Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:18:06 (28279): wrapper (7.7.26015): starting
10:18:06 (28279): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 10:18:06] Arguments: --nthreads 12
[2025-07-25 10:18:06] Threads: 12
[2025-07-25 10:18:06] Checking for CVMFS
[2025-07-25 10:18:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 10:18:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 10:18:08] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 10:18:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 10:18:08] 2.11.2.0 2947 109185 92484 148744 3 9 13827119 20275200 1 130560 0 35472866 99.969 9680180 9578 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 10:18:08] CVMFS is ok
[2025-07-25 10:18:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 10:18:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 10:18:08] Further information can be found at the LHC@home message board.
[2025-07-25 10:18:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 10:18:08] Checking for apptainer binary...
[2025-07-25 10:18:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 10:18:08] Running /usr/bin/apptainer --version
[2025-07-25 10:18:08] apptainer version 1.3.2-1.el7
[2025-07-25 10:18:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 10:18:09] c-205-18.aglt2.org
[2025-07-25 10:18:10] apptainer works
[2025-07-25 10:18:10] Set ATHENA_PROC_NUMBER=12
[2025-07-25 10:18:10] Set ATHENA_CORE_NUMBER=12
[2025-07-25 10:18:10] Starting ATLAS job with PandaID=6744955702
[2025-07-25 10:18:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 11:39:13]  *** The last 200 lines of the pilot log: ***
[2025-07-25 11:39:13]  scope=mc23_13p6TeV
[2025-07-25 11:39:13]  status=None
[2025-07-25 11:39:13]  status_code=0
[2025-07-25 11:39:13]  storage_token=
[2025-07-25 11:39:13]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6744955702/log.45743349._018080.job.log.tgz.1
[2025-07-25 11:39:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/45/log.45743349._018080.job.log.tgz.1
[2025-07-25 11:39:13]  workdir=None
[2025-07-25 11:39:13] ]
[2025-07-25 11:39:13] 2025-07-25 15:38:30,858 | INFO     | transferring file log.45743349._018080.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6744955702/log.45743349._018080.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-25 11:39:13] 2025-07-25 15:38:30,858 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6744955702/log.45743349._018080.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._018080.job
[2025-07-25 11:39:13] 2025-07-25 15:38:30,880 | INFO     | adding to output.list: log.45743349._018080.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/45/log.45743349._018080.job.log.tg
[2025-07-25 11:39:13] 2025-07-25 15:38:30,881 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 11:39:13] 2025-07-25 15:38:30,881 | INFO     | summary of transferred files:
[2025-07-25 11:39:13] 2025-07-25 15:38:30,882 | INFO     |  -- lfn=log.45743349._018080.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 11:39:13] 2025-07-25 15:38:30,882 | INFO     | stage-out finished correctly
[2025-07-25 11:39:13] 2025-07-25 15:38:31,694 | WARNING  | process 6015 can no longer be monitored (due to stat problems) - aborting
[2025-07-25 11:39:13] 2025-07-25 15:38:31,694 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744955702/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 11:39:13] 2025-07-25 15:38:31,780 | INFO     | number of running child processes to parent process 6015: 1
[2025-07-25 11:39:13] 2025-07-25 15:38:31,780 | INFO     | maximum number of monitored processes: 6
[2025-07-25 11:39:13] 2025-07-25 15:38:33,508 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 11:39:13] 2025-07-25 15:38:34,283 | INFO     | monitor loop #359: job 0:6744955702 is in state 'finished'
[2025-07-25 11:39:13] 2025-07-25 15:38:34,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:39:13] 2025-07-25 15:38:35,448 | INFO     | job 6744955702 has state=finished
[2025-07-25 11:39:13] 2025-07-25 15:38:35,448 | INFO     | preparing for final server update for job 6744955702 in state='finished'
[2025-07-25 11:39:13] 2025-07-25 15:38:35,449 | INFO     | this job has now completed (state=finished)
[2025-07-25 11:39:13] 2025-07-25 15:38:35,449 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 11:39:13] 2025-07-25 15:38:35,449 | INFO     | log transfer has been attempted: DONE
[2025-07-25 11:39:13] 2025-07-25 15:38:35,449 | INFO     | job 6744955702 has finished - writing final server update
[2025-07-25 11:39:13] 2025-07-25 15:38:35,449 | INFO     | total number of processed events: 400 (read)
[2025-07-25 11:39:13] 2025-07-25 15:38:35,450 | INFO     | executing command: lscpu
[2025-07-25 11:39:13] 2025-07-25 15:38:35,476 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 11:39:13] 2025-07-25 15:38:36,786 | INFO     | monitor loop #360: job 0:6744955702 is in state 'finished'
[2025-07-25 11:39:13] 2025-07-25 15:38:36,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:39:13] 2025-07-25 15:38:39,200 | INFO     | PID=31875 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-25 11:39:13] 2025-07-25 15:38:39,289 | INFO     | monitor loop #361: job 0:6744955702 is in state 'finished'
[2025-07-25 11:39:13] 2025-07-25 15:38:39,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:39:13] 2025-07-25 15:38:40,843 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-25 11:39:13] 2025-07-25 15:38:40,847 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-07-25 11:39:13] 2025-07-25 15:38:40,849 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744955702/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 11:39:13] 2025-07-25 15:38:40,850 | INFO     | extracted standard info from prmon json
[2025-07-25 11:39:13] 2025-07-25 15:38:40,850 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 11:39:13] 2025-07-25 15:38:40,850 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 11:39:13] 2025-07-25 15:38:40,851 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 11:39:13] 2025-07-25 15:38:40,851 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 11:39:13] 2025-07-25 15:38:40,853 | INFO     | fitting pss+swap vs Time
[2025-07-25 11:39:13] 2025-07-25 15:38:40,853 | INFO     | sum of square deviations: 115715658.0
[2025-07-25 11:39:13] 2025-07-25 15:38:40,853 | INFO     | sum of deviations: -6481461395.500001
[2025-07-25 11:39:13] 2025-07-25 15:38:40,854 | INFO     | mean x: 1753455605.5
[2025-07-25 11:39:13] 2025-07-25 15:38:40,854 | INFO     | mean y: 2884539.7083333335
[2025-07-25 11:39:13] 2025-07-25 15:38:40,854 | INFO     | -- intersect: 98217378690.28671
[2025-07-25 11:39:13] 2025-07-25 15:38:40,854 | INFO     | intersect: 98217378690.28671
[2025-07-25 11:39:13] 2025-07-25 15:38:40,854 | INFO     | chi2: 0.11695317128958861
[2025-07-25 11:39:13] 2025-07-25 15:38:40,854 | INFO     | -- intersect: 98217378690.28671
[2025-07-25 11:39:13] 2025-07-25 15:38:40,855 | INFO     | current memory leak: -56.01 B/s (using 72 data points, chi2=0.12)
[2025-07-25 11:39:13] 2025-07-25 15:38:40,855 | INFO     | could have reported an average CPU frequency of 2032 MHz (6 samples)
[2025-07-25 11:39:13] 2025-07-25 15:38:40,855 | INFO     | ..............................
[2025-07-25 11:39:13] 2025-07-25 15:38:40,855 | INFO     | . Timing measurements:
[2025-07-25 11:39:13] 2025-07-25 15:38:40,855 | INFO     | . get job = 0 s
[2025-07-25 11:39:13] 2025-07-25 15:38:40,855 | INFO     | . initial setup = 2 s
[2025-07-25 11:39:13] 2025-07-25 15:38:40,856 | INFO     | . payload setup = 10 s
[2025-07-25 11:39:13] 2025-07-25 15:38:40,856 | INFO     | . stage-in = 0 s
[2025-07-25 11:39:13] 2025-07-25 15:38:40,856 | INFO     | . payload execution = 4776 s
[2025-07-25 11:39:13] 2025-07-25 15:38:40,856 | INFO     | . stage-out = 0 s
[2025-07-25 11:39:13] 2025-07-25 15:38:40,856 | INFO     | . log creation = 0 s
[2025-07-25 11:39:13] 2025-07-25 15:38:40,856 | INFO     | ..............................
[2025-07-25 11:39:13] 2025-07-25 15:38:40,940 | INFO     | 
[2025-07-25 11:39:13] 2025-07-25 15:38:40,940 | INFO     | job summary report
[2025-07-25 11:39:13] 2025-07-25 15:38:40,940 | INFO     | --------------------------------------------------
[2025-07-25 11:39:13] 2025-07-25 15:38:40,940 | INFO     | PanDA job id: 6744955702
[2025-07-25 11:39:13] 2025-07-25 15:38:40,940 | INFO     | task id: 45743349
[2025-07-25 11:39:13] 2025-07-25 15:38:40,940 | INFO     | errors: (none)
[2025-07-25 11:39:13] 2025-07-25 15:38:40,940 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 11:39:13] 2025-07-25 15:38:40,941 | INFO     | pilot state: finished 
[2025-07-25 11:39:13] 2025-07-25 15:38:40,941 | INFO     | transexitcode: 0
[2025-07-25 11:39:13] 2025-07-25 15:38:40,941 | INFO     | exeerrorcode: 0
[2025-07-25 11:39:13] 2025-07-25 15:38:40,941 | INFO     | exeerrordiag: 
[2025-07-25 11:39:13] 2025-07-25 15:38:40,941 | INFO     | exitcode: 0
[2025-07-25 11:39:13] 2025-07-25 15:38:40,941 | INFO     | exitmsg: OK
[2025-07-25 11:39:13] 2025-07-25 15:38:40,941 | INFO     | cpuconsumptiontime: 51866 s
[2025-07-25 11:39:13] 2025-07-25 15:38:40,941 | INFO     | nevents: 400
[2025-07-25 11:39:13] 2025-07-25 15:38:40,941 | INFO     | neventsw: 0
[2025-07-25 11:39:13] 2025-07-25 15:38:40,941 | INFO     | pid: 6015
[2025-07-25 11:39:13] 2025-07-25 15:38:40,942 | INFO     | pgrp: 6015
[2025-07-25 11:39:13] 2025-07-25 15:38:40,942 | INFO     | corecount: 12
[2025-07-25 11:39:13] 2025-07-25 15:38:40,942 | INFO     | event service: False
[2025-07-25 11:39:13] 2025-07-25 15:38:40,942 | INFO     | sizes: {0: 2397471, 1: 2397499, 5: 2397761, 11: 2397817, 4789: 2424005, 4790: 2424004, 4791: 2433186, 4794: 2433242, 4801: 2433436}
[2025-07-25 11:39:13] 2025-07-25 15:38:40,942 | INFO     | --------------------------------------------------
[2025-07-25 11:39:13] 2025-07-25 15:38:40,942 | INFO     | 
[2025-07-25 11:39:13] 2025-07-25 15:38:40,942 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 11:39:13] 2025-07-25 15:38:40,966 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,967 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,967 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,967 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,967 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,968 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,968 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,968 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,968 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,968 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,968 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,969 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,969 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,969 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,969 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,969 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,969 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 11:39:13] 2025-07-25 15:38:40,969 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,969 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 11:39:13] 2025-07-25 15:38:40,970 | INFO     | job 6744955702 has completed (purged errors)
[2025-07-25 11:39:13] 2025-07-25 15:38:40,970 | INFO     | overall cleanup function is called
[2025-07-25 11:39:13] 2025-07-25 15:38:41,977 | INFO     | --- collectZombieJob: --- 10, [6015]
[2025-07-25 11:39:13] 2025-07-25 15:38:41,977 | INFO     | zombie collector waiting for pid 6015
[2025-07-25 11:39:13] 2025-07-25 15:38:41,977 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 11:39:13] 2025-07-25 15:38:41,977 | INFO     | collected zombie processes
[2025-07-25 11:39:13] 2025-07-25 15:38:41,978 | INFO     | will attempt to kill all subprocesses of pid=6015
[2025-07-25 11:39:13] 2025-07-25 15:38:42,067 | INFO     | process IDs to be killed: [6015] (in reverse order)
[2025-07-25 11:39:13] 2025-07-25 15:38:42,120 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 11:39:13] 2025-07-25 15:38:42,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 11:39:13] 2025-07-25 15:38:42,124 | INFO     | did not find any defunct processes belonging to 6015
[2025-07-25 11:39:13] 2025-07-25 15:38:42,127 | INFO     | did not find any defunct processes belonging to 6015
[2025-07-25 11:39:13] 2025-07-25 15:38:42,127 | INFO     | ready for new job
[2025-07-25 11:39:13] 2025-07-25 15:38:42,128 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 11:39:13] 2025-07-25 15:38:42,129 | INFO     | ***************************************
[2025-07-25 11:39:13] 2025-07-25 15:38:42,129 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 11:39:13] 2025-07-25 15:38:42,129 | INFO     | ***************************************
[2025-07-25 11:39:13] 2025-07-25 15:38:42,129 | INFO     | 
[2025-07-25 11:39:13] 2025-07-25 15:38:42,130 | INFO     | architecture information:
[2025-07-25 11:39:13] 2025-07-25 15:38:42,130 | INFO     | executing command: cat /etc/os-release
[2025-07-25 11:39:13] 2025-07-25 15:38:42,144 | INFO     | cat /etc/os-release:
[2025-07-25 11:39:13] NAME="CentOS Linux"
[2025-07-25 11:39:13] VERSION="7 (Core)"
[2025-07-25 11:39:13] ID="centos"
[2025-07-25 11:39:13] ID_LIKE="rhel fedora"
[2025-07-25 11:39:13] VERSION_ID="7"
[2025-07-25 11:39:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 11:39:13] ANSI_COLOR="0;31"
[2025-07-25 11:39:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 11:39:13] HOME_URL="https://www.centos.org/"
[2025-07-25 11:39:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 11:39:13] 
[2025-07-25 11:39:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 11:39:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 11:39:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 11:39:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 11:39:13] 
[2025-07-25 11:39:13] 2025-07-25 15:38:42,145 | INFO     | ***************************************
[2025-07-25 11:39:13] 2025-07-25 15:38:42,648 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 11:39:13] 2025-07-25 15:38:42,664 | INFO     | sufficient remaining disk space (29524754432 B)
[2025-07-25 11:39:13] 2025-07-25 15:38:42,664 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 11:39:13] 2025-07-25 15:38:42,665 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 11:39:13] 2025-07-25 15:38:42,665 | INFO     | update_server=False
[2025-07-25 11:39:13] 2025-07-25 15:38:42,665 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 11:39:13] 2025-07-25 15:38:42,665 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 11:39:13] 2025-07-25 15:38:42,797 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 11:39:13] 2025-07-25 15:38:42,797 | INFO     | aborting loop
[2025-07-25 11:39:13] 2025-07-25 15:38:43,106 | INFO     | all data control threads have been joined
[2025-07-25 11:39:13] 2025-07-25 15:38:43,164 | INFO     | all payload control threads have been joined
[2025-07-25 11:39:13] 2025-07-25 15:38:43,670 | INFO     | [job] queue monitor thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:43,671 | INFO     | [job] retrieve thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:43,802 | INFO     | [job] job monitor thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:43,886 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:43,937 | INFO     | [data] copytool_in thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:43,980 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 11:39:13] 2025-07-25 15:38:44,020 | INFO     | all job control threads have been joined
[2025-07-25 11:39:13] 2025-07-25 15:38:44,098 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 11:39:13] 2025-07-25 15:38:44,110 | INFO     | [data] control thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:44,169 | INFO     | [payload] control thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:44,462 | INFO     | [payload] failed_post thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:44,470 | INFO     | [job] validate thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:44,939 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:45,022 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:45,023 | INFO     | [job] control thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:45,039 | INFO     | [payload] validate_post thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:45,985 | INFO     | [data] copytool_out thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:48,102 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:53,587 | INFO     | job.realtimelogging is not enabled
[2025-07-25 11:39:13] 2025-07-25 15:38:54,592 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 11:39:13] 2025-07-25 15:38:56,264 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140666292287296)>', '<ExcThread(monitor, started 140665388254976)>']
[2025-07-25 11:39:13] 2025-07-25 15:39:01,289 | INFO     | all workflow threads have been joined
[2025-07-25 11:39:13] 2025-07-25 15:39:01,290 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 11:39:13] 2025-07-25 15:39:01,290 | INFO     | traces error code: 0
[2025-07-25 11:39:13] 2025-07-25 15:39:01,290 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 11:39:13] 2025-07-25 15:39:13,406 | INFO     | PID=31875 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-25 11:39:13] 2025-07-25 15:39:13,406 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 11:39:13] 2025-07-25 15:39:13,407 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 11:39:13] 2025-07-25 15:39:13,407 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 11:39:13] 2025-07-25 15:39:13,407 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 11:39:13] 2025-07-25 15:39:13,407 | CRITICAL | thread 'MainThread' is not alive
[2025-07-25 11:39:13] 2025-07-25 15:39:13,407 | INFO     | [monitor] control thread has ended
[2025-07-25 11:39:13] 2025-07-25 15:39:13,498 [wrapper] ==== pilot stdout END ====
[2025-07-25 11:39:13] 2025-07-25 15:39:13,502 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 11:39:13] 2025-07-25 15:39:13,506 [wrapper] pilotpid: 31875
[2025-07-25 11:39:13] 2025-07-25 15:39:13,510 [wrapper] Pilot exit status: 0
[2025-07-25 11:39:13] 2025-07-25 15:39:13,526 [wrapper] pandaids: 6744955702
[2025-07-25 11:39:13] 2025-07-25 15:39:13,565 [wrapper] cleanup supervisor_pilot 21109 31876
[2025-07-25 11:39:13] 2025-07-25 15:39:13,569 [wrapper] Test setup, not cleaning
[2025-07-25 11:39:13] 2025-07-25 15:39:13,573 [wrapper] apfmon messages muted
[2025-07-25 11:39:13] 2025-07-25 15:39:13,577 [wrapper] ==== wrapper stdout END ====
[2025-07-25 11:39:13] 2025-07-25 15:39:13,581 [wrapper] ==== wrapper stderr END ====
[2025-07-25 11:39:13]  *** Error codes and diagnostics ***
[2025-07-25 11:39:13]     "exeErrorCode": 0,
[2025-07-25 11:39:13]     "exeErrorDiag": "",
[2025-07-25 11:39:13]     "pilotErrorCode": 0,
[2025-07-25 11:39:13]     "pilotErrorDiag": "",
[2025-07-25 11:39:13]  *** Listing of results directory ***
[2025-07-25 11:39:13] total 345120
[2025-07-25 11:39:13] -rw-r--r-- 1 boincer umatlas    550332 Jun 18 11:33 pilot3.tar.gz
[2025-07-25 11:39:13] -rwx------ 1 boincer umatlas     36292 Jul 25 03:45 runpilot2-wrapper.sh
[2025-07-25 11:39:13] -rw-r--r-- 1 boincer umatlas      5112 Jul 25 03:45 queuedata.json
[2025-07-25 11:39:13] -rw-r--r-- 1 boincer umatlas       100 Jul 25 10:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 11:39:13] -rwxr-xr-x 1 boincer umatlas      7986 Jul 25 10:18 run_atlas
[2025-07-25 11:39:13] -rw-r--r-- 1 boincer umatlas       105 Jul 25 10:18 job.xml
[2025-07-25 11:39:13] -rw-r--r-- 2 boincer umatlas 145263773 Jul 25 10:18 EVNT.45743347._001157.pool.root.1
[2025-07-25 11:39:13] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 10:18 start_atlas.sh
[2025-07-25 11:39:13] drwxrwx--x 2 boincer umatlas      4096 Jul 25 10:18 shared
[2025-07-25 11:39:13] -rw-r--r-- 2 boincer umatlas    564550 Jul 25 10:18 input.tar.gz
[2025-07-25 11:39:13] -rw-r--r-- 1 boincer umatlas         0 Jul 25 10:18 boinc_lockfile
[2025-07-25 11:39:13] -rw-r--r-- 1 boincer umatlas      2561 Jul 25 10:18 pandaJob.out
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas    979325 Jul 25 10:18 agis_schedconf.cvmfs.json
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas   1593052 Jul 25 10:18 agis_ddmendpoints.agis.ALL.json
[2025-07-25 11:39:13] drwx------ 6 boincer umatlas      4096 Jul 25 10:18 pilot3
[2025-07-25 11:39:13] -rw-r--r-- 1 boincer umatlas      5868 Jul 25 11:36 init_data.xml
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas 202591977 Jul 25 11:37 HITS.45743349._018080.pool.root.1
[2025-07-25 11:39:13] -rw-r--r-- 1 boincer umatlas       529 Jul 25 11:38 boinc_task_state.xml
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas      1050 Jul 25 11:38 memory_monitor_summary.json
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas        95 Jul 25 11:38 pilot_heartbeat.json
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas    353533 Jul 25 11:38 log.45743349._018080.job.log.tgz.1
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas      7853 Jul 25 11:38 heartbeat.json
[2025-07-25 11:39:13] -rw-r--r-- 1 boincer umatlas      8192 Jul 25 11:38 boinc_mmap_file
[2025-07-25 11:39:13] -rw-r--r-- 1 boincer umatlas        27 Jul 25 11:38 wrapper_checkpoint.txt
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas       815 Jul 25 11:39 pilotlog.txt
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas    462336 Jul 25 11:39 log.45743349._018080.job.log.1
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas       357 Jul 25 11:39 output.list
[2025-07-25 11:39:13] -rw-r--r-- 1 boincer umatlas       620 Jul 25 11:39 runtime_log
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas    839680 Jul 25 11:39 result.tar.gz
[2025-07-25 11:39:13] -rw-r--r-- 1 boincer umatlas      8662 Jul 25 11:39 runtime_log.err
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas       659 Jul 25 11:39 rNzLDmTISz7n9Rq4apOajLDm4fhM0noT9bVof3QYDm1fyKDm95GwVo.diag
[2025-07-25 11:39:13] -rw-r--r-- 1 boincer umatlas     22043 Jul 25 11:39 stderr.txt
[2025-07-25 11:39:13] HITS file was successfully produced:
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas 202591977 Jul 25 11:37 shared/HITS.pool.root.1
[2025-07-25 11:39:13]  *** Contents of shared directory: ***
[2025-07-25 11:39:13] total 341096
[2025-07-25 11:39:13] -rw-r--r-- 2 boincer umatlas 145263773 Jul 25 10:18 ATLAS.root_0
[2025-07-25 11:39:13] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 10:18 start_atlas.sh
[2025-07-25 11:39:13] -rw-r--r-- 2 boincer umatlas    564550 Jul 25 10:18 input.tar.gz
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas 202591977 Jul 25 11:37 HITS.pool.root.1
[2025-07-25 11:39:13] -rw------- 1 boincer umatlas    839680 Jul 25 11:39 result.tar.gz
11:39:15 (28279): run_atlas exited; CPU time 51841.793454
11:39:15 (28279): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN