
[2025-07-25 12:05:42] 2025-07-25 16:05:10,426 | INFO     | ***************************************
[2025-07-25 12:05:42] 2025-07-25 16:05:10,929 | INFO     | executing command: df -mP /tmp/boinchome/slots/15
[2025-07-25 12:05:42] 2025-07-25 16:05:10,945 | INFO     | sufficient remaining disk space (164964073472 B)
[2025-07-25 12:05:42] 2025-07-25 16:05:10,945 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 12:05:42] 2025-07-25 16:05:10,945 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 12:05:42] 2025-07-25 16:05:10,945 | INFO     | update_server=False
[2025-07-25 12:05:42] 2025-07-25 16:05:10,945 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 12:05:42] 2025-07-25 16:05:11,000 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 12:05:42] 2025-07-25 16:05:11,012 | INFO     | all data control threads have been joined
[2025-07-25 12:05:42] 2025-07-25 16:05:11,313 | INFO     | all payload control threads have been joined
[2025-07-25 12:05:42] 2025-07-25 16:05:11,443 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-25 12:05:42] 2025-07-25 16:05:11,444 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-25 12:05:42] 2025-07-25 16:05:11,444 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 12:05:42] 2025-07-25 16:05:11,444 | INFO     | will abort loop
[2025-07-25 12:05:42] 2025-07-25 16:05:11,816 | INFO     | all job control threads have been joined
[2025-07-25 12:05:42] 2025-07-25 16:05:11,951 | INFO     | [job] retrieve thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:12,017 | INFO     | [data] control thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:12,159 | INFO     | [payload] failed_post thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:12,318 | INFO     | [payload] control thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:12,449 | INFO     | [job] job monitor thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:12,480 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:12,543 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:12,609 | INFO     | [job] validate thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:12,677 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:12,821 | INFO     | [job] control thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:13,005 | INFO     | [data] copytool_out thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:13,067 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:13,180 | INFO     | [data] copytool_in thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:13,337 | INFO     | [payload] validate_post thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:13,933 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 12:05:42] 2025-07-25 16:05:14,091 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 12:05:42] 2025-07-25 16:05:14,937 | INFO     | [job] queue monitor thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:18,097 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 12:05:42] 2025-07-25 16:05:19,642 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139736669771584)>', '<ExcThread(monitor, started 139736316356352)>']
[2025-07-25 12:05:42] 2025-07-25 16:05:24,668 | INFO     | all workflow threads have been joined
[2025-07-25 12:05:42] 2025-07-25 16:05:24,668 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 12:05:42] 2025-07-25 16:05:24,669 | INFO     | traces error code: 0
[2025-07-25 12:05:42] 2025-07-25 16:05:24,669 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 12:05:42] 2025-07-25 16:05:41,742 | INFO     | PID=1969076 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 12:05:42] 2025-07-25 16:05:41,743 | INFO     | .. there are 15 such processes running
[2025-07-25 12:05:42] 2025-07-25 16:05:41,743 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 12:05:42] 2025-07-25 16:05:41,743 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 12:05:42] 2025-07-25 16:05:41,743 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 12:05:42] 2025-07-25 16:05:41,743 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 12:05:42] 2025-07-25 16:05:41,743 | CRITICAL | thread 'MainThread' is not alive
[2025-07-25 12:05:42] 2025-07-25 16:05:41,743 | INFO     | [monitor] control thread has ended
[2025-07-25 12:05:42] 2025-07-25 16:05:41,862 [wrapper] ==== pilot stdout END ====
[2025-07-25 12:05:42] 2025-07-25 16:05:41,864 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 12:05:42] 2025-07-25 16:05:41,867 [wrapper] pilotpid: 1969076
[2025-07-25 12:05:42] 2025-07-25 16:05:41,869 [wrapper] Pilot exit status: 0
[2025-07-25 12:05:42] 2025-07-25 16:05:41,877 [wrapper] pandaids: 6744978182
[2025-07-25 12:05:42] 2025-07-25 16:05:41,956 [wrapper] cleanup supervisor_pilot 2111369 1969077
[2025-07-25 12:05:42] 2025-07-25 16:05:41,959 [wrapper] Test setup, not cleaning
[2025-07-25 12:05:42] 2025-07-25 16:05:41,961 [wrapper] apfmon messages muted
[2025-07-25 12:05:42] 2025-07-25 16:05:41,963 [wrapper] ==== wrapper stdout END ====
[2025-07-25 12:05:42] 2025-07-25 16:05:41,965 [wrapper] ==== wrapper stderr END ====
[2025-07-25 12:05:42]  *** Error codes and diagnostics ***
[2025-07-25 12:05:42]     "exeErrorCode": 0,
[2025-07-25 12:05:42]     "exeErrorDiag": "",
[2025-07-25 12:05:42]     "pilotErrorCode": 0,
[2025-07-25 12:05:42]     "pilotErrorDiag": "",
[2025-07-25 12:05:42]  *** Listing of results directory ***
[2025-07-25 12:05:42] total 433264
[2025-07-25 12:05:42] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 04:34 pilot3.tar.gz
[2025-07-25 12:05:42] -rwx------. 1 boincer umatlas     36292 Jul 25 04:49 runpilot2-wrapper.sh
[2025-07-25 12:05:42] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 04:49 queuedata.json
[2025-07-25 12:05:42] -rw-r--r--. 1 boincer umatlas       100 Jul 25 11:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 12:05:42] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 11:07 run_atlas
[2025-07-25 12:05:42] -rw-r--r--. 1 boincer umatlas       105 Jul 25 11:07 job.xml
[2025-07-25 12:05:42] -rw-r--r--. 2 boincer umatlas 229667746 Jul 25 11:07 EVNT.45743347._000970.pool.root.1
[2025-07-25 12:05:42] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 11:07 start_atlas.sh
[2025-07-25 12:05:42] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 11:07 shared
[2025-07-25 12:05:42] -rw-r--r--. 2 boincer umatlas    542887 Jul 25 11:07 input.tar.gz
[2025-07-25 12:05:42] -rw-r--r--. 1 boincer umatlas         0 Jul 25 11:07 boinc_lockfile
[2025-07-25 12:05:42] -rw-r--r--. 1 boincer umatlas      2562 Jul 25 11:07 pandaJob.out
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas    979325 Jul 25 11:07 agis_schedconf.cvmfs.json
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas   1593052 Jul 25 11:07 agis_ddmendpoints.agis.ALL.json
[2025-07-25 12:05:42] drwx------. 4 boincer umatlas      4096 Jul 25 11:07 pilot3
[2025-07-25 12:05:42] -rw-r--r--. 1 boincer umatlas      7175 Jul 25 12:04 init_data.xml
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas 208830103 Jul 25 12:04 HITS.45743349._018685.pool.root.1
[2025-07-25 12:05:42] -rw-r--r--. 1 boincer umatlas       529 Jul 25 12:04 boinc_task_state.xml
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas        95 Jul 25 12:04 pilot_heartbeat.json
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas      1028 Jul 25 12:04 memory_monitor_summary.json
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas    292222 Jul 25 12:05 log.45743349._018685.job.log.tgz.1
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas      7765 Jul 25 12:05 heartbeat.json
[2025-07-25 12:05:42] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 12:05 boinc_mmap_file
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas       893 Jul 25 12:05 pilotlog.txt
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas    350024 Jul 25 12:05 log.45743349._018685.job.log.1
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas       357 Jul 25 12:05 output.list
[2025-07-25 12:05:42] -rw-r--r--. 1 boincer umatlas       620 Jul 25 12:05 runtime_log
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas    665600 Jul 25 12:05 result.tar.gz
[2025-07-25 12:05:42] -rw-r--r--. 1 boincer umatlas      8674 Jul 25 12:05 runtime_log.err
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas       651 Jul 25 12:05 AumMDmKITz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmo7OLDmA4nTPm.diag
[2025-07-25 12:05:42] -rw-r--r--. 1 boincer umatlas        27 Jul 25 12:05 wrapper_checkpoint.txt
[2025-07-25 12:05:42] -rw-r--r--. 1 boincer umatlas     22130 Jul 25 12:05 stderr.txt
[2025-07-25 12:05:42] HITS file was successfully produced:
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas 208830103 Jul 25 12:04 shared/HITS.pool.root.1
[2025-07-25 12:05:42]  *** Contents of shared directory: ***
[2025-07-25 12:05:42] total 429428
[2025-07-25 12:05:42] -rw-r--r--. 2 boincer umatlas 229667746 Jul 25 11:07 ATLAS.root_0
[2025-07-25 12:05:42] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 11:07 start_atlas.sh
[2025-07-25 12:05:42] -rw-r--r--. 2 boincer umatlas    542887 Jul 25 11:07 input.tar.gz
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas 208830103 Jul 25 12:04 HITS.pool.root.1
[2025-07-25 12:05:42] -rw-------. 1 boincer umatlas    665600 Jul 25 12:05 result.tar.gz
12:05:44 (1962771): run_atlas exited; CPU time 25387.189353
12:05:44 (1962771): called boinc_finish(0)

</stderr_txt>
]]>

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