Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-25 15:51:40 (26276): Detected: vboxwrapper 26206
2025-07-25 15:51:40 (26276): Detected: BOINC client v8.0.2
2025-07-25 15:51:41 (26276): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-07-25 15:51:41 (26276): Successfully copied 'init_data.xml' to the shared directory.
2025-07-25 15:51:42 (26276): Create VM. (boinc_4661b7872940a4ee, slot#0)
2025-07-25 15:51:42 (26276): Setting Memory Size for VM. (4800MB)
2025-07-25 15:51:42 (26276): Setting CPU Count for VM. (8)
2025-07-25 15:51:43 (26276): Setting Chipset Options for VM.
2025-07-25 15:51:43 (26276): Setting Graphics Controller Options for VM.
2025-07-25 15:51:43 (26276): Setting Boot Options for VM.
2025-07-25 15:51:43 (26276): Setting Network Configuration for NAT.
2025-07-25 15:51:44 (26276): Enabling VM Network Access.
2025-07-25 15:51:44 (26276): Disabling USB Support for VM.
2025-07-25 15:51:44 (26276): Disabling COM Port Support for VM.
2025-07-25 15:51:45 (26276): Disabling LPT Port Support for VM.
2025-07-25 15:51:45 (26276): Disabling Audio Support for VM.
2025-07-25 15:51:45 (26276): Disabling Clipboard Support for VM.
2025-07-25 15:51:45 (26276): Disabling Drag and Drop Support for VM.
2025-07-25 15:51:46 (26276): Adding storage controller(s) to VM.
2025-07-25 15:51:46 (26276): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-25 15:51:49 (26276): Adding VirtualBox Guest Additions to VM.
2025-07-25 15:51:49 (26276): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-25 15:51:49 (26276): forwarding host port 55300 to guest port 80
2025-07-25 15:51:50 (26276): Enabling remote desktop for VM.
2025-07-25 15:51:50 (26276): Required extension pack not installed, remote desktop not enabled.
2025-07-25 15:51:50 (26276): Enabling shared directory for VM.
2025-07-25 15:51:50 (26276): Starting VM using VBoxManage interface. (boinc_4661b7872940a4ee, slot#0)
2025-07-25 15:51:56 (26276): Successfully started VM. (PID = '27844')
2025-07-25 15:51:56 (26276): Reporting VM Process ID to BOINC.
2025-07-25 15:51:56 (26276): Guest Log: BIOS: VirtualBox 7.1.12
2025-07-25 15:51:56 (26276): Guest Log: CPUID EDX: 0x178bfbff
2025-07-25 15:51:56 (26276): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-25 15:51:56 (26276): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-25 15:51:56 (26276): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-25 15:51:56 (26276): Detected: Web Application Enabled (http://localhost:55300)
2025-07-25 15:51:56 (26276): Preference change detected
2025-07-25 15:51:56 (26276): Setting CPU throttle for VM. (100%)
2025-07-25 15:51:56 (26276): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-25 15:51:58 (26276): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-25 15:51:58 (26276): Guest Log: BIOS: Booting from Hard Disk...
2025-07-25 15:52:01 (26276): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-25 15:52:01 (26276): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-25 15:52:01 (26276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-25 15:52:09 (26276): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-25 15:52:09 (26276): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-25 15:52:15 (26276): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-25 15:52:15 (26276): Guest Log: 00:00:00.000143 main     Log opened 2025-07-25T15:52:12.802430000Z
2025-07-25 15:52:15 (26276): Guest Log: 00:00:00.000242 main     OS Product: Linux
2025-07-25 15:52:15 (26276): Guest Log: 00:00:00.000272 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-25 15:52:15 (26276): Guest Log: 00:00:00.000297 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-25 15:52:15 (26276): Guest Log: 00:00:00.000321 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-25 15:52:15 (26276): Guest Log: 00:00:00.000322 main     Process ID: 1375
2025-07-25 15:52:15 (26276): Guest Log: 00:00:00.000323 main     Package type: LINUX_64BITS_GENERIC
2025-07-25 15:52:15 (26276): Guest Log: 00:00:00.002001 main     5.2.32 r132073 started. Verbose level = 0
2025-07-25 15:52:15 (26276): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-25 15:52:15 (26276): Guest Log: [INFO] Mounting shared directory
2025-07-25 15:52:15 (26276): Guest Log: [INFO] Checking for init_data.xml
2025-07-25 15:52:19 (26276): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-25 15:52:19 (26276): Guest Log: [INFO] Detected branch: prod
2025-07-25 15:52:20 (26276): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-25 15:52:20 (26276): Guest Log: Copying input files
2025-07-25 15:52:21 (26276): Guest Log: Copied input files into RunAtlas.
2025-07-25 15:52:21 (26276): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-25 15:52:21 (26276): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-25 15:52:21 (26276): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-25 15:52:21 (26276): Guest Log: Further information can be found at the LHC@home message board.
2025-07-25 15:52:25 (26276): Guest Log: 00:00:10.006084 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 211 525 445 000ns (GuestNow=1 753 483 944 331 885 000 ns GuestLast=1 753 458 732 806 440 000 ns fSetTimeLastLoop=true )
2025-07-25 15:52:31 (26276): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-25 15:52:32 (26276): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-25 15:52:32 (26276): Guest Log: 2.6.3.0 1655 0 32220 148756 3 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-25 15:52:33 (26276): Guest Log: copied the webapp to /var/www
2025-07-25 15:52:33 (26276): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-25 15:52:33 (26276): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-25 15:52:33 (26276): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-25 15:52:33 (26276): Guest Log:  *** Starting ATLAS job. (PandaID=6744955685 taskID=45743349) ***
2025-07-25 17:43:43 (26276): Status Report: Elapsed Time: '6000.643427'
2025-07-25 17:43:43 (26276): Status Report: CPU Time: '47088.343750'
2025-07-25 18:21:36 (26276): Guest Log:  *** Job finished ***
2025-07-25 18:21:36 (26276): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:24,084 | INFO     | [job] control thread has finished
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:24,767 | INFO     | [data] copytool_out thread has finished
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:27,150 | INFO     | [data] queue_monitor thread has finished
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:27,612 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140481338472256)>', '<ExcThread(monitor, started 140480369116928)>']
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:27,613 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:27,613 | INFO     | [monitor] control thread has ended
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:32,695 | INFO     | all workflow threads have been joined
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:32,695 | INFO     | end of generic workflow (traces error code: 0)
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:32,695 | INFO     | traces error code: 0
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:32,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:32,898 [wrapper] ==== pilot stdout END ====
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:32,902 [wrapper] ==== wrapper stdout RESUME ====
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:32,907 [wrapper] pilotpid: 6012
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:32,910 [wrapper] Pilot exit status: 0
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:32,994 [wrapper] pandaids: 6744955685
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:33,026 [wrapper] cleanup supervisor_pilot  5505 6013
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:33,032 [wrapper] Test setup, not cleaning
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:33,038 [wrapper] apfmon messages muted
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:33,043 [wrapper] ==== wrapper stdout END ====
2025-07-25 18:21:36 (26276): Guest Log: 2025-07-26 01:21:33,048 [wrapper] ==== wrapper stderr END ====
2025-07-25 18:21:36 (26276): Guest Log:  *** Error codes and diagnostics ***
2025-07-25 18:21:36 (26276): Guest Log:     "exeErrorCode": 0,
2025-07-25 18:21:36 (26276): Guest Log:     "exeErrorDiag": "",
2025-07-25 18:21:36 (26276): Guest Log:     "pilotErrorCode": 0,
2025-07-25 18:21:36 (26276): Guest Log:     "pilotErrorDiag": "",
2025-07-25 18:21:36 (26276): Guest Log:  *** Listing of results directory ***
2025-07-25 18:21:36 (26276): Guest Log: total 206496
2025-07-25 18:21:36 (26276): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 25 07:34 pilot3.tar.gz
2025-07-25 18:21:36 (26276): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 25 07:39 queuedata.json
2025-07-25 18:21:36 (26276): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 25 07:40 runpilot2-wrapper.sh
2025-07-25 18:21:36 (26276): Guest Log: -rwxr-xr-x. 1 atlas atlas      8738 Jul 25 22:52 init_data.xml
2025-07-25 18:21:36 (26276): Guest Log: -rwxr-xr-x. 1 atlas atlas    542878 Jul 25 22:52 input.tar.gz
2025-07-25 18:21:36 (26276): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 25 22:52 start_atlas.sh
2025-07-25 18:21:36 (26276): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 25 22:52 EVNT.45743347._001156.pool.root.1 -> /data/./ATLAS.root_0
2025-07-25 18:21:36 (26276): Guest Log: -rw-r--r--. 1 atlas atlas      2560 Jul 25 22:52 pandaJob.out
2025-07-25 18:21:36 (26276): Guest Log: -rw-------. 1 atlas atlas    980001 Jul 25 22:53 agis_schedconf.cvmfs.json
2025-07-25 18:21:36 (26276): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 25 22:53 agis_ddmendpoints.agis.ALL.json
2025-07-25 18:21:36 (26276): Guest Log: drwx------. 4 atlas atlas      4096 Jul 25 22:53 pilot3
2025-07-25 18:21:36 (26276): Guest Log: -rw-------. 1 atlas atlas 205522381 Jul 26 01:20 HITS.45743349._018063.pool.root.1
2025-07-25 18:21:36 (26276): Guest Log: -rw-------. 1 atlas atlas        95 Jul 26 01:20 pilot_heartbeat.json
2025-07-25 18:21:36 (26276): Guest Log: -rw-------. 1 atlas atlas      1044 Jul 26 01:21 memory_monitor_summary.json
2025-07-25 18:21:36 (26276): Guest Log: -rw-------. 1 atlas atlas    323919 Jul 26 01:21 log.45743349._018063.job.log.tgz.1
2025-07-25 18:21:36 (26276): Guest Log: -rw-------. 1 atlas atlas      7784 Jul 26 01:21 heartbeat.json
2025-07-25 18:21:36 (26276): Guest Log: -rw-------. 1 atlas atlas      4540 Jul 26 01:21 pilotlog.txt
2025-07-25 18:21:36 (26276): Guest Log: -rw-------. 1 atlas atlas    733222 Jul 26 01:21 log.45743349._018063.job.log.1
2025-07-25 18:21:36 (26276): Guest Log: -rw-------. 1 atlas atlas       357 Jul 26 01:21 output.list
2025-07-25 18:21:36 (26276): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 26 01:21 runtime_log
2025-07-25 18:21:36 (26276): Guest Log: -rw-------. 1 atlas atlas   1075200 Jul 26 01:21 result.tar.gz
2025-07-25 18:21:36 (26276): Guest Log: -rw-r--r--. 1 atlas atlas      8580 Jul 26 01:21 runtime_log.err
2025-07-25 18:21:36 (26276): Guest Log: -rw-------. 1 atlas atlas       653 Jul 26 01:21 LsiLDmODSz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQ0OLDmSe1HHm.diag
2025-07-25 18:21:36 (26276): Guest Log: Looking for outputfile HITS.45743349._018063.pool.root.1
2025-07-25 18:21:36 (26276): Guest Log: HITS file was successfully produced
2025-07-25 18:21:36 (26276): Guest Log: -rw-------. 1 atlas atlas 205522381 Jul 26 01:20 /home/atlas/RunAtlas/HITS.45743349._018063.pool.root.1
2025-07-25 18:21:38 (26276): Guest Log: Successfully finished the ATLAS job!
2025-07-25 18:21:38 (26276): Guest Log: Copying the results back to the shared directory!
2025-07-25 18:21:38 (26276): Guest Log:  *** Contents of shared directory: ***
2025-07-25 18:21:38 (26276): Guest Log: total 303876
2025-07-25 18:21:38 (26276): Guest Log: -rwxrwxrwx. 1 root root 146905737 Jul 25 22:51 ATLAS.root_0
2025-07-25 18:21:38 (26276): Guest Log: -rwxrwxrwx. 1 root root 205522381 Jul 26 01:21 HITS.pool.root.1
2025-07-25 18:21:38 (26276): Guest Log: -rwxrwxrwx. 1 root root      8738 Jul 25 22:51 init_data.xml
2025-07-25 18:21:38 (26276): Guest Log: -rwxrwxrwx. 1 root root    542878 Jul 25 14:06 input.tar.gz
2025-07-25 18:21:38 (26276): Guest Log: -rwxrwxrwx. 1 root root   1075200 Jul 26 01:21 result.tar.gz
2025-07-25 18:21:38 (26276): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 25 14:06 start_atlas.sh
2025-07-25 18:21:38 (26276): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-25 18:21:38 (26276): VM Completion File Detected.
2025-07-25 18:21:38 (26276): Powering off VM.
2025-07-25 18:21:40 (26276): Successfully stopped VM.
2025-07-25 18:21:40 (26276): Deregistering VM. (boinc_4661b7872940a4ee, slot#0)
2025-07-25 18:21:40 (26276): Removing network bandwidth throttle group from VM.
2025-07-25 18:21:41 (26276): Removing VM from VirtualBox.
18:21:46 (26276): called boinc_finish(0)

</stderr_txt>
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