Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:23:27 (1013088): wrapper (7.7.26015): starting
10:23:27 (1013088): wrapper: running run_atlas (--nthreads 8)
[2025-07-25 10:23:27] Arguments: --nthreads 8
[2025-07-25 10:23:27] Threads: 8
[2025-07-25 10:23:27] Checking for CVMFS
[2025-07-25 10:23:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 10:23:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 10:23:27] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 10:23:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 10:23:28] 2.13.1.0 645510 11419 253168 148744 3 211 23449682 40960000 22887 16776704 0 30741009 99.710 36789577 36303 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 10:23:28] CVMFS is ok
[2025-07-25 10:23:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 10:23:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 10:23:28] Further information can be found at the LHC@home message board.
[2025-07-25 10:23:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 10:23:28] Checking for apptainer binary...
[2025-07-25 10:23:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 10:23:28] Running /usr/bin/apptainer --version
[2025-07-25 10:23:28] apptainer version 1.4.1-1.el9
[2025-07-25 10:23:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 10:23:28] c-212-5.aglt2.org
[2025-07-25 10:23:28] apptainer works
[2025-07-25 10:23:28] Set ATHENA_PROC_NUMBER=8
[2025-07-25 10:23:28] Set ATHENA_CORE_NUMBER=8
[2025-07-25 10:23:28] Starting ATLAS job with PandaID=6745015445
[2025-07-25 10:23:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 10:34:16]  *** The last 200 lines of the pilot log: ***
[2025-07-25 10:34:16] 2025-07-25 14:33:42,305 | INFO     | could have reported an average CPU frequency of 3009 MHz (4 samples)
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | ..............................
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . Timing measurements:
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . get job = 0 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . initial setup = 2 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . payload setup = 6 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . stage-in = 0 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . payload execution = 445 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . stage-out = 0 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . log creation = 0 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | ..............................
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-6745015445/pilotlog.txt
[2025-07-25 10:34:16] 2025-07-25 14:33:42,327 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-25 10:34:16] - Log from pilotlog.txt -
[2025-07-25 10:34:16] 2025-07-25 14:33:42,303 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745015445/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 10:34:16] 2025-07-25 14:33:42,304 | INFO     | extracted standard info from prmon json
[2025-07-25 10:34:16] 2025-07-25 14:33:42,304 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 10:34:16] 2025-07-25 14:33:42,304 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 10:34:16] 2025-07-25 14:33:42,304 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 10:34:16] 2025-07-25 14:33:42,304 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 10:34:16] 2025-07-25 14:33:42,305 | WARNING  | wrong length of table data, x=[1753453753.0], y=[2865334.0] (must be same and length>=4)
[2025-07-25 10:34:16] 2025-07-25 14:33:42,305 | INFO     | could have reported an average CPU frequency of 3009 MHz (4 samples)
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | ..............................
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . Timing measurements:
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . get job = 0 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . initial setup = 2 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . payload setup = 6 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . stage-in = 0 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . payload execution = 445 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . stage-out = 0 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . log creation = 0 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | ..............................
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-6745015445/pilotlog.txt
[2025-07-25 10:34:16] 2025-07-25 14:33:42,327 | WARNING  | 
[2025-07-25 10:34:16] [begin log extracts]
[2025-07-25 10:34:16] - Log from pilotlog.txt -
[2025-07-25 10:34:16] 2025-07-25 14:33:42,303 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745015445/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 10:34:16] 2025-07-25 14:33:42,304 | INFO     | extracted standard info from prmon json
[2025-07-25 10:34:16] 2025-07-25 14:33:42,304 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 10:34:16] 2025-07-25 14:33:42,304 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 10:34:16] 2025-07-25 14:33:42,304 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 10:34:16] 2025-07-25 14:33:42,304 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 10:34:16] 2025-07-25 14:33:42,305 | WARNING  | wrong length of table data, x=[1753453753.0], y=[2865334.0] (must be same and length>=4)
[2025-07-25 10:34:16] 2025-07-25 14:33:42,305 | INFO     | could have reported an average CPU frequency of 3009 MHz (4 samples)
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | ..............................
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . Timing measurements:
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . get job = 0 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . initial setup = 2 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . payload setup = 6 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . stage-in = 0 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . payload execution = 445 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . stage-out = 0 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | . log creation = 0 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | ..............................
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-25 10:34:16] 2025-07-25 14:33:42,306 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-6745015445/pilotlog.txt
[2025-07-25 10:34:16] [end log extracts]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,327 | WARNING  | pilotErrorCodes = [1305, 1328] (will report primary/first error code)
[2025-07-25 10:34:16] 2025-07-25 14:33:42,328 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-07-25 10:34:16] 2025-07-25 14:33:42,733 | INFO     | 
[2025-07-25 10:34:16] 2025-07-25 14:33:42,734 | INFO     | job summary report
[2025-07-25 10:34:16] 2025-07-25 14:33:42,734 | INFO     | --------------------------------------------------
[2025-07-25 10:34:16] 2025-07-25 14:33:42,734 | INFO     | PanDA job id: 6745015445
[2025-07-25 10:34:16] 2025-07-25 14:33:42,734 | INFO     | task id: 45743349
[2025-07-25 10:34:16] 2025-07-25 14:33:42,734 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-25 14:31:24,179 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-25 10:34:16] 2025-07-25 14:33:42,734 | INFO     | error 2/2: 1328: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "IS
[2025-07-25 10:34:16] 2025-07-25 14:33:42,734 | INFO     | pilot error code: 1328
[2025-07-25 10:34:16] 2025-07-25 14:33:42,734 | INFO     | pilot error diag: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "I
[2025-07-25 10:34:16] 2025-07-25 14:33:42,734 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 10:34:16] 2025-07-25 14:33:42,734 | INFO     | pilot state: failed 
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | transexitcode: 65
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | exeerrorcode: 0
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | exeerrordiag: 
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | exitcode: 65
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | exitmsg: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "ISF_Kernel_FullG4MT_QS                                16     4   FATAL 
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | cpuconsumptiontime: 1219 s
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | nevents: 0
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | neventsw: 0
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | pid: 1023158
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | pgrp: 1023158
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | corecount: 8
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | event service: False
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | sizes: {0: 2397471, 5: 2397733, 11: 2397789, 456: 2428205, 457: 2432500, 460: 2432556, 586: 2432878}
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | --------------------------------------------------
[2025-07-25 10:34:16] 2025-07-25 14:33:42,735 | INFO     | 
[2025-07-25 10:34:16] 2025-07-25 14:33:42,736 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 10:34:16] 2025-07-25 14:33:42,802 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,802 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,802 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,802 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 10:34:16] 2025-07-25 14:33:42,803 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,804 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 10:34:16] 2025-07-25 14:33:42,804 | INFO     | job 6745015445 has completed (purged errors)
[2025-07-25 10:34:16] 2025-07-25 14:33:42,804 | INFO     | overall cleanup function is called
[2025-07-25 10:34:16] 2025-07-25 14:33:43,829 | INFO     | --- collectZombieJob: --- 10, [1023158]
[2025-07-25 10:34:16] 2025-07-25 14:33:43,830 | INFO     | zombie collector waiting for pid 1023158
[2025-07-25 10:34:16] 2025-07-25 14:33:43,834 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 10:34:16] 2025-07-25 14:33:43,834 | INFO     | collected zombie processes
[2025-07-25 10:34:16] 2025-07-25 14:33:43,834 | INFO     | will attempt to kill all subprocesses of pid=1023158
[2025-07-25 10:34:16] 2025-07-25 14:33:44,534 | INFO     | process IDs to be killed: [1023158] (in reverse order)
[2025-07-25 10:34:16] 2025-07-25 14:33:44,870 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 10:34:16] 2025-07-25 14:33:44,871 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 10:34:16] 2025-07-25 14:33:44,912 | INFO     | did not find any defunct processes belonging to 1023158
[2025-07-25 10:34:16] 2025-07-25 14:33:44,927 | INFO     | did not find any defunct processes belonging to 1023158
[2025-07-25 10:34:16] 2025-07-25 14:33:44,927 | INFO     | ready for new job
[2025-07-25 10:34:16] 2025-07-25 14:33:44,927 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 10:34:16] 2025-07-25 14:33:44,929 | INFO     | ***************************************
[2025-07-25 10:34:16] 2025-07-25 14:33:44,930 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 10:34:16] 2025-07-25 14:33:44,930 | INFO     | ***************************************
[2025-07-25 10:34:16] 2025-07-25 14:33:44,930 | INFO     | 
[2025-07-25 10:34:16] 2025-07-25 14:33:44,957 | INFO     | architecture information:
[2025-07-25 10:34:16] 2025-07-25 14:33:44,972 | INFO     | executing command: cat /etc/os-release
[2025-07-25 10:34:16] 2025-07-25 14:33:45,024 | INFO     | cat /etc/os-release:
[2025-07-25 10:34:16] NAME="CentOS Linux"
[2025-07-25 10:34:16] VERSION="7 (Core)"
[2025-07-25 10:34:16] ID="centos"
[2025-07-25 10:34:16] ID_LIKE="rhel fedora"
[2025-07-25 10:34:16] VERSION_ID="7"
[2025-07-25 10:34:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 10:34:16] ANSI_COLOR="0;31"
[2025-07-25 10:34:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 10:34:16] HOME_URL="https://www.centos.org/"
[2025-07-25 10:34:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 10:34:16] 
[2025-07-25 10:34:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 10:34:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 10:34:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 10:34:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 10:34:16] 
[2025-07-25 10:34:16] 2025-07-25 14:33:45,024 | INFO     | ***************************************
[2025-07-25 10:34:16] 2025-07-25 14:33:45,528 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 10:34:16] 2025-07-25 14:33:45,559 | INFO     | sufficient remaining disk space (129380646912 B)
[2025-07-25 10:34:16] 2025-07-25 14:33:45,560 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 10:34:16] 2025-07-25 14:33:45,560 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 10:34:16] 2025-07-25 14:33:45,560 | INFO     | update_server=False
[2025-07-25 10:34:16] 2025-07-25 14:33:45,560 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 10:34:16] 2025-07-25 14:33:45,644 | INFO     | all payload control threads have been joined
[2025-07-25 10:34:16] 2025-07-25 14:33:45,718 | INFO     | all data control threads have been joined
[2025-07-25 10:34:16] 2025-07-25 14:33:45,905 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-25 10:34:16] 2025-07-25 14:33:45,906 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-25 10:34:16] 2025-07-25 14:33:45,906 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 10:34:16] 2025-07-25 14:33:45,906 | INFO     | will abort loop
[2025-07-25 10:34:16] 2025-07-25 14:33:46,566 | INFO     | [job] retrieve thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:46,645 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 10:34:16] 2025-07-25 14:33:46,650 | INFO     | [payload] control thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:46,725 | INFO     | [data] control thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:46,791 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:46,820 | INFO     | [job] validate thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:46,912 | INFO     | [job] job monitor thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:47,017 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:47,228 | INFO     | all job control threads have been joined
[2025-07-25 10:34:16] 2025-07-25 14:33:47,266 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:47,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 10:34:16] 2025-07-25 14:33:47,548 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:47,671 | INFO     | [data] copytool_in thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:47,952 | INFO     | [payload] failed_post thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:48,112 | INFO     | [payload] validate_post thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:48,235 | INFO     | [job] control thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:48,439 | INFO     | [job] queue monitor thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:48,650 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 10:34:16] 2025-07-25 14:33:48,651 | INFO     | [data] copytool_out thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:52,658 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 10:34:16] 2025-07-25 14:33:54,389 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245262763840)>', '<ExcThread(monitor, started 140244624070400)>']
[2025-07-25 10:34:16] 2025-07-25 14:33:59,416 | INFO     | all workflow threads have been joined
[2025-07-25 10:34:16] 2025-07-25 14:33:59,418 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 10:34:16] 2025-07-25 14:33:59,419 | INFO     | traces error code: 0
[2025-07-25 10:34:16] 2025-07-25 14:33:59,419 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 10:34:16] 2025-07-25 14:34:15,417 | INFO     | PID=1016677 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-25 10:34:16] 2025-07-25 14:34:15,419 | INFO     | .. there are 21 such processes running
[2025-07-25 10:34:16] 2025-07-25 14:34:15,420 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 10:34:16] 2025-07-25 14:34:15,420 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 10:34:16] 2025-07-25 14:34:15,420 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 10:34:16] 2025-07-25 14:34:15,420 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 10:34:16] 2025-07-25 14:34:15,421 | INFO     | [monitor] control thread has ended
[2025-07-25 10:34:16] 2025-07-25 14:34:15,798 [wrapper] ==== pilot stdout END ====
[2025-07-25 10:34:16] 2025-07-25 14:34:15,804 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 10:34:16] 2025-07-25 14:34:15,828 [wrapper] pilotpid: 1016677
[2025-07-25 10:34:16] 2025-07-25 14:34:15,831 [wrapper] Pilot exit status: 0
[2025-07-25 10:34:16] 2025-07-25 14:34:15,854 [wrapper] pandaids: 6745015445
[2025-07-25 10:34:16] 2025-07-25 14:34:15,949 [wrapper] cleanup supervisor_pilot 1016683 1016678
[2025-07-25 10:34:16] 2025-07-25 14:34:15,961 [wrapper] Test setup, not cleaning
[2025-07-25 10:34:16] 2025-07-25 14:34:15,988 [wrapper] apfmon messages muted
[2025-07-25 10:34:16] 2025-07-25 14:34:16,018 [wrapper] ==== wrapper stdout END ====
[2025-07-25 10:34:16] 2025-07-25 14:34:16,022 [wrapper] ==== wrapper stderr END ====
[2025-07-25 10:34:16]  *** Error codes and diagnostics ***
[2025-07-25 10:34:16]     "exeErrorCode": 0,
[2025-07-25 10:34:16]     "exeErrorDiag": "",
[2025-07-25 10:34:16]     "pilotErrorCode": 1305,
[2025-07-25 10:34:16]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"ISF_Kernel_FullG4MT_QS                                16     4   FATAL  Stan",
[2025-07-25 10:34:16]  *** Listing of results directory ***
[2025-07-25 10:34:16] total 146504
[2025-07-25 10:34:16] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 07:25 pilot3.tar.gz
[2025-07-25 10:34:16] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 07:26 queuedata.json
[2025-07-25 10:34:16] -rwx------. 1 boincer umatlas     36292 Jul 25 07:27 runpilot2-wrapper.sh
[2025-07-25 10:34:16] -rw-r--r--. 1 boincer umatlas       100 Jul 25 10:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 10:34:16] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 25 10:23 run_atlas
[2025-07-25 10:34:16] -rw-r--r--. 1 boincer umatlas       105 Jul 25 10:23 job.xml
[2025-07-25 10:34:16] -rw-r--r--. 2 boincer umatlas 145481413 Jul 25 10:23 EVNT.45743347._001075.pool.root.1
[2025-07-25 10:34:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 10:23 start_atlas.sh
[2025-07-25 10:34:16] drwxrwx--x. 2 boincer umatlas      4096 Jul 25 10:23 shared
[2025-07-25 10:34:16] -rw-r--r--. 2 boincer umatlas    542887 Jul 25 10:23 input.tar.gz
[2025-07-25 10:34:16] -rw-r--r--. 1 boincer umatlas         0 Jul 25 10:23 boinc_lockfile
[2025-07-25 10:34:16] -rw-r--r--. 1 boincer umatlas      2561 Jul 25 10:23 pandaJob.out
[2025-07-25 10:34:16] -rw-------. 1 boincer umatlas    979325 Jul 25 10:23 agis_schedconf.cvmfs.json
[2025-07-25 10:34:16] -rw-------. 1 boincer umatlas   1593052 Jul 25 10:23 agis_ddmendpoints.agis.ALL.json
[2025-07-25 10:34:16] drwx------. 4 boincer umatlas      4096 Jul 25 10:23 pilot3
[2025-07-25 10:34:16] -rw-r--r--. 1 boincer umatlas      6937 Jul 25 10:27 init_data.xml
[2025-07-25 10:34:16] -rw-r--r--. 1 boincer umatlas       527 Jul 25 10:31 boinc_task_state.xml
[2025-07-25 10:34:16] -rw-------. 1 boincer umatlas      1033 Jul 25 10:31 memory_monitor_summary.json
[2025-07-25 10:34:16] -rw-------. 1 boincer umatlas    218854 Jul 25 10:31 log.45743349._020362.job.log.tgz.1
[2025-07-25 10:34:16] -rw-------. 1 boincer umatlas     11601 Jul 25 10:33 heartbeat.json
[2025-07-25 10:34:16] -rw-r--r--. 1 boincer umatlas        25 Jul 25 10:34 wrapper_checkpoint.txt
[2025-07-25 10:34:16] -rw-r--r--. 1 boincer umatlas      8192 Jul 25 10:34 boinc_mmap_file
[2025-07-25 10:34:16] -rw-------. 1 boincer umatlas        95 Jul 25 10:34 pilot_heartbeat.json
[2025-07-25 10:34:16] -rw-------. 1 boincer umatlas       823 Jul 25 10:34 pilotlog.txt
[2025-07-25 10:34:16] -rw-------. 1 boincer umatlas    111642 Jul 25 10:34 log.45743349._020362.job.log.1
[2025-07-25 10:34:16] -rw-------. 1 boincer umatlas       188 Jul 25 10:34 output.list
[2025-07-25 10:34:16] -rw-r--r--. 1 boincer umatlas       620 Jul 25 10:34 runtime_log
[2025-07-25 10:34:16] -rw-------. 1 boincer umatlas    358400 Jul 25 10:34 result.tar.gz
[2025-07-25 10:34:16] -rw-r--r--. 1 boincer umatlas      8502 Jul 25 10:34 runtime_log.err
[2025-07-25 10:34:16] -rw-------. 1 boincer umatlas       644 Jul 25 10:34 Ps2NDmOlVz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKQPLDmnl2dkn.diag
[2025-07-25 10:34:16] -rw-r--r--. 1 boincer umatlas     16437 Jul 25 10:34 stderr.txt
[2025-07-25 10:34:16] No HITS result produced
[2025-07-25 10:34:16]  *** Contents of shared directory: ***
[2025-07-25 10:34:16] total 142972
[2025-07-25 10:34:16] -rw-r--r--. 2 boincer umatlas 145481413 Jul 25 10:23 ATLAS.root_0
[2025-07-25 10:34:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 25 10:23 start_atlas.sh
[2025-07-25 10:34:16] -rw-r--r--. 2 boincer umatlas    542887 Jul 25 10:23 input.tar.gz
[2025-07-25 10:34:16] -rw-------. 1 boincer umatlas    358400 Jul 25 10:34 result.tar.gz
10:34:18 (1013088): run_atlas exited; CPU time 1220.351898
10:34:18 (1013088): called boinc_finish(0)

</stderr_txt>
]]>

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