Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-25 10:02:29 (20188): Detected: vboxwrapper 26206
2025-07-25 10:02:29 (20188): Detected: BOINC client v8.2.4
2025-07-25 10:02:30 (20188): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-07-25 10:02:30 (20188): Successfully copied 'init_data.xml' to the shared directory.
2025-07-25 10:02:31 (20188): Create VM. (boinc_fd6f3d0970948dc5, slot#4)
2025-07-25 10:02:31 (20188): Setting Memory Size for VM. (4800MB)
2025-07-25 10:02:31 (20188): Setting CPU Count for VM. (8)
2025-07-25 10:02:32 (20188): Setting Chipset Options for VM.
2025-07-25 10:02:32 (20188): Setting Graphics Controller Options for VM.
2025-07-25 10:02:32 (20188): Setting Boot Options for VM.
2025-07-25 10:02:32 (20188): Setting Network Configuration for NAT.
2025-07-25 10:02:33 (20188): Enabling VM Network Access.
2025-07-25 10:02:33 (20188): Disabling USB Support for VM.
2025-07-25 10:02:33 (20188): Disabling COM Port Support for VM.
2025-07-25 10:02:33 (20188): Disabling LPT Port Support for VM.
2025-07-25 10:02:34 (20188): Disabling Audio Support for VM.
2025-07-25 10:02:34 (20188): Disabling Clipboard Support for VM.
2025-07-25 10:02:34 (20188): Disabling Drag and Drop Support for VM.
2025-07-25 10:02:34 (20188): Adding storage controller(s) to VM.
2025-07-25 10:02:35 (20188): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-25 10:02:38 (20188): Adding VirtualBox Guest Additions to VM.
2025-07-25 10:02:38 (20188): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-25 10:02:38 (20188): forwarding host port 64858 to guest port 80
2025-07-25 10:02:38 (20188): Enabling remote desktop for VM.
2025-07-25 10:02:39 (20188): Required extension pack not installed, remote desktop not enabled.
2025-07-25 10:02:39 (20188): Enabling shared directory for VM.
2025-07-25 10:02:39 (20188): Starting VM using VBoxManage interface. (boinc_fd6f3d0970948dc5, slot#4)
2025-07-25 10:02:44 (20188): Successfully started VM. (PID = '28308')
2025-07-25 10:02:44 (20188): Reporting VM Process ID to BOINC.
2025-07-25 10:02:44 (20188): Guest Log: BIOS: VirtualBox 7.0.6
2025-07-25 10:02:44 (20188): Guest Log: CPUID EDX: 0x178bfbff
2025-07-25 10:02:44 (20188): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-25 10:02:44 (20188): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-25 10:02:44 (20188): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-25 10:02:44 (20188): Detected: Web Application Enabled (http://localhost:64858)
2025-07-25 10:02:44 (20188): Preference change detected
2025-07-25 10:02:44 (20188): Setting CPU throttle for VM. (80%)
2025-07-25 10:02:45 (20188): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-25 10:02:46 (20188): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-25 10:02:46 (20188): Guest Log: BIOS: Booting from Hard Disk...
2025-07-25 10:02:49 (20188): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-25 10:02:49 (20188): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-25 10:02:49 (20188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-25 10:02:54 (20188): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-25 10:02:54 (20188): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-25 10:02:58 (20188): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-25 10:02:58 (20188): Guest Log: 00:00:00.000136 main     Log opened 2025-07-25T10:02:57.205999000Z
2025-07-25 10:02:58 (20188): Guest Log: 00:00:00.000218 main     OS Product: Linux
2025-07-25 10:02:58 (20188): Guest Log: 00:00:00.000250 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-25 10:02:58 (20188): Guest Log: 00:00:00.000286 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-25 10:02:58 (20188): Guest Log: 00:00:00.000315 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-25 10:02:58 (20188): Guest Log: 00:00:00.000316 main     Process ID: 1363
2025-07-25 10:02:58 (20188): Guest Log: 00:00:00.000317 main     Package type: LINUX_64BITS_GENERIC
2025-07-25 10:02:58 (20188): Guest Log: 00:00:00.000867 main     5.2.32 r132073 started. Verbose level = 0
2025-07-25 10:02:58 (20188): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-25 10:02:58 (20188): Guest Log: [INFO] Mounting shared directory
2025-07-25 10:02:58 (20188): Guest Log: [INFO] Checking for init_data.xml
2025-07-25 10:03:02 (20188): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-25 10:03:02 (20188): Guest Log: [INFO] Detected branch: prod
2025-07-25 10:03:02 (20188): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-25 10:03:02 (20188): Guest Log: Copying input files
2025-07-25 10:03:05 (20188): Guest Log: Copied input files into RunAtlas.
2025-07-25 10:03:05 (20188): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-25 10:03:05 (20188): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-25 10:03:05 (20188): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-25 10:03:05 (20188): Guest Log: Further information can be found at the LHC@home message board.
2025-07-25 10:03:08 (20188): Guest Log: 00:00:10.003561 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 452 186 000ns (GuestNow=1 753 455 788 660 285 000 ns GuestLast=1 753 437 777 208 099 000 ns fSetTimeLastLoop=true )
2025-07-25 10:03:13 (20188): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-25 10:03:14 (20188): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-25 10:03:14 (20188): Guest Log: 2.6.3.0 1645 0 30180 148744 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-25 10:03:15 (20188): Guest Log: copied the webapp to /var/www
2025-07-25 10:03:15 (20188): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-25 10:03:15 (20188): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-25 10:03:15 (20188): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-25 10:03:15 (20188): Guest Log:  *** Starting ATLAS job. (PandaID=6744978264 taskID=45743349) ***
2025-07-25 10:10:31 (20188): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 10:10:51 (20188): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 10:23:22 (20188): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 10:23:42 (20188): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 10:30:23 (20188): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 10:30:43 (20188): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 10:51:34 (20188): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 10:51:54 (20188): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 11:01:44 (20188): VM state change detected. (old = 'running', new = 'paused')
2025-07-25 11:02:04 (20188): VM state change detected. (old = 'paused', new = 'running')
2025-07-25 11:18:47 (20188): Guest Log:  *** Job finished ***
2025-07-25 11:18:47 (20188): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:16:54,978 | INFO     | end of generic workflow (traces error code: 0)
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:16:54,978 | INFO     | traces error code: 0
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:16:54,978 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:07,136 | INFO     | 4372s have passed since pilot start - server update state is 'UPDATING_FINAL'
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,183 | INFO     | PID=5998 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,183 | INFO     | found 0 job(s) in 20 queues
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,183 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,184 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,184 | INFO     | [monitor] control thread has ended
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,239 [wrapper] ==== pilot stdout END ====
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,242 [wrapper] ==== wrapper stdout RESUME ====
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,246 [wrapper] pilotpid: 5998
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,249 [wrapper] Pilot exit status: 0
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,302 [wrapper] pandaids: 6744978264
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,325 [wrapper] cleanup supervisor_pilot 22431 5999
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,335 [wrapper] Test setup, not cleaning
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,338 [wrapper] apfmon messages muted
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,342 [wrapper] ==== wrapper stdout END ====
2025-07-25 11:18:47 (20188): Guest Log: 2025-07-25 16:17:08,346 [wrapper] ==== wrapper stderr END ====
2025-07-25 11:18:47 (20188): Guest Log:  *** Error codes and diagnostics ***
2025-07-25 11:18:47 (20188): Guest Log:     "exeErrorCode": 0,
2025-07-25 11:18:47 (20188): Guest Log:     "exeErrorDiag": "",
2025-07-25 11:18:47 (20188): Guest Log:     "pilotErrorCode": 0,
2025-07-25 11:18:47 (20188): Guest Log:     "pilotErrorDiag": "",
2025-07-25 11:18:47 (20188): Guest Log:  *** Listing of results directory ***
2025-07-25 11:18:47 (20188): Guest Log: total 202916
2025-07-25 11:18:47 (20188): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 25 08:55 pilot3.tar.gz
2025-07-25 11:18:47 (20188): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 25 08:57 queuedata.json
2025-07-25 11:18:47 (20188): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 25 08:57 runpilot2-wrapper.sh
2025-07-25 11:18:47 (20188): Guest Log: -rwxr-xr-x. 1 atlas atlas      8710 Jul 25 15:03 init_data.xml
2025-07-25 11:18:47 (20188): Guest Log: -rwxr-xr-x. 1 atlas atlas    542892 Jul 25 15:03 input.tar.gz
2025-07-25 11:18:47 (20188): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 25 15:03 start_atlas.sh
2025-07-25 11:18:47 (20188): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 25 15:03 EVNT.45743347._000973.pool.root.1 -> /data/./ATLAS.root_0
2025-07-25 11:18:47 (20188): Guest Log: -rw-r--r--. 1 atlas atlas      2562 Jul 25 15:03 pandaJob.out
2025-07-25 11:18:47 (20188): Guest Log: -rw-------. 1 atlas atlas    979325 Jul 25 15:03 agis_schedconf.cvmfs.json
2025-07-25 11:18:47 (20188): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 25 15:03 agis_ddmendpoints.agis.ALL.json
2025-07-25 11:18:47 (20188): Guest Log: drwx------. 4 atlas atlas      4096 Jul 25 15:03 pilot3
2025-07-25 11:18:47 (20188): Guest Log: -rw-------. 1 atlas atlas 202591394 Jul 25 16:16 HITS.45743349._018767.pool.root.1
2025-07-25 11:18:47 (20188): Guest Log: -rw-------. 1 atlas atlas      1031 Jul 25 16:16 memory_monitor_summary.json
2025-07-25 11:18:47 (20188): Guest Log: -rw-------. 1 atlas atlas    305312 Jul 25 16:16 log.45743349._018767.job.log.tgz.1
2025-07-25 11:18:47 (20188): Guest Log: -rw-------. 1 atlas atlas        95 Jul 25 16:16 pilot_heartbeat.json
2025-07-25 11:18:47 (20188): Guest Log: -rw-------. 1 atlas atlas      7821 Jul 25 16:16 heartbeat.json
2025-07-25 11:18:47 (20188): Guest Log: -rw-------. 1 atlas atlas       859 Jul 25 16:17 pilotlog.txt
2025-07-25 11:18:47 (20188): Guest Log: -rw-------. 1 atlas atlas    387339 Jul 25 16:17 log.45743349._018767.job.log.1
2025-07-25 11:18:47 (20188): Guest Log: -rw-------. 1 atlas atlas       357 Jul 25 16:17 output.list
2025-07-25 11:18:47 (20188): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 25 16:17 runtime_log
2025-07-25 11:18:47 (20188): Guest Log: -rw-------. 1 atlas atlas    716800 Jul 25 16:17 result.tar.gz
2025-07-25 11:18:47 (20188): Guest Log: -rw-r--r--. 1 atlas atlas      8629 Jul 25 16:17 runtime_log.err
2025-07-25 11:18:47 (20188): Guest Log: -rw-------. 1 atlas atlas       665 Jul 25 16:17 bPGMDmJQTz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmu8OLDmoF7b2n.diag
2025-07-25 11:18:47 (20188): Guest Log: Looking for outputfile HITS.45743349._018767.pool.root.1
2025-07-25 11:18:47 (20188): Guest Log: HITS file was successfully produced
2025-07-25 11:18:47 (20188): Guest Log: -rw-------. 1 atlas atlas 202591394 Jul 25 16:16 /home/atlas/RunAtlas/HITS.45743349._018767.pool.root.1
2025-07-25 11:18:47 (20188): Guest Log: Successfully finished the ATLAS job!
2025-07-25 11:18:47 (20188): Guest Log: Copying the results back to the shared directory!
2025-07-25 11:18:47 (20188): Guest Log:  *** Contents of shared directory: ***
2025-07-25 11:18:47 (20188): Guest Log: total 423692
2025-07-25 11:18:47 (20188): Guest Log: -rwxrwxrwx. 1 root root 229977631 Jul 25 15:02 ATLAS.root_0
2025-07-25 11:18:47 (20188): Guest Log: -rwxrwxrwx. 1 root root 202591394 Jul 25  2025 HITS.pool.root.1
2025-07-25 11:18:47 (20188): Guest Log: -rwxrwxrwx. 1 root root      8710 Jul 25 15:02 init_data.xml
2025-07-25 11:18:47 (20188): Guest Log: -rwxrwxrwx. 1 root root    542892 Jul 25 15:02 input.tar.gz
2025-07-25 11:18:47 (20188): Guest Log: -rwxrwxrwx. 1 root root    716800 Jul 25  2025 result.tar.gz
2025-07-25 11:18:47 (20188): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 25 15:02 start_atlas.sh
2025-07-25 11:18:47 (20188): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-25 11:18:47 (20188): VM Completion File Detected.
2025-07-25 11:18:47 (20188): Powering off VM.
2025-07-25 11:18:48 (20188): Successfully stopped VM.
2025-07-25 11:18:48 (20188): Deregistering VM. (boinc_fd6f3d0970948dc5, slot#4)
2025-07-25 11:18:48 (20188): Removing network bandwidth throttle group from VM.
2025-07-25 11:18:48 (20188): Removing VM from VirtualBox.
11:18:53 (20188): called boinc_finish(0)

</stderr_txt>
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