Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:26:53 (1012562): wrapper (7.7.26015): starting
10:26:53 (1012562): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 10:26:53] Arguments: --nthreads 8
[2025-07-25 10:26:53] Threads: 8
[2025-07-25 10:26:53] Checking for CVMFS
[2025-07-25 10:26:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 10:26:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 10:26:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 10:26:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 10:26:54] 2.12.6.0 1904412 15619 363548 148744 0 235 29412420 32503808 27693 16776704 0 91664413 99.515 133044658 18532 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 10:26:54] CVMFS is ok
[2025-07-25 10:26:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 10:26:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 10:26:54] Further information can be found at the LHC@home message board.
[2025-07-25 10:26:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 10:26:54] Checking for apptainer binary...
[2025-07-25 10:26:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 10:26:54] Running /usr/bin/apptainer --version
[2025-07-25 10:26:54] apptainer version 1.4.1-1.el9
[2025-07-25 10:26:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 10:26:54] c7-7-36.aglt2.org
[2025-07-25 10:26:54] apptainer works
[2025-07-25 10:26:54] Set ATHENA_PROC_NUMBER=8
[2025-07-25 10:26:54] Set ATHENA_CORE_NUMBER=8
[2025-07-25 10:26:54] Starting ATLAS job with PandaID=6745016247
[2025-07-25 10:26:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:40:04 (1012562): BOINC client no longer exists - exiting
10:40:04 (1012562): timer handler: client dead, exiting
10:48:17 (1287587): wrapper (7.7.26015): starting
10:48:17 (1287587): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 10:48:17] Arguments: --nthreads 8
[2025-07-25 10:48:17] Threads: 8
[2025-07-25 10:48:17] This job has been restarted, cleaning up previous attempt
[2025-07-25 10:48:17] Checking for CVMFS
[2025-07-25 10:48:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 10:48:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 10:48:17] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 10:48:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 10:48:17] 2.12.6.0 1904412 15640 381044 148744 3 580 30489998 32503808 29279 16776704 0 92038137 99.515 133387037 18532 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 10:48:17] CVMFS is ok
[2025-07-25 10:48:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 10:48:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 10:48:17] Further information can be found at the LHC@home message board.
[2025-07-25 10:48:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 10:48:17] Checking for apptainer binary...
[2025-07-25 10:48:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 10:48:17] Running /usr/bin/apptainer --version
[2025-07-25 10:48:17] apptainer version 1.4.1-1.el9
[2025-07-25 10:48:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 10:48:17] c7-7-36.aglt2.org
[2025-07-25 10:48:17] apptainer works
[2025-07-25 10:48:17] Set ATHENA_PROC_NUMBER=8
[2025-07-25 10:48:17] Set ATHENA_CORE_NUMBER=8
[2025-07-25 10:48:18] Starting ATLAS job with PandaID=6745016247
[2025-07-25 10:48:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 13:01:32]  *** The last 200 lines of the pilot log: ***
[2025-07-25 13:01:32] 2025-07-25 17:00:58,550 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 13:01:32] 2025-07-25 17:00:58,550 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 13:01:32] 2025-07-25 17:00:58,550 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 13:01:32] 2025-07-25 17:00:58,553 | INFO     | fitting pss+swap vs Time
[2025-07-25 13:01:32] 2025-07-25 17:00:58,553 | INFO     | sum of square deviations: 681202160.4692303
[2025-07-25 13:01:32] 2025-07-25 17:00:58,554 | INFO     | sum of deviations: 8997549300.130764
[2025-07-25 13:01:32] 2025-07-25 17:00:58,554 | INFO     | mean x: 1753458877.5153847
[2025-07-25 13:01:32] 2025-07-25 17:00:58,554 | INFO     | mean y: 2149477.684615385
[2025-07-25 13:01:32] 2025-07-25 17:00:58,554 | INFO     | -- intersect: -23158130409.46242
[2025-07-25 13:01:32] 2025-07-25 17:00:58,555 | INFO     | intersect: -23158130409.46242
[2025-07-25 13:01:32] 2025-07-25 17:00:58,555 | INFO     | chi2: 2.0435595539014586
[2025-07-25 13:01:32] 2025-07-25 17:00:58,555 | INFO     | sum of square deviations: 605582747.9680004
[2025-07-25 13:01:32] 2025-07-25 17:00:58,556 | INFO     | sum of deviations: 15473702824.688004
[2025-07-25 13:01:32] 2025-07-25 17:00:58,556 | INFO     | mean x: 1753458725.016
[2025-07-25 13:01:32] 2025-07-25 17:00:58,556 | INFO     | mean y: 2162082.656
[2025-07-25 13:01:32] 2025-07-25 17:00:58,556 | INFO     | -- intersect: -44801788025.39367
[2025-07-25 13:01:32] 2025-07-25 17:00:58,556 | INFO     | intersect: -44801788025.39367
[2025-07-25 13:01:32] 2025-07-25 17:00:58,556 | INFO     | chi2: 1.3768514572678132
[2025-07-25 13:01:32] 2025-07-25 17:00:58,556 | INFO     | current chi2=1.3768514572678132 (change=32.62484302749096 %)
[2025-07-25 13:01:32] 2025-07-25 17:00:58,556 | INFO     | sum of square deviations: 535777397.96666616
[2025-07-25 13:01:32] 2025-07-25 17:00:58,557 | INFO     | sum of deviations: 14590999042.616665
[2025-07-25 13:01:32] 2025-07-25 17:00:58,557 | INFO     | mean x: 1753458572.5166667
[2025-07-25 13:01:32] 2025-07-25 17:00:58,557 | INFO     | mean y: 2160170.441666667
[2025-07-25 13:01:32] 2025-07-25 17:00:58,557 | INFO     | -- intersect: -47750343854.46765
[2025-07-25 13:01:32] 2025-07-25 17:00:58,558 | INFO     | intersect: -47750343854.46765
[2025-07-25 13:01:32] 2025-07-25 17:00:58,558 | INFO     | chi2: 1.3778578642526689
[2025-07-25 13:01:32] 2025-07-25 17:00:58,558 | INFO     | current chi2=1.3778578642526689 (change=-0.0730948120469541 %)
[2025-07-25 13:01:32] 2025-07-25 17:00:58,558 | INFO     | right removable region: 119
[2025-07-25 13:01:32] 2025-07-25 17:00:58,558 | INFO     | sum of square deviations: 605581527.9680004
[2025-07-25 13:01:32] 2025-07-25 17:00:58,559 | INFO     | sum of deviations: -7111335546.440001
[2025-07-25 13:01:32] 2025-07-25 17:00:58,559 | INFO     | mean x: 1753459030.016
[2025-07-25 13:01:32] 2025-07-25 17:00:58,559 | INFO     | mean y: 2181409.72
[2025-07-25 13:01:32] 2025-07-25 17:00:58,559 | INFO     | -- intersect: 20593026660.92767
[2025-07-25 13:01:32] 2025-07-25 17:00:58,559 | INFO     | intersect: 20593026660.92767
[2025-07-25 13:01:32] 2025-07-25 17:00:58,559 | INFO     | chi2: 0.7369250064251921
[2025-07-25 13:01:32] 2025-07-25 17:00:58,559 | INFO     | current chi2=0.7369250064251921 (change=63.93914701344069 %)
[2025-07-25 13:01:32] 2025-07-25 17:00:58,559 | INFO     | sum of square deviations: 535774957.96666616
[2025-07-25 13:01:32] 2025-07-25 17:00:58,560 | INFO     | sum of deviations: -7208837208.199999
[2025-07-25 13:01:32] 2025-07-25 17:00:58,560 | INFO     | mean x: 1753459182.5166667
[2025-07-25 13:01:32] 2025-07-25 17:00:58,560 | INFO     | mean y: 2181589.6
[2025-07-25 13:01:32] 2025-07-25 17:00:58,560 | INFO     | -- intersect: 23594926285.914333
[2025-07-25 13:01:32] 2025-07-25 17:00:58,560 | INFO     | intersect: 23594926285.914333
[2025-07-25 13:01:32] 2025-07-25 17:00:58,560 | INFO     | chi2: 0.7345035225268044
[2025-07-25 13:01:32] 2025-07-25 17:00:58,561 | INFO     | current chi2=0.7345035225268044 (change=0.32859298806187454 %)
[2025-07-25 13:01:32] 2025-07-25 17:00:58,561 | INFO     | left removable region: 20
[2025-07-25 13:01:32] 2025-07-25 17:00:58,561 | INFO     | sum of square deviations: 300831139.95959556
[2025-07-25 13:01:32] 2025-07-25 17:00:58,561 | INFO     | sum of deviations: 1267994455.9090912
[2025-07-25 13:01:32] 2025-07-25 17:00:58,561 | INFO     | mean x: 1753459152.020202
[2025-07-25 13:01:32] 2025-07-25 17:00:58,561 | INFO     | mean y: 2190754.5454545454
[2025-07-25 13:01:32] 2025-07-25 17:00:58,561 | INFO     | -- intersect: -7388588284.231224
[2025-07-25 13:01:32] 2025-07-25 17:00:58,562 | INFO     | intersect: -7388588284.231224
[2025-07-25 13:01:32] 2025-07-25 17:00:58,562 | INFO     | chi2: 0.029100147690081
[2025-07-25 13:01:32] 2025-07-25 17:00:58,562 | INFO     | -- intersect: -7388588284.231224
[2025-07-25 13:01:32] 2025-07-25 17:00:58,562 | INFO     | current memory leak: 4.21 B/s (using 99 data points, chi2=0.03)
[2025-07-25 13:01:32] 2025-07-25 17:00:58,562 | INFO     | could have reported an average CPU frequency of 3217 MHz (8 samples)
[2025-07-25 13:01:32] 2025-07-25 17:00:58,563 | INFO     | ..............................
[2025-07-25 13:01:32] 2025-07-25 17:00:58,563 | INFO     | . Timing measurements:
[2025-07-25 13:01:32] 2025-07-25 17:00:58,563 | INFO     | . get job = 0 s
[2025-07-25 13:01:32] 2025-07-25 17:00:58,563 | INFO     | . initial setup = 1 s
[2025-07-25 13:01:32] 2025-07-25 17:00:58,563 | INFO     | . payload setup = 8 s
[2025-07-25 13:01:32] 2025-07-25 17:00:58,563 | INFO     | . stage-in = 0 s
[2025-07-25 13:01:32] 2025-07-25 17:00:58,563 | INFO     | . payload execution = 7902 s
[2025-07-25 13:01:32] 2025-07-25 17:00:58,563 | INFO     | . stage-out = 2 s
[2025-07-25 13:01:32] 2025-07-25 17:00:58,563 | INFO     | . log creation = 0 s
[2025-07-25 13:01:32] 2025-07-25 17:00:58,563 | INFO     | ..............................
[2025-07-25 13:01:32] 2025-07-25 17:00:58,646 | INFO     | 
[2025-07-25 13:01:32] 2025-07-25 17:00:58,647 | INFO     | job summary report
[2025-07-25 13:01:32] 2025-07-25 17:00:58,647 | INFO     | --------------------------------------------------
[2025-07-25 13:01:32] 2025-07-25 17:00:58,647 | INFO     | PanDA job id: 6745016247
[2025-07-25 13:01:32] 2025-07-25 17:00:58,647 | INFO     | task id: 45743349
[2025-07-25 13:01:32] 2025-07-25 17:00:58,647 | INFO     | errors: (none)
[2025-07-25 13:01:32] 2025-07-25 17:00:58,647 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 13:01:32] 2025-07-25 17:00:58,647 | INFO     | pilot state: finished 
[2025-07-25 13:01:32] 2025-07-25 17:00:58,647 | INFO     | transexitcode: 0
[2025-07-25 13:01:32] 2025-07-25 17:00:58,647 | INFO     | exeerrorcode: 0
[2025-07-25 13:01:32] 2025-07-25 17:00:58,647 | INFO     | exeerrordiag: 
[2025-07-25 13:01:32] 2025-07-25 17:00:58,647 | INFO     | exitcode: 0
[2025-07-25 13:01:32] 2025-07-25 17:00:58,647 | INFO     | exitmsg: OK
[2025-07-25 13:01:32] 2025-07-25 17:00:58,647 | INFO     | cpuconsumptiontime: 36529 s
[2025-07-25 13:01:32] 2025-07-25 17:00:58,648 | INFO     | nevents: 400
[2025-07-25 13:01:32] 2025-07-25 17:00:58,648 | INFO     | neventsw: 0
[2025-07-25 13:01:32] 2025-07-25 17:00:58,648 | INFO     | pid: 1317847
[2025-07-25 13:01:32] 2025-07-25 17:00:58,648 | INFO     | pgrp: 1317847
[2025-07-25 13:01:32] 2025-07-25 17:00:58,648 | INFO     | corecount: 8
[2025-07-25 13:01:32] 2025-07-25 17:00:58,648 | INFO     | event service: False
[2025-07-25 13:01:32] 2025-07-25 17:00:58,648 | INFO     | sizes: {0: 2397471, 6: 2397733, 11: 2397761, 7915: 2425476, 7916: 2425475, 7918: 2434529, 7921: 2434713, 7933: 2434907}
[2025-07-25 13:01:32] 2025-07-25 17:00:58,648 | INFO     | --------------------------------------------------
[2025-07-25 13:01:32] 2025-07-25 17:00:58,648 | INFO     | 
[2025-07-25 13:01:32] 2025-07-25 17:00:58,648 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-25 13:01:32] 2025-07-25 17:00:58,748 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,749 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,749 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,749 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,749 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,749 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,749 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,749 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,749 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,749 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,749 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,749 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,749 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,749 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,750 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,750 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,750 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,750 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 13:01:32] 2025-07-25 17:00:58,750 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,750 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 13:01:32] 2025-07-25 17:00:58,750 | INFO     | job 6745016247 has completed (purged errors)
[2025-07-25 13:01:32] 2025-07-25 17:00:58,750 | INFO     | overall cleanup function is called
[2025-07-25 13:01:32] 2025-07-25 17:00:59,757 | INFO     | --- collectZombieJob: --- 10, [1317847]
[2025-07-25 13:01:32] 2025-07-25 17:00:59,758 | INFO     | zombie collector waiting for pid 1317847
[2025-07-25 13:01:32] 2025-07-25 17:00:59,773 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 13:01:32] 2025-07-25 17:00:59,774 | INFO     | collected zombie processes
[2025-07-25 13:01:32] 2025-07-25 17:00:59,774 | INFO     | will attempt to kill all subprocesses of pid=1317847
[2025-07-25 13:01:32] 2025-07-25 17:01:00,387 | INFO     | process IDs to be killed: [1317847] (in reverse order)
[2025-07-25 13:01:32] 2025-07-25 17:01:00,626 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 13:01:32] 2025-07-25 17:01:00,627 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 13:01:32] 2025-07-25 17:01:00,669 | INFO     | did not find any defunct processes belonging to 1317847
[2025-07-25 13:01:32] 2025-07-25 17:01:00,691 | INFO     | did not find any defunct processes belonging to 1317847
[2025-07-25 13:01:32] 2025-07-25 17:01:00,691 | INFO     | ready for new job
[2025-07-25 13:01:32] 2025-07-25 17:01:00,691 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 13:01:32] 2025-07-25 17:01:00,693 | INFO     | ***************************************
[2025-07-25 13:01:32] 2025-07-25 17:01:00,693 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 13:01:32] 2025-07-25 17:01:00,693 | INFO     | ***************************************
[2025-07-25 13:01:32] 2025-07-25 17:01:00,693 | INFO     | 
[2025-07-25 13:01:32] 2025-07-25 17:01:00,713 | INFO     | architecture information:
[2025-07-25 13:01:32] 2025-07-25 17:01:00,717 | INFO     | executing command: cat /etc/os-release
[2025-07-25 13:01:32] 2025-07-25 17:01:00,745 | INFO     | cat /etc/os-release:
[2025-07-25 13:01:32] NAME="CentOS Linux"
[2025-07-25 13:01:32] VERSION="7 (Core)"
[2025-07-25 13:01:32] ID="centos"
[2025-07-25 13:01:32] ID_LIKE="rhel fedora"
[2025-07-25 13:01:32] VERSION_ID="7"
[2025-07-25 13:01:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 13:01:32] ANSI_COLOR="0;31"
[2025-07-25 13:01:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 13:01:32] HOME_URL="https://www.centos.org/"
[2025-07-25 13:01:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 13:01:32] 
[2025-07-25 13:01:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 13:01:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 13:01:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 13:01:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 13:01:32] 
[2025-07-25 13:01:32] 2025-07-25 17:01:00,745 | INFO     | ***************************************
[2025-07-25 13:01:32] 2025-07-25 17:01:01,257 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-25 13:01:32] 2025-07-25 17:01:01,298 | INFO     | sufficient remaining disk space (96017055744 B)
[2025-07-25 13:01:32] 2025-07-25 17:01:01,298 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 13:01:32] 2025-07-25 17:01:01,298 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 13:01:32] 2025-07-25 17:01:01,298 | INFO     | update_server=False
[2025-07-25 13:01:32] 2025-07-25 17:01:01,298 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 13:01:32] 2025-07-25 17:01:01,299 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 13:01:32] 2025-07-25 17:01:01,299 | INFO     | aborting loop
[2025-07-25 13:01:32] 2025-07-25 17:01:01,993 | INFO     | all job control threads have been joined
[2025-07-25 13:01:32] 2025-07-25 17:01:02,105 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 13:01:32] 2025-07-25 17:01:02,129 | INFO     | all payload control threads have been joined
[2025-07-25 13:01:32] 2025-07-25 17:01:02,149 | INFO     | all data control threads have been joined
[2025-07-25 13:01:32] 2025-07-25 17:01:02,304 | INFO     | [job] retrieve thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:02,305 | INFO     | [job] job monitor thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:02,402 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 13:01:32] 2025-07-25 17:01:02,507 | INFO     | [payload] failed_post thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:02,568 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:02,999 | INFO     | [job] control thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:03,135 | INFO     | [payload] control thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:03,155 | INFO     | [data] control thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:03,199 | INFO     | [job] validate thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:03,536 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:03,605 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:03,660 | INFO     | [payload] validate_post thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:03,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 13:01:32] 2025-07-25 17:01:03,800 | INFO     | [data] copytool_in thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:04,409 | INFO     | [data] copytool_out thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:04,667 | INFO     | [job] queue monitor thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:06,114 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:12,022 | INFO     | job.realtimelogging is not enabled
[2025-07-25 13:01:32] 2025-07-25 17:01:13,028 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 13:01:32] 2025-07-25 17:01:13,418 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139852697769792)>', '<ExcThread(monitor, started 139852339189504)>']
[2025-07-25 13:01:32] 2025-07-25 17:01:18,447 | INFO     | all workflow threads have been joined
[2025-07-25 13:01:32] 2025-07-25 17:01:18,447 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 13:01:32] 2025-07-25 17:01:18,447 | INFO     | traces error code: 0
[2025-07-25 13:01:32] 2025-07-25 17:01:18,448 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 13:01:32] 2025-07-25 17:01:31,785 | INFO     | PID=1298487 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 13:01:32] 2025-07-25 17:01:31,786 | INFO     | .. there are 39 such processes running
[2025-07-25 13:01:32] 2025-07-25 17:01:31,787 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 13:01:32] 2025-07-25 17:01:31,787 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 13:01:32] 2025-07-25 17:01:31,787 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 13:01:32] 2025-07-25 17:01:31,787 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 13:01:32] 2025-07-25 17:01:31,787 | INFO     | [monitor] control thread has ended
[2025-07-25 13:01:32] 2025-07-25 17:01:31,941 [wrapper] ==== pilot stdout END ====
[2025-07-25 13:01:32] 2025-07-25 17:01:31,949 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 13:01:32] 2025-07-25 17:01:31,957 [wrapper] pilotpid: 1298487
[2025-07-25 13:01:32] 2025-07-25 17:01:31,961 [wrapper] Pilot exit status: 0
[2025-07-25 13:01:32] 2025-07-25 17:01:31,995 [wrapper] pandaids: 6745016247 6745016247
[2025-07-25 13:01:32] 2025-07-25 17:01:32,128 [wrapper] cleanup supervisor_pilot 2221193 1298488
[2025-07-25 13:01:32] 2025-07-25 17:01:32,134 [wrapper] Test setup, not cleaning
[2025-07-25 13:01:32] 2025-07-25 17:01:32,138 [wrapper] apfmon messages muted
[2025-07-25 13:01:32] 2025-07-25 17:01:32,145 [wrapper] ==== wrapper stdout END ====
[2025-07-25 13:01:32] 2025-07-25 17:01:32,152 [wrapper] ==== wrapper stderr END ====
[2025-07-25 13:01:32]  *** Error codes and diagnostics ***
[2025-07-25 13:01:32]     "exeErrorCode": 0,
[2025-07-25 13:01:32]     "exeErrorDiag": "",
[2025-07-25 13:01:32]     "pilotErrorCode": 0,
[2025-07-25 13:01:32]     "pilotErrorDiag": "",
[2025-07-25 13:01:32]  *** Listing of results directory ***
[2025-07-25 13:01:32] total 498288
[2025-07-25 13:01:32] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-25 13:01:32] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 07:25 pilot3.tar.gz
[2025-07-25 13:01:32] -rwx------. 1 boincer umatlas     36292 Jul 25 07:38 runpilot2-wrapper.sh
[2025-07-25 13:01:32] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 07:38 queuedata.json
[2025-07-25 13:01:32] -rw-r--r--. 1 boincer umatlas       100 Jul 25 10:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 13:01:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 10:26 run_atlas
[2025-07-25 13:01:32] -rw-r--r--. 1 boincer umatlas       105 Jul 25 10:26 job.xml
[2025-07-25 13:01:32] -rw-r--r--. 3 boincer umatlas 146689058 Jul 25 10:26 EVNT.45743347._001175.pool.root.1
[2025-07-25 13:01:32] -rw-r--r--. 3 boincer umatlas 146689058 Jul 25 10:26 ATLAS.root_0
[2025-07-25 13:01:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 10:26 start_atlas.sh
[2025-07-25 13:01:32] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 10:26 shared
[2025-07-25 13:01:32] -rw-r--r--. 2 boincer umatlas    542890 Jul 25 10:26 input.tar.gz
[2025-07-25 13:01:32] -rw-r--r--. 1 boincer umatlas         0 Jul 25 10:26 boinc_lockfile
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas   1593052 Jul 25 10:27 agis_ddmendpoints.agis.ALL.json
[2025-07-25 13:01:32] -rw-r--r--. 1 boincer umatlas      2561 Jul 25 10:48 pandaJob.out
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas    979325 Jul 25 10:48 agis_schedconf.cvmfs.json
[2025-07-25 13:01:32] -rw-r--r--. 1 boincer umatlas      6934 Jul 25 12:57 init_data.xml
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas 210942999 Jul 25 12:59 HITS.45743349._020501.pool.root.1
[2025-07-25 13:01:32] -rw-r--r--. 1 boincer umatlas       529 Jul 25 12:59 boinc_task_state.xml
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas      1047 Jul 25 13:00 memory_monitor_summary.json
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas    323806 Jul 25 13:00 log.45743349._020501.job.log.tgz.1
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas      7793 Jul 25 13:00 heartbeat.json
[2025-07-25 13:01:32] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 13:01 boinc_mmap_file
[2025-07-25 13:01:32] -rw-r--r--. 1 boincer umatlas        27 Jul 25 13:01 wrapper_checkpoint.txt
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas        96 Jul 25 13:01 pilot_heartbeat.json
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas       823 Jul 25 13:01 pilotlog.txt
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas    702009 Jul 25 13:01 log.45743349._020501.job.log.1
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas       357 Jul 25 13:01 output.list
[2025-07-25 13:01:32] -rw-r--r--. 1 boincer umatlas       620 Jul 25 13:01 runtime_log
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas   1044480 Jul 25 13:01 result.tar.gz
[2025-07-25 13:01:32] -rw-r--r--. 1 boincer umatlas      8740 Jul 25 13:01 runtime_log.err
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas       780 Jul 25 13:01 NwYKDmMwVz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmASPLDmHGTVDn.diag
[2025-07-25 13:01:32] -rw-r--r--. 1 boincer umatlas     23235 Jul 25 13:01 stderr.txt
[2025-07-25 13:01:32] HITS file was successfully produced:
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas 210942999 Jul 25 12:59 shared/HITS.pool.root.1
[2025-07-25 13:01:32]  *** Contents of shared directory: ***
[2025-07-25 13:01:32] total 350824
[2025-07-25 13:01:32] -rw-r--r--. 3 boincer umatlas 146689058 Jul 25 10:26 ATLAS.root_0
[2025-07-25 13:01:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 10:26 start_atlas.sh
[2025-07-25 13:01:32] -rw-r--r--. 2 boincer umatlas    542890 Jul 25 10:26 input.tar.gz
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas 210942999 Jul 25 12:59 HITS.pool.root.1
[2025-07-25 13:01:32] -rw-------. 1 boincer umatlas   1044480 Jul 25 13:01 result.tar.gz
13:01:34 (1287587): run_atlas exited; CPU time 36869.468551
13:01:34 (1287587): called boinc_finish(0)

</stderr_txt>
]]>

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