Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:42:07 (2485855): wrapper (7.7.26015): starting
10:42:07 (2485855): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 10:42:07] Arguments: --nthreads 8
[2025-07-25 10:42:07] Threads: 8
[2025-07-25 10:42:07] Checking for CVMFS
[2025-07-25 10:42:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 10:42:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 10:42:07] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 10:42:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 10:42:07] 2.13.0.0 1355338 15636 275896 148744 2 196 32164958 32935937 6858 16776704 0 51286733 99.600 57057415 25303 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 10:42:07] CVMFS is ok
[2025-07-25 10:42:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 10:42:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 10:42:07] Further information can be found at the LHC@home message board.
[2025-07-25 10:42:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 10:42:07] Checking for apptainer binary...
[2025-07-25 10:42:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 10:42:07] Running /usr/bin/apptainer --version
[2025-07-25 10:42:07] apptainer version 1.4.1-1.el9
[2025-07-25 10:42:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 10:42:08] c-8-24.aglt2.org
[2025-07-25 10:42:08] apptainer works
[2025-07-25 10:42:08] Set ATHENA_PROC_NUMBER=8
[2025-07-25 10:42:08] Set ATHENA_CORE_NUMBER=8
[2025-07-25 10:42:08] Starting ATLAS job with PandaID=6744952626
[2025-07-25 10:42:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 12:55:15]  *** The last 200 lines of the pilot log: ***
[2025-07-25 12:55:15] 2025-07-25 16:54:42,233 | INFO     | sum of square deviations: 605592750.0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,234 | INFO     | sum of deviations: 15794287872.0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,234 | INFO     | mean x: 1753458347.0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,234 | INFO     | mean y: 2152794.824
[2025-07-25 12:55:15] 2025-07-25 16:54:42,234 | INFO     | -- intersect: -45729282900.33462
[2025-07-25 12:55:15] 2025-07-25 16:54:42,234 | INFO     | intersect: -45729282900.33462
[2025-07-25 12:55:15] 2025-07-25 16:54:42,234 | INFO     | chi2: 1.7940621141696114
[2025-07-25 12:55:15] 2025-07-25 16:54:42,234 | INFO     | current chi2=1.7940621141696114 (change=0.6470651677063719 %)
[2025-07-25 12:55:15] 2025-07-25 16:54:42,235 | INFO     | right removable region: 124
[2025-07-25 12:55:15] 2025-07-25 16:54:42,235 | INFO     | sum of square deviations: 605592750.0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,236 | INFO     | sum of deviations: -4920256523.0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,236 | INFO     | mean x: 1753458652.0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,236 | INFO     | mean y: 2191721.424
[2025-07-25 12:55:15] 2025-07-25 16:54:42,236 | INFO     | -- intersect: 14248508855.032001
[2025-07-25 12:55:15] 2025-07-25 16:54:42,236 | INFO     | intersect: 14248508855.032001
[2025-07-25 12:55:15] 2025-07-25 16:54:42,236 | INFO     | chi2: 0.17779740467515634
[2025-07-25 12:55:15] 2025-07-25 16:54:42,236 | INFO     | current chi2=0.17779740467515634 (change=90.15380023884072 %)
[2025-07-25 12:55:15] 2025-07-25 16:54:42,237 | INFO     | sum of square deviations: 535786790.0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,237 | INFO     | sum of deviations: -6974462083.999999
[2025-07-25 12:55:15] 2025-07-25 16:54:42,238 | INFO     | mean x: 1753458804.5
[2025-07-25 12:55:15] 2025-07-25 16:54:42,238 | INFO     | mean y: 2196057.933333333
[2025-07-25 12:55:15] 2025-07-25 16:54:42,238 | INFO     | -- intersect: 22827379836.43078
[2025-07-25 12:55:15] 2025-07-25 16:54:42,238 | INFO     | intersect: 22827379836.43078
[2025-07-25 12:55:15] 2025-07-25 16:54:42,238 | INFO     | chi2: 0.1125759288322134
[2025-07-25 12:55:15] 2025-07-25 16:54:42,238 | INFO     | current chi2=0.1125759288322134 (change=36.68303030750389 %)
[2025-07-25 12:55:15] 2025-07-25 16:54:42,239 | INFO     | sum of square deviations: 471562330.0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,239 | INFO     | sum of deviations: -5423611443.0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,239 | INFO     | mean x: 1753458957.0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,239 | INFO     | mean y: 2192317.1304347827
[2025-07-25 12:55:15] 2025-07-25 16:54:42,240 | INFO     | -- intersect: 20169367383.92605
[2025-07-25 12:55:15] 2025-07-25 16:54:42,240 | INFO     | intersect: 20169367383.92605
[2025-07-25 12:55:15] 2025-07-25 16:54:42,240 | INFO     | chi2: 0.10694070188075532
[2025-07-25 12:55:15] 2025-07-25 16:54:42,240 | INFO     | current chi2=0.10694070188075532 (change=5.005712153489758 %)
[2025-07-25 12:55:15] 2025-07-25 16:54:42,240 | INFO     | left removable region: 30
[2025-07-25 12:55:15] 2025-07-25 16:54:42,240 | INFO     | sum of square deviations: 257521107.5
[2025-07-25 12:55:15] 2025-07-25 16:54:42,241 | INFO     | sum of deviations: 1197702761.5000002
[2025-07-25 12:55:15] 2025-07-25 16:54:42,241 | INFO     | mean x: 1753459231.5
[2025-07-25 12:55:15] 2025-07-25 16:54:42,241 | INFO     | mean y: 2178005.8829787234
[2025-07-25 12:55:15] 2025-07-25 16:54:42,241 | INFO     | -- intersect: -8152970844.372795
[2025-07-25 12:55:15] 2025-07-25 16:54:42,241 | INFO     | intersect: -8152970844.372795
[2025-07-25 12:55:15] 2025-07-25 16:54:42,242 | INFO     | chi2: 0.057720063999097876
[2025-07-25 12:55:15] 2025-07-25 16:54:42,242 | INFO     | -- intersect: -8152970844.372795
[2025-07-25 12:55:15] 2025-07-25 16:54:42,242 | INFO     | current memory leak: 4.65 B/s (using 94 data points, chi2=0.06)
[2025-07-25 12:55:15] 2025-07-25 16:54:42,242 | INFO     | could have reported an average CPU frequency of 2640 MHz (8 samples)
[2025-07-25 12:55:15] 2025-07-25 16:54:42,243 | INFO     | ..............................
[2025-07-25 12:55:15] 2025-07-25 16:54:42,243 | INFO     | . Timing measurements:
[2025-07-25 12:55:15] 2025-07-25 16:54:42,243 | INFO     | . get job = 0 s
[2025-07-25 12:55:15] 2025-07-25 16:54:42,243 | INFO     | . initial setup = 2 s
[2025-07-25 12:55:15] 2025-07-25 16:54:42,243 | INFO     | . payload setup = 6 s
[2025-07-25 12:55:15] 2025-07-25 16:54:42,243 | INFO     | . stage-in = 0 s
[2025-07-25 12:55:15] 2025-07-25 16:54:42,243 | INFO     | . payload execution = 7913 s
[2025-07-25 12:55:15] 2025-07-25 16:54:42,243 | INFO     | . stage-out = 0 s
[2025-07-25 12:55:15] 2025-07-25 16:54:42,244 | INFO     | . log creation = 0 s
[2025-07-25 12:55:15] 2025-07-25 16:54:42,244 | INFO     | ..............................
[2025-07-25 12:55:15] 2025-07-25 16:54:42,370 | INFO     | 
[2025-07-25 12:55:15] 2025-07-25 16:54:42,371 | INFO     | job summary report
[2025-07-25 12:55:15] 2025-07-25 16:54:42,371 | INFO     | --------------------------------------------------
[2025-07-25 12:55:15] 2025-07-25 16:54:42,371 | INFO     | PanDA job id: 6744952626
[2025-07-25 12:55:15] 2025-07-25 16:54:42,371 | INFO     | task id: 45743349
[2025-07-25 12:55:15] 2025-07-25 16:54:42,371 | INFO     | errors: (none)
[2025-07-25 12:55:15] 2025-07-25 16:54:42,371 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 12:55:15] 2025-07-25 16:54:42,371 | INFO     | pilot state: finished 
[2025-07-25 12:55:15] 2025-07-25 16:54:42,371 | INFO     | transexitcode: 0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,371 | INFO     | exeerrorcode: 0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,372 | INFO     | exeerrordiag: 
[2025-07-25 12:55:15] 2025-07-25 16:54:42,372 | INFO     | exitcode: 0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,372 | INFO     | exitmsg: OK
[2025-07-25 12:55:15] 2025-07-25 16:54:42,372 | INFO     | cpuconsumptiontime: 52828 s
[2025-07-25 12:55:15] 2025-07-25 16:54:42,372 | INFO     | nevents: 400
[2025-07-25 12:55:15] 2025-07-25 16:54:42,372 | INFO     | neventsw: 0
[2025-07-25 12:55:15] 2025-07-25 16:54:42,372 | INFO     | pid: 2497891
[2025-07-25 12:55:15] 2025-07-25 16:54:42,372 | INFO     | pgrp: 2497891
[2025-07-25 12:55:15] 2025-07-25 16:54:42,372 | INFO     | corecount: 8
[2025-07-25 12:55:15] 2025-07-25 16:54:42,372 | INFO     | event service: False
[2025-07-25 12:55:15] 2025-07-25 16:54:42,373 | INFO     | sizes: {0: 2397195, 1: 2397450, 5: 2397712, 12: 2397768, 7922: 2425506, 7924: 2434688, 7928: 2434826}
[2025-07-25 12:55:15] 2025-07-25 16:54:42,373 | INFO     | --------------------------------------------------
[2025-07-25 12:55:15] 2025-07-25 16:54:42,373 | INFO     | 
[2025-07-25 12:55:15] 2025-07-25 16:54:42,373 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-25 12:55:15] 2025-07-25 16:54:42,389 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,389 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,389 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,389 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,390 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,390 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,390 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,390 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,390 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,390 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,390 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,390 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,390 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,391 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,391 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,391 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,391 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,391 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 12:55:15] 2025-07-25 16:54:42,391 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,391 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 12:55:15] 2025-07-25 16:54:42,391 | INFO     | job 6744952626 has completed (purged errors)
[2025-07-25 12:55:15] 2025-07-25 16:54:42,392 | INFO     | overall cleanup function is called
[2025-07-25 12:55:15] 2025-07-25 16:54:43,271 | WARNING  | process 2497891 can no longer be monitored (due to stat problems) - aborting
[2025-07-25 12:55:15] 2025-07-25 16:54:43,399 | INFO     | --- collectZombieJob: --- 10, [2497891]
[2025-07-25 12:55:15] 2025-07-25 16:54:43,400 | INFO     | zombie collector waiting for pid 2497891
[2025-07-25 12:55:15] 2025-07-25 16:54:43,400 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 12:55:15] 2025-07-25 16:54:43,400 | INFO     | collected zombie processes
[2025-07-25 12:55:15] 2025-07-25 16:54:43,400 | INFO     | will attempt to kill all subprocesses of pid=2497891
[2025-07-25 12:55:15] 2025-07-25 16:54:43,614 | INFO     | using path: /tmp/boinchome/slots/1/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 12:55:15] 2025-07-25 16:54:43,615 | INFO     | using path: /tmp/boinchome/slots/1/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 12:55:15] 2025-07-25 16:54:43,617 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/1/PanDA_Pilot-6744952626/payload.stdout) since it has not been created yet
[2025-07-25 12:55:15] 2025-07-25 16:54:43,617 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-25 12:55:15] 2025-07-25 16:54:43,632 | INFO     | sufficient remaining disk space (74898735104 B)
[2025-07-25 12:55:15] 2025-07-25 16:54:43,635 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-07-25 12:55:15] 2025-07-25 16:54:43,638 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6744952626/HITS.45743349._016427.pool.root.1 since it does not exist
[2025-07-25 12:55:15] 2025-07-25 16:54:43,993 | INFO     | process IDs to be killed: [2497891] (in reverse order)
[2025-07-25 12:55:15] 2025-07-25 16:54:44,068 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 12:55:15] 2025-07-25 16:54:44,069 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 12:55:15] 2025-07-25 16:54:44,092 | INFO     | did not find any defunct processes belonging to 2497891
[2025-07-25 12:55:15] 2025-07-25 16:54:44,113 | INFO     | number of running child processes to parent process 2497891: 1
[2025-07-25 12:55:15] 2025-07-25 16:54:44,113 | INFO     | maximum number of monitored processes: 6
[2025-07-25 12:55:15] 2025-07-25 16:54:44,114 | INFO     | aborting job monitoring since job object (job id=6744952626) has expired
[2025-07-25 12:55:15] 2025-07-25 16:54:44,115 | INFO     | did not find any defunct processes belonging to 2497891
[2025-07-25 12:55:15] 2025-07-25 16:54:44,115 | INFO     | ready for new job
[2025-07-25 12:55:15] 2025-07-25 16:54:44,115 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 12:55:15] 2025-07-25 16:54:44,117 | INFO     | ***************************************
[2025-07-25 12:55:15] 2025-07-25 16:54:44,117 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 12:55:15] 2025-07-25 16:54:44,117 | INFO     | ***************************************
[2025-07-25 12:55:15] 2025-07-25 16:54:44,117 | INFO     | 
[2025-07-25 12:55:15] 2025-07-25 16:54:44,131 | INFO     | architecture information:
[2025-07-25 12:55:15] 2025-07-25 16:54:44,131 | INFO     | executing command: cat /etc/os-release
[2025-07-25 12:55:15] 2025-07-25 16:54:44,143 | INFO     | cat /etc/os-release:
[2025-07-25 12:55:15] NAME="CentOS Linux"
[2025-07-25 12:55:15] VERSION="7 (Core)"
[2025-07-25 12:55:15] ID="centos"
[2025-07-25 12:55:15] ID_LIKE="rhel fedora"
[2025-07-25 12:55:15] VERSION_ID="7"
[2025-07-25 12:55:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 12:55:15] ANSI_COLOR="0;31"
[2025-07-25 12:55:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 12:55:15] HOME_URL="https://www.centos.org/"
[2025-07-25 12:55:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 12:55:15] 
[2025-07-25 12:55:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 12:55:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 12:55:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 12:55:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 12:55:15] 
[2025-07-25 12:55:15] 2025-07-25 16:54:44,143 | INFO     | ***************************************
[2025-07-25 12:55:15] 2025-07-25 16:54:44,646 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-25 12:55:15] 2025-07-25 16:54:44,659 | INFO     | sufficient remaining disk space (74899783680 B)
[2025-07-25 12:55:15] 2025-07-25 16:54:44,659 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 12:55:15] 2025-07-25 16:54:44,659 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 12:55:15] 2025-07-25 16:54:44,660 | INFO     | update_server=False
[2025-07-25 12:55:15] 2025-07-25 16:54:44,660 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 12:55:15] 2025-07-25 16:54:44,660 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 12:55:15] 2025-07-25 16:54:44,660 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 12:55:15] 2025-07-25 16:54:44,660 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 12:55:15] 2025-07-25 16:54:44,661 | INFO     | will abort loop
[2025-07-25 12:55:15] 2025-07-25 16:54:44,839 | INFO     | all job control threads have been joined
[2025-07-25 12:55:15] 2025-07-25 16:54:45,630 | INFO     | all payload control threads have been joined
[2025-07-25 12:55:15] 2025-07-25 16:54:45,665 | INFO     | [job] retrieve thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:45,666 | INFO     | [job] job monitor thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:45,713 | INFO     | [payload] validate_post thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:45,737 | INFO     | all data control threads have been joined
[2025-07-25 12:55:15] 2025-07-25 16:54:45,845 | INFO     | [job] control thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:45,863 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:46,102 | INFO     | [data] copytool_in thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:46,124 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:46,158 | INFO     | [payload] failed_post thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:46,537 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:46,635 | INFO     | [payload] control thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:46,666 | INFO     | [data] copytool_out thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:46,741 | INFO     | [data] control thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:46,781 | INFO     | [job] validate thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:47,361 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 12:55:15] 2025-07-25 16:54:48,366 | INFO     | [job] queue monitor thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:48,662 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:55,593 | INFO     | job.realtimelogging is not enabled
[2025-07-25 12:55:15] 2025-07-25 16:54:56,598 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 12:55:15] 2025-07-25 16:54:57,187 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140449076602688)>', '<ExcThread(monitor, started 140448299472640)>']
[2025-07-25 12:55:15] 2025-07-25 16:55:02,211 | INFO     | all workflow threads have been joined
[2025-07-25 12:55:15] 2025-07-25 16:55:02,211 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 12:55:15] 2025-07-25 16:55:02,211 | INFO     | traces error code: 0
[2025-07-25 12:55:15] 2025-07-25 16:55:02,212 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 12:55:15] 2025-07-25 16:55:15,227 | INFO     | PID=2489440 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 12:55:15] 2025-07-25 16:55:15,228 | INFO     | .. there are 9 such processes running
[2025-07-25 12:55:15] 2025-07-25 16:55:15,229 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 12:55:15] 2025-07-25 16:55:15,229 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 12:55:15] 2025-07-25 16:55:15,229 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 12:55:15] 2025-07-25 16:55:15,229 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 12:55:15] 2025-07-25 16:55:15,229 | INFO     | [monitor] control thread has ended
[2025-07-25 12:55:15] 2025-07-25 16:55:15,350 [wrapper] ==== pilot stdout END ====
[2025-07-25 12:55:15] 2025-07-25 16:55:15,352 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 12:55:15] 2025-07-25 16:55:15,355 [wrapper] pilotpid: 2489440
[2025-07-25 12:55:15] 2025-07-25 16:55:15,357 [wrapper] Pilot exit status: 0
[2025-07-25 12:55:15] 2025-07-25 16:55:15,365 [wrapper] pandaids: 6744952626
[2025-07-25 12:55:15] 2025-07-25 16:55:15,416 [wrapper] cleanup supervisor_pilot 2766977 2489441
[2025-07-25 12:55:15] 2025-07-25 16:55:15,420 [wrapper] Test setup, not cleaning
[2025-07-25 12:55:15] 2025-07-25 16:55:15,422 [wrapper] apfmon messages muted
[2025-07-25 12:55:15] 2025-07-25 16:55:15,425 [wrapper] ==== wrapper stdout END ====
[2025-07-25 12:55:15] 2025-07-25 16:55:15,427 [wrapper] ==== wrapper stderr END ====
[2025-07-25 12:55:15]  *** Error codes and diagnostics ***
[2025-07-25 12:55:15]     "exeErrorCode": 0,
[2025-07-25 12:55:15]     "exeErrorDiag": "",
[2025-07-25 12:55:15]     "pilotErrorCode": 0,
[2025-07-25 12:55:15]     "pilotErrorDiag": "",
[2025-07-25 12:55:15]  *** Listing of results directory ***
[2025-07-25 12:55:15] total 344872
[2025-07-25 12:55:15] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 01:16 pilot3.tar.gz
[2025-07-25 12:55:15] -rwx------. 1 boincer umatlas     36292 Jul 25 01:17 runpilot2-wrapper.sh
[2025-07-25 12:55:15] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 01:17 queuedata.json
[2025-07-25 12:55:15] -rw-r--r--. 1 boincer umatlas       100 Jul 25 10:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 12:55:15] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 10:42 run_atlas
[2025-07-25 12:55:15] -rw-r--r--. 1 boincer umatlas       105 Jul 25 10:42 job.xml
[2025-07-25 12:55:15] -rw-r--r--. 2 boincer umatlas 144289247 Jul 25 10:42 EVNT.45743347._000922.pool.root.1
[2025-07-25 12:55:15] -rw-r--r--. 2 boincer umatlas    542885 Jul 25 10:42 input.tar.gz
[2025-07-25 12:55:15] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 10:42 start_atlas.sh
[2025-07-25 12:55:15] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 10:42 shared
[2025-07-25 12:55:15] -rw-r--r--. 1 boincer umatlas         0 Jul 25 10:42 boinc_lockfile
[2025-07-25 12:55:15] -rw-r--r--. 1 boincer umatlas      2561 Jul 25 10:42 pandaJob.out
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas    979325 Jul 25 10:42 agis_schedconf.cvmfs.json
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas   1593052 Jul 25 10:42 agis_ddmendpoints.agis.ALL.json
[2025-07-25 12:55:15] drwx------. 4 boincer umatlas      4096 Jul 25 10:42 pilot3
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas 202793660 Jul 25 12:54 HITS.45743349._016427.pool.root.1
[2025-07-25 12:55:15] -rw-r--r--. 1 boincer umatlas       530 Jul 25 12:54 boinc_task_state.xml
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas      1037 Jul 25 12:54 memory_monitor_summary.json
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas    338274 Jul 25 12:54 log.45743349._016427.job.log.tgz.1
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas      7807 Jul 25 12:54 heartbeat.json
[2025-07-25 12:55:15] -rw-r--r--. 1 boincer umatlas      6660 Jul 25 12:55 init_data.xml
[2025-07-25 12:55:15] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 12:55 boinc_mmap_file
[2025-07-25 12:55:15] -rw-r--r--. 1 boincer umatlas        27 Jul 25 12:55 wrapper_checkpoint.txt
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas       822 Jul 25 12:55 pilotlog.txt
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas        95 Jul 25 12:55 pilot_heartbeat.json
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas    753920 Jul 25 12:55 log.45743349._016427.job.log.1
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas       357 Jul 25 12:55 output.list
[2025-07-25 12:55:15] -rw-r--r--. 1 boincer umatlas       620 Jul 25 12:55 runtime_log
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas   1116160 Jul 25 12:55 result.tar.gz
[2025-07-25 12:55:15] -rw-r--r--. 1 boincer umatlas      8650 Jul 25 12:55 runtime_log.err
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas       651 Jul 25 12:55 34kMDmHzPz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkkOLDmhbyghn.diag
[2025-07-25 12:55:15] -rw-r--r--. 1 boincer umatlas     21374 Jul 25 12:55 stderr.txt
[2025-07-25 12:55:15] HITS file was successfully produced:
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas 202793660 Jul 25 12:54 shared/HITS.pool.root.1
[2025-07-25 12:55:15]  *** Contents of shared directory: ***
[2025-07-25 12:55:15] total 340596
[2025-07-25 12:55:15] -rw-r--r--. 2 boincer umatlas 144289247 Jul 25 10:42 ATLAS.root_0
[2025-07-25 12:55:15] -rw-r--r--. 2 boincer umatlas    542885 Jul 25 10:42 input.tar.gz
[2025-07-25 12:55:15] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 10:42 start_atlas.sh
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas 202793660 Jul 25 12:54 HITS.pool.root.1
[2025-07-25 12:55:15] -rw-------. 1 boincer umatlas   1116160 Jul 25 12:55 result.tar.gz
12:55:16 (2485855): run_atlas exited; CPU time 53018.960026
12:55:16 (2485855): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN