Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:14:44 (4800): wrapper (7.7.26015): starting
10:14:44 (4800): wrapper: running run_atlas (--nthreads 12)
[2025-07-25 10:14:44] Arguments: --nthreads 12
[2025-07-25 10:14:44] Threads: 12
[2025-07-25 10:14:44] Checking for CVMFS
[2025-07-25 10:14:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-25 10:14:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-25 10:14:44] Running cvmfs_config stat atlas.cern.ch
[2025-07-25 10:14:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-25 10:14:44] 2.11.2.0 3035 109182 97964 148743 2 56 14408889 20275200 1 130560 0 35313516 99.969 10039441 11046 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-25 10:14:44] CVMFS is ok
[2025-07-25 10:14:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 10:14:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 10:14:44] Further information can be found at the LHC@home message board.
[2025-07-25 10:14:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 10:14:44] Checking for apptainer binary...
[2025-07-25 10:14:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-25 10:14:44] Running /usr/bin/apptainer --version
[2025-07-25 10:14:44] apptainer version 1.3.2-1.el7
[2025-07-25 10:14:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 10:14:46] c-205-31.aglt2.org
[2025-07-25 10:14:46] apptainer works
[2025-07-25 10:14:46] Set ATHENA_PROC_NUMBER=12
[2025-07-25 10:14:46] Set ATHENA_CORE_NUMBER=12
[2025-07-25 10:14:46] Starting ATLAS job with PandaID=6744955704
[2025-07-25 10:14:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 11:39:29]  *** The last 200 lines of the pilot log: ***
[2025-07-25 11:39:29]  status=None
[2025-07-25 11:39:29]  status_code=0
[2025-07-25 11:39:29]  storage_token=
[2025-07-25 11:39:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6744955704/log.45743349._018082.job.log.tgz.1
[2025-07-25 11:39:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8c/3f/log.45743349._018082.job.log.tgz.1
[2025-07-25 11:39:29]  workdir=None
[2025-07-25 11:39:29] ]
[2025-07-25 11:39:29] 2025-07-25 15:38:48,155 | INFO     | transferring file log.45743349._018082.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6744955704/log.45743349._018082.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-25 11:39:29] 2025-07-25 15:38:48,155 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6744955704/log.45743349._018082.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._018082.job
[2025-07-25 11:39:29] 2025-07-25 15:38:48,176 | INFO     | adding to output.list: log.45743349._018082.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8c/3f/log.45743349._018082.job.log.tg
[2025-07-25 11:39:29] 2025-07-25 15:38:48,177 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-25 11:39:29] 2025-07-25 15:38:48,177 | INFO     | summary of transferred files:
[2025-07-25 11:39:29] 2025-07-25 15:38:48,177 | INFO     |  -- lfn=log.45743349._018082.job.log.tgz.1, status_code=0, status=transferred
[2025-07-25 11:39:29] 2025-07-25 15:38:48,177 | INFO     | stage-out finished correctly
[2025-07-25 11:39:29] 2025-07-25 15:38:48,851 | INFO     | monitor loop #375: job 0:6744955704 is in state 'finished'
[2025-07-25 11:39:29] 2025-07-25 15:38:48,852 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:39:29] 2025-07-25 15:38:50,142 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-25 11:39:29] 2025-07-25 15:38:51,355 | INFO     | monitor loop #376: job 0:6744955704 is in state 'finished'
[2025-07-25 11:39:29] 2025-07-25 15:38:51,355 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:39:29] 2025-07-25 15:38:51,360 | INFO     | job 6744955704 has state=finished
[2025-07-25 11:39:29] 2025-07-25 15:38:51,360 | INFO     | preparing for final server update for job 6744955704 in state='finished'
[2025-07-25 11:39:29] 2025-07-25 15:38:51,422 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-25 11:39:29] 2025-07-25 15:38:51,422 | INFO     | this job has now completed (state=finished)
[2025-07-25 11:39:29] 2025-07-25 15:38:51,423 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-25 11:39:29] 2025-07-25 15:38:51,423 | INFO     | log transfer has been attempted: DONE
[2025-07-25 11:39:29] 2025-07-25 15:38:51,423 | INFO     | job 6744955704 has finished - writing final server update
[2025-07-25 11:39:29] 2025-07-25 15:38:51,423 | INFO     | total number of processed events: 400 (read)
[2025-07-25 11:39:29] 2025-07-25 15:38:51,424 | INFO     | executing command: lscpu
[2025-07-25 11:39:29] 2025-07-25 15:38:51,450 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-25 11:39:29] 2025-07-25 15:38:53,858 | INFO     | monitor loop #377: job 0:6744955704 is in state 'finished'
[2025-07-25 11:39:29] 2025-07-25 15:38:53,858 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:39:29] 2025-07-25 15:38:56,361 | INFO     | monitor loop #378: job 0:6744955704 is in state 'finished'
[2025-07-25 11:39:29] 2025-07-25 15:38:56,361 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-25 11:39:29] 2025-07-25 15:38:56,536 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-25 11:39:29] 2025-07-25 15:38:56,544 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1784.5833333333333
[2025-07-25 11:39:29] 2025-07-25 15:38:56,547 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744955704/memory_monitor_summary.json (trf name=prmon)
[2025-07-25 11:39:29] 2025-07-25 15:38:56,548 | INFO     | extracted standard info from prmon json
[2025-07-25 11:39:29] 2025-07-25 15:38:56,548 | INFO     | extracted standard memory fields from prmon json
[2025-07-25 11:39:29] 2025-07-25 15:38:56,548 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-25 11:39:29] 2025-07-25 15:38:56,549 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-25 11:39:29] 2025-07-25 15:38:56,549 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-25 11:39:29] 2025-07-25 15:38:56,551 | INFO     | fitting pss+swap vs Time
[2025-07-25 11:39:29] 2025-07-25 15:38:56,551 | INFO     | sum of square deviations: 130793150.0
[2025-07-25 11:39:29] 2025-07-25 15:38:56,551 | INFO     | sum of deviations: 291085900.0000003
[2025-07-25 11:39:29] 2025-07-25 15:38:56,552 | INFO     | mean x: 1753455492.0
[2025-07-25 11:39:29] 2025-07-25 15:38:56,552 | INFO     | mean y: 2732101.8533333335
[2025-07-25 11:39:29] 2025-07-25 15:38:56,552 | INFO     | -- intersect: -3899660110.5734134
[2025-07-25 11:39:29] 2025-07-25 15:38:56,552 | INFO     | intersect: -3899660110.5734134
[2025-07-25 11:39:29] 2025-07-25 15:38:56,552 | INFO     | chi2: 0.05330699250511009
[2025-07-25 11:39:29] 2025-07-25 15:38:56,552 | INFO     | -- intersect: -3899660110.5734134
[2025-07-25 11:39:29] 2025-07-25 15:38:56,553 | INFO     | current memory leak: 2.23 B/s (using 75 data points, chi2=0.05)
[2025-07-25 11:39:29] 2025-07-25 15:38:56,553 | INFO     | could have reported an average CPU frequency of 2048 MHz (6 samples)
[2025-07-25 11:39:29] 2025-07-25 15:38:56,553 | INFO     | ..............................
[2025-07-25 11:39:29] 2025-07-25 15:38:56,553 | INFO     | . Timing measurements:
[2025-07-25 11:39:29] 2025-07-25 15:38:56,554 | INFO     | . get job = 0 s
[2025-07-25 11:39:29] 2025-07-25 15:38:56,554 | INFO     | . initial setup = 2 s
[2025-07-25 11:39:29] 2025-07-25 15:38:56,554 | INFO     | . payload setup = 9 s
[2025-07-25 11:39:29] 2025-07-25 15:38:56,554 | INFO     | . stage-in = 0 s
[2025-07-25 11:39:29] 2025-07-25 15:38:56,554 | INFO     | . payload execution = 4998 s
[2025-07-25 11:39:29] 2025-07-25 15:38:56,554 | INFO     | . stage-out = 0 s
[2025-07-25 11:39:29] 2025-07-25 15:38:56,555 | INFO     | . log creation = 0 s
[2025-07-25 11:39:29] 2025-07-25 15:38:56,555 | INFO     | ..............................
[2025-07-25 11:39:29] 2025-07-25 15:38:56,641 | INFO     | 
[2025-07-25 11:39:29] 2025-07-25 15:38:56,641 | INFO     | job summary report
[2025-07-25 11:39:29] 2025-07-25 15:38:56,641 | INFO     | --------------------------------------------------
[2025-07-25 11:39:29] 2025-07-25 15:38:56,642 | INFO     | PanDA job id: 6744955704
[2025-07-25 11:39:29] 2025-07-25 15:38:56,642 | INFO     | task id: 45743349
[2025-07-25 11:39:29] 2025-07-25 15:38:56,642 | INFO     | errors: (none)
[2025-07-25 11:39:29] 2025-07-25 15:38:56,642 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 11:39:29] 2025-07-25 15:38:56,642 | INFO     | pilot state: finished 
[2025-07-25 11:39:29] 2025-07-25 15:38:56,642 | INFO     | transexitcode: 0
[2025-07-25 11:39:29] 2025-07-25 15:38:56,642 | INFO     | exeerrorcode: 0
[2025-07-25 11:39:29] 2025-07-25 15:38:56,642 | INFO     | exeerrordiag: 
[2025-07-25 11:39:29] 2025-07-25 15:38:56,642 | INFO     | exitcode: 0
[2025-07-25 11:39:29] 2025-07-25 15:38:56,642 | INFO     | exitmsg: OK
[2025-07-25 11:39:29] 2025-07-25 15:38:56,643 | INFO     | cpuconsumptiontime: 53787 s
[2025-07-25 11:39:29] 2025-07-25 15:38:56,643 | INFO     | nevents: 400
[2025-07-25 11:39:29] 2025-07-25 15:38:56,643 | INFO     | neventsw: 0
[2025-07-25 11:39:29] 2025-07-25 15:38:56,643 | INFO     | pid: 14956
[2025-07-25 11:39:29] 2025-07-25 15:38:56,643 | INFO     | pgrp: 14956
[2025-07-25 11:39:29] 2025-07-25 15:38:56,643 | INFO     | corecount: 12
[2025-07-25 11:39:29] 2025-07-25 15:38:56,643 | INFO     | event service: False
[2025-07-25 11:39:29] 2025-07-25 15:38:56,644 | INFO     | sizes: {0: 2397473, 5: 2397735, 11: 2397791, 5011: 2424064, 5012: 2433062, 5014: 2433118, 5021: 2433440}
[2025-07-25 11:39:29] 2025-07-25 15:38:56,644 | INFO     | --------------------------------------------------
[2025-07-25 11:39:29] 2025-07-25 15:38:56,644 | INFO     | 
[2025-07-25 11:39:29] 2025-07-25 15:38:56,644 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-25 11:39:29] 2025-07-25 15:38:56,666 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,666 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,666 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,667 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,667 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,667 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,668 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,668 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,668 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,668 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,668 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,669 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,669 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,669 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,670 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,670 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,670 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,670 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 11:39:29] 2025-07-25 15:38:56,671 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,671 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 11:39:29] 2025-07-25 15:38:56,671 | INFO     | job 6744955704 has completed (purged errors)
[2025-07-25 11:39:29] 2025-07-25 15:38:56,672 | INFO     | overall cleanup function is called
[2025-07-25 11:39:29] 2025-07-25 15:38:56,709 | INFO     | PID=8391 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-25 11:39:29] 2025-07-25 15:38:57,678 | INFO     | --- collectZombieJob: --- 10, [14956]
[2025-07-25 11:39:29] 2025-07-25 15:38:57,678 | INFO     | zombie collector waiting for pid 14956
[2025-07-25 11:39:29] 2025-07-25 15:38:57,679 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 11:39:29] 2025-07-25 15:38:57,679 | INFO     | collected zombie processes
[2025-07-25 11:39:29] 2025-07-25 15:38:57,679 | INFO     | will attempt to kill all subprocesses of pid=14956
[2025-07-25 11:39:29] 2025-07-25 15:38:57,770 | INFO     | process IDs to be killed: [14956] (in reverse order)
[2025-07-25 11:39:29] 2025-07-25 15:38:57,820 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 11:39:29] 2025-07-25 15:38:57,821 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 11:39:29] 2025-07-25 15:38:57,824 | INFO     | did not find any defunct processes belonging to 14956
[2025-07-25 11:39:29] 2025-07-25 15:38:57,826 | INFO     | did not find any defunct processes belonging to 14956
[2025-07-25 11:39:29] 2025-07-25 15:38:57,827 | INFO     | ready for new job
[2025-07-25 11:39:29] 2025-07-25 15:38:57,827 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 11:39:29] 2025-07-25 15:38:57,828 | INFO     | ***************************************
[2025-07-25 11:39:29] 2025-07-25 15:38:57,828 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 11:39:29] 2025-07-25 15:38:57,828 | INFO     | ***************************************
[2025-07-25 11:39:29] 2025-07-25 15:38:57,828 | INFO     | 
[2025-07-25 11:39:29] 2025-07-25 15:38:57,829 | INFO     | architecture information:
[2025-07-25 11:39:29] 2025-07-25 15:38:57,829 | INFO     | executing command: cat /etc/os-release
[2025-07-25 11:39:29] 2025-07-25 15:38:57,846 | INFO     | cat /etc/os-release:
[2025-07-25 11:39:29] NAME="CentOS Linux"
[2025-07-25 11:39:29] VERSION="7 (Core)"
[2025-07-25 11:39:29] ID="centos"
[2025-07-25 11:39:29] ID_LIKE="rhel fedora"
[2025-07-25 11:39:29] VERSION_ID="7"
[2025-07-25 11:39:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 11:39:29] ANSI_COLOR="0;31"
[2025-07-25 11:39:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 11:39:29] HOME_URL="https://www.centos.org/"
[2025-07-25 11:39:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 11:39:29] 
[2025-07-25 11:39:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 11:39:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 11:39:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 11:39:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 11:39:29] 
[2025-07-25 11:39:29] 2025-07-25 15:38:57,846 | INFO     | ***************************************
[2025-07-25 11:39:29] 2025-07-25 15:38:58,349 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-25 11:39:29] 2025-07-25 15:38:58,366 | INFO     | sufficient remaining disk space (29509025792 B)
[2025-07-25 11:39:29] 2025-07-25 15:38:58,366 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 11:39:29] 2025-07-25 15:38:58,366 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 11:39:29] 2025-07-25 15:38:58,367 | INFO     | update_server=False
[2025-07-25 11:39:29] 2025-07-25 15:38:58,367 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 11:39:29] 2025-07-25 15:38:58,367 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 11:39:29] 2025-07-25 15:38:58,696 | INFO     | all job control threads have been joined
[2025-07-25 11:39:29] 2025-07-25 15:38:58,783 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 11:39:29] 2025-07-25 15:38:58,865 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-25 11:39:29] 2025-07-25 15:38:58,865 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-25 11:39:29] 2025-07-25 15:38:58,865 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 11:39:29] 2025-07-25 15:38:58,865 | INFO     | will abort loop
[2025-07-25 11:39:29] 2025-07-25 15:38:59,283 | INFO     | all data control threads have been joined
[2025-07-25 11:39:29] 2025-07-25 15:38:59,359 | INFO     | all payload control threads have been joined
[2025-07-25 11:39:29] 2025-07-25 15:38:59,372 | INFO     | [job] retrieve thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:38:59,373 | INFO     | [job] queue monitor thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:38:59,616 | INFO     | [payload] validate_post thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:38:59,702 | INFO     | [job] control thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:38:59,871 | INFO     | [job] job monitor thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:38:59,935 | INFO     | [job] validate thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:39:00,044 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:39:00,288 | INFO     | [data] control thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:39:00,343 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:39:00,364 | INFO     | [payload] control thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:39:00,411 | INFO     | [payload] failed_post thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:39:00,420 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:39:00,717 | INFO     | [data] copytool_in thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:39:00,735 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 11:39:29] 2025-07-25 15:39:00,783 | INFO     | [data] copytool_out thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:39:04,741 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:39:09,295 | INFO     | job.realtimelogging is not enabled
[2025-07-25 11:39:29] 2025-07-25 15:39:10,300 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 11:39:29] 2025-07-25 15:39:11,885 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139898778670912)>', '<ExcThread(monitor, started 139898308761344)>']
[2025-07-25 11:39:29] 2025-07-25 15:39:16,887 | INFO     | all workflow threads have been joined
[2025-07-25 11:39:29] 2025-07-25 15:39:16,887 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 11:39:29] 2025-07-25 15:39:16,887 | INFO     | traces error code: 0
[2025-07-25 11:39:29] 2025-07-25 15:39:16,888 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 11:39:29] 2025-07-25 15:39:28,909 | INFO     | PID=8391 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-25 11:39:29] 2025-07-25 15:39:28,910 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 11:39:29] 2025-07-25 15:39:28,910 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 11:39:29] 2025-07-25 15:39:28,910 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 11:39:29] 2025-07-25 15:39:28,910 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 11:39:29] 2025-07-25 15:39:28,911 | CRITICAL | thread 'MainThread' is not alive
[2025-07-25 11:39:29] 2025-07-25 15:39:28,911 | INFO     | [monitor] control thread has ended
[2025-07-25 11:39:29] 2025-07-25 15:39:29,011 [wrapper] ==== pilot stdout END ====
[2025-07-25 11:39:29] 2025-07-25 15:39:29,015 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 11:39:29] 2025-07-25 15:39:29,024 [wrapper] pilotpid: 8391
[2025-07-25 11:39:29] 2025-07-25 15:39:29,028 [wrapper] Pilot exit status: 0
[2025-07-25 11:39:29] 2025-07-25 15:39:29,044 [wrapper] pandaids: 6744955704
[2025-07-25 11:39:29] 2025-07-25 15:39:29,087 [wrapper] cleanup supervisor_pilot  6894 8392
[2025-07-25 11:39:29] 2025-07-25 15:39:29,091 [wrapper] Test setup, not cleaning
[2025-07-25 11:39:29] 2025-07-25 15:39:29,095 [wrapper] apfmon messages muted
[2025-07-25 11:39:29] 2025-07-25 15:39:29,099 [wrapper] ==== wrapper stdout END ====
[2025-07-25 11:39:29] 2025-07-25 15:39:29,103 [wrapper] ==== wrapper stderr END ====
[2025-07-25 11:39:29]  *** Error codes and diagnostics ***
[2025-07-25 11:39:29]     "exeErrorCode": 0,
[2025-07-25 11:39:29]     "exeErrorDiag": "",
[2025-07-25 11:39:29]     "pilotErrorCode": 0,
[2025-07-25 11:39:29]     "pilotErrorDiag": "",
[2025-07-25 11:39:29]  *** Listing of results directory ***
[2025-07-25 11:39:29] total 359520
[2025-07-25 11:39:29] -rw-r--r-- 1 boincer umatlas    530466 Jul 25 03:34 pilot3.tar.gz
[2025-07-25 11:39:29] -rwx------ 1 boincer umatlas     36292 Jul 25 03:45 runpilot2-wrapper.sh
[2025-07-25 11:39:29] -rw-r--r-- 1 boincer umatlas      5112 Jul 25 03:45 queuedata.json
[2025-07-25 11:39:29] -rw-r--r-- 1 boincer umatlas       100 Jul 25 10:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 11:39:29] -rwxr-xr-x 1 boincer umatlas      7986 Jul 25 10:14 run_atlas
[2025-07-25 11:39:29] -rw-r--r-- 1 boincer umatlas       105 Jul 25 10:14 job.xml
[2025-07-25 11:39:29] -rw-r--r-- 2 boincer umatlas 145263773 Jul 25 10:14 EVNT.45743347._001157.pool.root.1
[2025-07-25 11:39:29] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 10:14 start_atlas.sh
[2025-07-25 11:39:29] drwxrwx--x 2 boincer umatlas      4096 Jul 25 10:14 shared
[2025-07-25 11:39:29] -rw-r--r-- 2 boincer umatlas    542890 Jul 25 10:14 input.tar.gz
[2025-07-25 11:39:29] -rw-r--r-- 1 boincer umatlas         0 Jul 25 10:14 boinc_lockfile
[2025-07-25 11:39:29] -rw-r--r-- 1 boincer umatlas      2562 Jul 25 10:14 pandaJob.out
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas    979325 Jul 25 10:14 agis_schedconf.cvmfs.json
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas   1593052 Jul 25 10:14 agis_ddmendpoints.agis.ALL.json
[2025-07-25 11:39:29] drwx------ 4 boincer umatlas      4096 Jul 25 10:14 pilot3
[2025-07-25 11:39:29] -rw-r--r-- 1 boincer umatlas      5868 Jul 25 11:38 init_data.xml
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas 217347947 Jul 25 11:38 HITS.45743349._018082.pool.root.1
[2025-07-25 11:39:29] -rw-r--r-- 1 boincer umatlas       530 Jul 25 11:38 boinc_task_state.xml
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas      1048 Jul 25 11:38 memory_monitor_summary.json
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas    356219 Jul 25 11:38 log.45743349._018082.job.log.tgz.1
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas      7849 Jul 25 11:38 heartbeat.json
[2025-07-25 11:39:29] -rw-r--r-- 1 boincer umatlas      8192 Jul 25 11:39 boinc_mmap_file
[2025-07-25 11:39:29] -rw-r--r-- 1 boincer umatlas        27 Jul 25 11:39 wrapper_checkpoint.txt
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas        95 Jul 25 11:39 pilot_heartbeat.json
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas       814 Jul 25 11:39 pilotlog.txt
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas    478672 Jul 25 11:39 log.45743349._018082.job.log.1
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas       357 Jul 25 11:39 output.list
[2025-07-25 11:39:29] -rw-r--r-- 1 boincer umatlas       620 Jul 25 11:39 runtime_log
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas    849920 Jul 25 11:39 result.tar.gz
[2025-07-25 11:39:29] -rw-r--r-- 1 boincer umatlas      8662 Jul 25 11:39 runtime_log.err
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas       659 Jul 25 11:39 QP3LDmTISz7n9Rq4apOajLDm4fhM0noT9bVof3QYDm3fyKDm0fz6en.diag
[2025-07-25 11:39:29] -rw-r--r-- 1 boincer umatlas     22088 Jul 25 11:39 stderr.txt
[2025-07-25 11:39:29] HITS file was successfully produced:
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas 217347947 Jul 25 11:38 shared/HITS.pool.root.1
[2025-07-25 11:39:29]  *** Contents of shared directory: ***
[2025-07-25 11:39:29] total 355500
[2025-07-25 11:39:29] -rw-r--r-- 2 boincer umatlas 145263773 Jul 25 10:14 ATLAS.root_0
[2025-07-25 11:39:29] -rw-r--r-- 2 boincer umatlas     15095 Jul 25 10:14 start_atlas.sh
[2025-07-25 11:39:29] -rw-r--r-- 2 boincer umatlas    542890 Jul 25 10:14 input.tar.gz
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas 217347947 Jul 25 11:38 HITS.pool.root.1
[2025-07-25 11:39:29] -rw------- 1 boincer umatlas    849920 Jul 25 11:39 result.tar.gz
11:39:30 (4800): run_atlas exited; CPU time 53753.130761
11:39:30 (4800): called boinc_finish(0)

</stderr_txt>
]]>

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