Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:24:02 (3107366): wrapper (7.7.26015): starting
10:24:02 (3107366): wrapper: running run_atlas (--nthreads 10)
[2025-07-25 10:24:02] Arguments: --nthreads 10
[2025-07-25 10:24:02] Threads: 10
[2025-07-25 10:24:02] Checking for CVMFS
[2025-07-25 10:24:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 10:24:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 10:24:03] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 10:24:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 10:24:03] 2.13.0.0 215257 15963 285380 148744 3 202 32925190 32935936 19509 16776704 0 44723302 99.539 59228776 25142 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-25 10:24:03] CVMFS is ok
[2025-07-25 10:24:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 10:24:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 10:24:04] Further information can be found at the LHC@home message board.
[2025-07-25 10:24:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 10:24:04] Checking for apptainer binary...
[2025-07-25 10:24:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 10:24:04] Running /usr/bin/apptainer --version
[2025-07-25 10:24:04] apptainer version 1.4.1-1.el9
[2025-07-25 10:24:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 10:24:04] c-5-1.aglt2.org
[2025-07-25 10:24:04] apptainer works
[2025-07-25 10:24:04] Set ATHENA_PROC_NUMBER=10
[2025-07-25 10:24:04] Set ATHENA_CORE_NUMBER=10
[2025-07-25 10:24:04] Starting ATLAS job with PandaID=6745016211
[2025-07-25 10:24:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 15:32:13]  *** The last 200 lines of the pilot log: ***
[2025-07-25 15:32:13] 2025-07-25 19:31:40,471 | INFO     | monitor loop #1051: job 0:6745016211 is in state 'finished'
[2025-07-25 15:32:13] 2025-07-25 19:31:40,472 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 15:32:13] 2025-07-25 19:31:40,737 | INFO     | PID=3111557 has CPU usage=15.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-25 15:32:13] 2025-07-25 19:31:40,738 | INFO     | .. there are 28 such processes running
[2025-07-25 15:32:13] 2025-07-25 19:31:41,056 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-25 15:32:13] 2025-07-25 19:31:41,064 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2760.145199999998
[2025-07-25 15:32:13] 2025-07-25 19:31:41,071 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745016211/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 15:32:13] 2025-07-25 19:31:41,072 | INFO     | extracted standard info from prmon json
[2025-07-25 15:32:13] 2025-07-25 19:31:41,072 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 15:32:13] 2025-07-25 19:31:41,072 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 15:32:13] 2025-07-25 19:31:41,073 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 15:32:13] 2025-07-25 19:31:41,073 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 15:32:13] 2025-07-25 19:31:41,079 | INFO     | fitting pss+swap vs Time
[2025-07-25 15:32:13] 2025-07-25 19:31:41,080 | INFO     | sum of square deviations: 8371673117.129955
[2025-07-25 15:32:13] 2025-07-25 19:31:41,083 | INFO     | sum of deviations: -67777284420.87002
[2025-07-25 15:32:13] 2025-07-25 19:31:41,083 | INFO     | mean x: 1753462769.27
[2025-07-25 15:32:13] 2025-07-25 19:31:41,083 | INFO     | mean y: 2250804.27
[2025-07-25 15:32:13] 2025-07-25 19:31:41,083 | INFO     | -- intersect: 14198331225.881416
[2025-07-25 15:32:13] 2025-07-25 19:31:41,084 | INFO     | intersect: 14198331225.881416
[2025-07-25 15:32:13] 2025-07-25 19:31:41,084 | INFO     | chi2: 3.2461478000424577
[2025-07-25 15:32:13] 2025-07-25 19:31:41,085 | INFO     | sum of square deviations: 7960070734.115287
[2025-07-25 15:32:13] 2025-07-25 19:31:41,087 | INFO     | sum of deviations: -40862961708.73898
[2025-07-25 15:32:13] 2025-07-25 19:31:41,087 | INFO     | mean x: 1753462616.7830508
[2025-07-25 15:32:13] 2025-07-25 19:31:41,087 | INFO     | mean y: 2260690.3322033896
[2025-07-25 15:32:13] 2025-07-25 19:31:41,088 | INFO     | -- intersect: 9003647507.188763
[2025-07-25 15:32:13] 2025-07-25 19:31:41,088 | INFO     | intersect: 9003647507.188763
[2025-07-25 15:32:13] 2025-07-25 19:31:41,088 | INFO     | chi2: 2.5320610574418545
[2025-07-25 15:32:13] 2025-07-25 19:31:41,088 | INFO     | current chi2=2.5320610574418545 (change=21.997973801170218 %)
[2025-07-25 15:32:13] 2025-07-25 19:31:41,088 | INFO     | right removable region: 294
[2025-07-25 15:32:13] 2025-07-25 19:31:41,089 | INFO     | sum of square deviations: 7959929824.115283
[2025-07-25 15:32:13] 2025-07-25 19:31:41,092 | INFO     | sum of deviations: -120838212403.55928
[2025-07-25 15:32:13] 2025-07-25 19:31:41,092 | INFO     | mean x: 1753462921.7830508
[2025-07-25 15:32:13] 2025-07-25 19:31:41,092 | INFO     | mean y: 2270367.2881355933
[2025-07-25 15:32:13] 2025-07-25 19:31:41,092 | INFO     | -- intersect: 26621264462.218643
[2025-07-25 15:32:13] 2025-07-25 19:31:41,092 | INFO     | intersect: 26621264462.218643
[2025-07-25 15:32:13] 2025-07-25 19:31:41,092 | INFO     | chi2: 1.397521675444772
[2025-07-25 15:32:13] 2025-07-25 19:31:41,093 | INFO     | current chi2=1.397521675444772 (change=56.94830421995902 %)
[2025-07-25 15:32:13] 2025-07-25 19:31:41,093 | INFO     | sum of square deviations: 7561961339.244818
[2025-07-25 15:32:13] 2025-07-25 19:31:41,096 | INFO     | sum of deviations: -119202423721.35869
[2025-07-25 15:32:13] 2025-07-25 19:31:41,096 | INFO     | mean x: 1753463074.286207
[2025-07-25 15:32:13] 2025-07-25 19:31:41,096 | INFO     | mean y: 2269714.5103448275
[2025-07-25 15:32:13] 2025-07-25 19:31:41,096 | INFO     | -- intersect: 27642856459.654213
[2025-07-25 15:32:13] 2025-07-25 19:31:41,096 | INFO     | intersect: 27642856459.654213
[2025-07-25 15:32:13] 2025-07-25 19:31:41,097 | INFO     | chi2: 1.3628422819153632
[2025-07-25 15:32:13] 2025-07-25 19:31:41,097 | INFO     | current chi2=1.3628422819153632 (change=2.4814923545548413 %)
[2025-07-25 15:32:13] 2025-07-25 19:31:41,097 | INFO     | left removable region: 20
[2025-07-25 15:32:13] 2025-07-25 19:31:41,097 | INFO     | sum of square deviations: 6378061496.631371
[2025-07-25 15:32:13] 2025-07-25 19:31:41,099 | INFO     | sum of deviations: -70788711896.78465
[2025-07-25 15:32:13] 2025-07-25 19:31:41,100 | INFO     | mean x: 1753463196.310219
[2025-07-25 15:32:13] 2025-07-25 19:31:41,100 | INFO     | mean y: 2272054.2445255476
[2025-07-25 15:32:13] 2025-07-25 19:31:41,100 | INFO     | -- intersect: 19463577200.138332
[2025-07-25 15:32:13] 2025-07-25 19:31:41,100 | INFO     | intersect: 19463577200.138332
[2025-07-25 15:32:13] 2025-07-25 19:31:41,100 | INFO     | chi2: 0.6002748256556516
[2025-07-25 15:32:13] 2025-07-25 19:31:41,101 | INFO     | -- intersect: 19463577200.138332
[2025-07-25 15:32:13] 2025-07-25 19:31:41,101 | INFO     | current memory leak: -11.10 B/s (using 274 data points, chi2=0.60)
[2025-07-25 15:32:13] 2025-07-25 19:31:41,101 | INFO     | could have reported an average CPU frequency of 2612 MHz (13 samples)
[2025-07-25 15:32:13] 2025-07-25 19:31:41,102 | INFO     | ..............................
[2025-07-25 15:32:13] 2025-07-25 19:31:41,102 | INFO     | . Timing measurements:
[2025-07-25 15:32:13] 2025-07-25 19:31:41,102 | INFO     | . get job = 0 s
[2025-07-25 15:32:13] 2025-07-25 19:31:41,102 | INFO     | . initial setup = 5 s
[2025-07-25 15:32:13] 2025-07-25 19:31:41,102 | INFO     | . payload setup = 42 s
[2025-07-25 15:32:13] 2025-07-25 19:31:41,102 | INFO     | . stage-in = 0 s
[2025-07-25 15:32:13] 2025-07-25 19:31:41,103 | INFO     | . payload execution = 18270 s
[2025-07-25 15:32:13] 2025-07-25 19:31:41,103 | INFO     | . stage-out = 2 s
[2025-07-25 15:32:13] 2025-07-25 19:31:41,103 | INFO     | . log creation = 0 s
[2025-07-25 15:32:13] 2025-07-25 19:31:41,103 | INFO     | ..............................
[2025-07-25 15:32:13] 2025-07-25 19:31:41,216 | INFO     | 
[2025-07-25 15:32:13] 2025-07-25 19:31:41,217 | INFO     | job summary report
[2025-07-25 15:32:13] 2025-07-25 19:31:41,217 | INFO     | --------------------------------------------------
[2025-07-25 15:32:13] 2025-07-25 19:31:41,217 | INFO     | PanDA job id: 6745016211
[2025-07-25 15:32:13] 2025-07-25 19:31:41,217 | INFO     | task id: 45743349
[2025-07-25 15:32:13] 2025-07-25 19:31:41,217 | INFO     | errors: (none)
[2025-07-25 15:32:13] 2025-07-25 19:31:41,217 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 15:32:13] 2025-07-25 19:31:41,218 | INFO     | pilot state: finished 
[2025-07-25 15:32:13] 2025-07-25 19:31:41,218 | INFO     | transexitcode: 0
[2025-07-25 15:32:13] 2025-07-25 19:31:41,218 | INFO     | exeerrorcode: 0
[2025-07-25 15:32:13] 2025-07-25 19:31:41,218 | INFO     | exeerrordiag: 
[2025-07-25 15:32:13] 2025-07-25 19:31:41,218 | INFO     | exitcode: 0
[2025-07-25 15:32:13] 2025-07-25 19:31:41,218 | INFO     | exitmsg: OK
[2025-07-25 15:32:13] 2025-07-25 19:31:41,218 | INFO     | cpuconsumptiontime: 56396 s
[2025-07-25 15:32:13] 2025-07-25 19:31:41,218 | INFO     | nevents: 400
[2025-07-25 15:32:13] 2025-07-25 19:31:41,218 | INFO     | neventsw: 0
[2025-07-25 15:32:13] 2025-07-25 19:31:41,218 | INFO     | pid: 3119987
[2025-07-25 15:32:13] 2025-07-25 19:31:41,219 | INFO     | pgrp: 3119987
[2025-07-25 15:32:13] 2025-07-25 19:31:41,219 | INFO     | corecount: 10
[2025-07-25 15:32:13] 2025-07-25 19:31:41,219 | INFO     | event service: False
[2025-07-25 15:32:13] 2025-07-25 19:31:41,219 | INFO     | sizes: {0: 2397301, 1: 2397329, 2: 2397500, 3: 2397528, 14: 2397556, 24: 2397584, 32: 2398002, 35: 2398030, 18317: 2430357, 18320: 2439355, 18321: 2439411, 18325: 
[2025-07-25 15:32:13] 2025-07-25 19:31:41,219 | INFO     | --------------------------------------------------
[2025-07-25 15:32:13] 2025-07-25 19:31:41,219 | INFO     | 
[2025-07-25 15:32:13] 2025-07-25 19:31:41,219 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 15:32:13] 2025-07-25 19:31:41,239 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,239 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,239 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,240 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,240 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,240 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,240 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,240 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,240 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,240 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,240 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,240 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,241 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,241 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,241 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,241 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,241 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,241 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 15:32:13] 2025-07-25 19:31:41,241 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,241 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 15:32:13] 2025-07-25 19:31:41,242 | INFO     | job 6745016211 has completed (purged errors)
[2025-07-25 15:32:13] 2025-07-25 19:31:41,242 | INFO     | overall cleanup function is called
[2025-07-25 15:32:13] 2025-07-25 19:31:42,249 | INFO     | --- collectZombieJob: --- 10, [3119987]
[2025-07-25 15:32:13] 2025-07-25 19:31:42,250 | INFO     | zombie collector waiting for pid 3119987
[2025-07-25 15:32:13] 2025-07-25 19:31:42,250 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 15:32:13] 2025-07-25 19:31:42,250 | INFO     | collected zombie processes
[2025-07-25 15:32:13] 2025-07-25 19:31:42,250 | INFO     | will attempt to kill all subprocesses of pid=3119987
[2025-07-25 15:32:13] 2025-07-25 19:31:42,666 | INFO     | process IDs to be killed: [3119987] (in reverse order)
[2025-07-25 15:32:13] 2025-07-25 19:31:42,793 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 15:32:13] 2025-07-25 19:31:42,793 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 15:32:13] 2025-07-25 19:31:42,809 | INFO     | did not find any defunct processes belonging to 3119987
[2025-07-25 15:32:13] 2025-07-25 19:31:42,826 | INFO     | did not find any defunct processes belonging to 3119987
[2025-07-25 15:32:13] 2025-07-25 19:31:42,826 | INFO     | ready for new job
[2025-07-25 15:32:13] 2025-07-25 19:31:42,826 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 15:32:13] 2025-07-25 19:31:42,829 | INFO     | ***************************************
[2025-07-25 15:32:13] 2025-07-25 19:31:42,829 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 15:32:13] 2025-07-25 19:31:42,829 | INFO     | ***************************************
[2025-07-25 15:32:13] 2025-07-25 19:31:42,829 | INFO     | 
[2025-07-25 15:32:13] 2025-07-25 19:31:42,843 | INFO     | architecture information:
[2025-07-25 15:32:13] 2025-07-25 19:31:42,844 | INFO     | executing command: cat /etc/os-release
[2025-07-25 15:32:13] 2025-07-25 19:31:42,860 | INFO     | cat /etc/os-release:
[2025-07-25 15:32:13] NAME="CentOS Linux"
[2025-07-25 15:32:13] VERSION="7 (Core)"
[2025-07-25 15:32:13] ID="centos"
[2025-07-25 15:32:13] ID_LIKE="rhel fedora"
[2025-07-25 15:32:13] VERSION_ID="7"
[2025-07-25 15:32:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 15:32:13] ANSI_COLOR="0;31"
[2025-07-25 15:32:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 15:32:13] HOME_URL="https://www.centos.org/"
[2025-07-25 15:32:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 15:32:13] 
[2025-07-25 15:32:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 15:32:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 15:32:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 15:32:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 15:32:13] 
[2025-07-25 15:32:13] 2025-07-25 19:31:42,860 | INFO     | ***************************************
[2025-07-25 15:32:13] 2025-07-25 19:31:43,363 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 15:32:13] 2025-07-25 19:31:43,381 | INFO     | sufficient remaining disk space (76702285824 B)
[2025-07-25 15:32:13] 2025-07-25 19:31:43,381 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 15:32:13] 2025-07-25 19:31:43,381 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 15:32:13] 2025-07-25 19:31:43,381 | INFO     | update_server=False
[2025-07-25 15:32:13] 2025-07-25 19:31:43,382 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 15:32:13] 2025-07-25 19:31:43,382 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 15:32:13] 2025-07-25 19:31:43,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 15:32:13] 2025-07-25 19:31:43,981 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 15:32:13] 2025-07-25 19:31:43,982 | INFO     | aborting loop
[2025-07-25 15:32:13] 2025-07-25 19:31:44,161 | INFO     | all payload control threads have been joined
[2025-07-25 15:32:13] 2025-07-25 19:31:44,240 | INFO     | all job control threads have been joined
[2025-07-25 15:32:13] 2025-07-25 19:31:44,386 | INFO     | [job] retrieve thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:44,431 | INFO     | [job] validate thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:44,440 | INFO     | all data control threads have been joined
[2025-07-25 15:32:13] 2025-07-25 19:31:44,568 | INFO     | [payload] failed_post thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:44,780 | INFO     | [data] copytool_in thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:44,935 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:44,969 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:44,987 | INFO     | [job] job monitor thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:45,167 | INFO     | [payload] control thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:45,245 | INFO     | [job] control thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:45,273 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:45,442 | INFO     | [data] control thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:45,693 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:45,796 | INFO     | [payload] validate_post thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:45,924 | INFO     | [data] copytool_out thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:46,230 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 15:32:13] 2025-07-25 19:31:47,236 | INFO     | [job] queue monitor thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:47,389 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 15:32:13] 2025-07-25 19:31:48,795 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140484637796160)>', '<ExcThread(monitor, started 140484364179200)>']
[2025-07-25 15:32:13] 2025-07-25 19:31:53,820 | INFO     | all workflow threads have been joined
[2025-07-25 15:32:13] 2025-07-25 19:31:53,821 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 15:32:13] 2025-07-25 19:31:53,821 | INFO     | traces error code: 0
[2025-07-25 15:32:13] 2025-07-25 19:31:53,822 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 15:32:13] 2025-07-25 19:32:13,372 | INFO     | PID=3111557 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 15:32:13] 2025-07-25 19:32:13,373 | INFO     | .. there are 28 such processes running
[2025-07-25 15:32:13] 2025-07-25 19:32:13,373 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 15:32:13] 2025-07-25 19:32:13,373 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 15:32:13] 2025-07-25 19:32:13,373 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 15:32:13] 2025-07-25 19:32:13,374 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 15:32:13] 2025-07-25 19:32:13,374 | INFO     | [monitor] control thread has ended
[2025-07-25 15:32:13] 2025-07-25 19:32:13,526 [wrapper] ==== pilot stdout END ====
[2025-07-25 15:32:13] 2025-07-25 19:32:13,529 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 15:32:13] 2025-07-25 19:32:13,531 [wrapper] pilotpid: 3111557
[2025-07-25 15:32:13] 2025-07-25 19:32:13,533 [wrapper] Pilot exit status: 0
[2025-07-25 15:32:13] 2025-07-25 19:32:13,543 [wrapper] pandaids: 6745016211
[2025-07-25 15:32:13] 2025-07-25 19:32:13,624 [wrapper] cleanup supervisor_pilot  278186 3111558
[2025-07-25 15:32:13] 2025-07-25 19:32:13,627 [wrapper] Test setup, not cleaning
[2025-07-25 15:32:13] 2025-07-25 19:32:13,630 [wrapper] apfmon messages muted
[2025-07-25 15:32:13] 2025-07-25 19:32:13,633 [wrapper] ==== wrapper stdout END ====
[2025-07-25 15:32:13] 2025-07-25 19:32:13,635 [wrapper] ==== wrapper stderr END ====
[2025-07-25 15:32:13]  *** Error codes and diagnostics ***
[2025-07-25 15:32:13]     "exeErrorCode": 0,
[2025-07-25 15:32:13]     "exeErrorDiag": "",
[2025-07-25 15:32:13]     "pilotErrorCode": 0,
[2025-07-25 15:32:13]     "pilotErrorDiag": "",
[2025-07-25 15:32:13]  *** Listing of results directory ***
[2025-07-25 15:32:13] total 353364
[2025-07-25 15:32:13] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 07:25 pilot3.tar.gz
[2025-07-25 15:32:13] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 07:33 queuedata.json
[2025-07-25 15:32:13] -rwx------. 1 boincer umatlas     36292 Jul 25 07:34 runpilot2-wrapper.sh
[2025-07-25 15:32:13] -rw-r--r--. 1 boincer umatlas       100 Jul 25 10:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 15:32:13] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 10:24 run_atlas
[2025-07-25 15:32:13] -rw-r--r--. 1 boincer umatlas       105 Jul 25 10:24 job.xml
[2025-07-25 15:32:13] -rw-r--r--. 2 boincer umatlas 142659589 Jul 25 10:24 EVNT.45743347._001172.pool.root.1
[2025-07-25 15:32:13] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 10:24 start_atlas.sh
[2025-07-25 15:32:13] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 10:24 shared
[2025-07-25 15:32:13] -rw-r--r--. 2 boincer umatlas    542885 Jul 25 10:24 input.tar.gz
[2025-07-25 15:32:13] -rw-r--r--. 1 boincer umatlas         0 Jul 25 10:24 boinc_lockfile
[2025-07-25 15:32:13] -rw-r--r--. 1 boincer umatlas      2561 Jul 25 10:24 pandaJob.out
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas    979325 Jul 25 10:25 agis_schedconf.cvmfs.json
[2025-07-25 15:32:13] drwx------. 4 boincer umatlas      4096 Jul 25 10:25 pilot3
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas 211559623 Jul 25 15:30 HITS.45743349._020465.pool.root.1
[2025-07-25 15:32:13] -rw-r--r--. 1 boincer umatlas       531 Jul 25 15:31 boinc_task_state.xml
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas        95 Jul 25 15:31 pilot_heartbeat.json
[2025-07-25 15:32:13] -rw-r--r--. 1 boincer umatlas      6658 Jul 25 15:31 init_data.xml
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas      1042 Jul 25 15:31 memory_monitor_summary.json
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas   1593052 Jul 25 15:31 agis_ddmendpoints.agis.ALL.json
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas    454321 Jul 25 15:31 log.45743349._020465.job.log.tgz.1
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas      7827 Jul 25 15:31 heartbeat.json
[2025-07-25 15:32:13] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 15:32 boinc_mmap_file
[2025-07-25 15:32:13] -rw-r--r--. 1 boincer umatlas        28 Jul 25 15:32 wrapper_checkpoint.txt
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas       823 Jul 25 15:32 pilotlog.txt
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas   1420886 Jul 25 15:32 log.45743349._020465.job.log.1
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas       357 Jul 25 15:32 output.list
[2025-07-25 15:32:13] -rw-r--r--. 1 boincer umatlas       620 Jul 25 15:32 runtime_log
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas   1894400 Jul 25 15:32 result.tar.gz
[2025-07-25 15:32:13] -rw-r--r--. 1 boincer umatlas      8648 Jul 25 15:32 runtime_log.err
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas       655 Jul 25 15:32 AlTMDmwrVz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZRPLDmTxTE2n.diag
[2025-07-25 15:32:13] -rw-r--r--. 1 boincer umatlas     21351 Jul 25 15:32 stderr.txt
[2025-07-25 15:32:13] HITS file was successfully produced:
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas 211559623 Jul 25 15:30 shared/HITS.pool.root.1
[2025-07-25 15:32:13]  *** Contents of shared directory: ***
[2025-07-25 15:32:13] total 348328
[2025-07-25 15:32:13] -rw-r--r--. 2 boincer umatlas 142659589 Jul 25 10:24 ATLAS.root_0
[2025-07-25 15:32:13] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 10:24 start_atlas.sh
[2025-07-25 15:32:13] -rw-r--r--. 2 boincer umatlas    542885 Jul 25 10:24 input.tar.gz
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas 211559623 Jul 25 15:30 HITS.pool.root.1
[2025-07-25 15:32:13] -rw-------. 1 boincer umatlas   1894400 Jul 25 15:32 result.tar.gz
15:32:15 (3107366): run_atlas exited; CPU time 57087.362341
15:32:15 (3107366): called boinc_finish(0)

</stderr_txt>
]]>

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